Wall clock time and date at job start Mon Mar 30 2020 03:06:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 120.00004 * 2 1
4 4 H 1.48499 * 109.47196 * 270.00046 * 3 2 1
5 5 H 1.48502 * 109.47380 * 29.99857 * 3 2 1
6 6 H 1.48501 * 109.47214 * 149.99798 * 3 2 1
7 7 C 1.37877 * 120.00248 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00515 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99545 * 0.02562 * 7 2 1
10 10 N 1.46903 * 109.46632 * 179.97438 * 9 7 2
11 11 C 1.46905 * 110.99781 * 179.97438 * 10 9 7
12 12 C 1.52998 * 109.47055 * 179.97438 * 11 10 9
13 13 H 1.09003 * 110.05391 * 53.53425 * 12 11 10
14 14 C 1.54261 * 110.03709 * 292.11710 * 12 11 10
15 15 C 1.54883 * 104.20017 * 217.10653 * 14 12 11
16 16 C 1.54894 * 102.74953 * 37.94043 * 15 14 12
17 17 C 1.53881 * 110.03119 * 174.94852 * 12 11 10
18 18 H 1.08999 * 110.07407 * 238.59826 * 17 12 11
19 19 C 1.50701 * 110.03112 * 0.02562 * 17 12 11
20 20 O 1.20827 * 119.99939 * 85.06185 * 19 17 12
21 21 O 1.34228 * 119.99728 * 265.06304 * 19 17 12
22 22 H 0.97003 * 119.99945 * 0.02562 * 1 2 3
23 23 H 1.08995 * 109.47521 * 59.99975 * 9 7 2
24 24 H 1.08999 * 109.47153 * 299.99189 * 9 7 2
25 25 H 1.00899 * 110.99990 * 303.94841 * 10 9 7
26 26 H 1.09004 * 109.46568 * 59.99932 * 11 10 9
27 27 H 1.08994 * 109.47087 * 300.00205 * 11 10 9
28 28 H 1.09001 * 110.48547 * 98.42127 * 14 12 11
29 29 H 1.09004 * 110.59720 * 335.84193 * 14 12 11
30 30 H 1.09003 * 110.75607 * 279.62808 * 15 14 12
31 31 H 1.08995 * 110.75922 * 156.25743 * 15 14 12
32 32 H 1.08992 * 110.48852 * 203.38275 * 16 15 14
33 33 H 1.09001 * 110.59442 * 80.78941 * 16 15 14
34 34 H 0.96705 * 116.99822 * 179.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1941 0.0001
9 6 1.2510 -2.4991 0.0005
10 7 2.2057 -3.6157 0.0005
11 6 1.5054 -4.9070 0.0011
12 6 2.5303 -6.0430 0.0005
13 1 3.2331 -5.9128 0.8234
14 6 3.2885 -6.0700 -1.3427
15 6 3.4911 -7.5776 -1.6343
16 6 2.1624 -8.2027 -1.1416
17 6 1.8143 -7.3990 0.1284
18 1 2.1688 -7.9273 1.0135
19 6 0.3243 -7.1900 0.2143
20 8 -0.3293 -7.0789 -0.7958
21 8 -0.2766 -7.1271 1.4129
22 1 -0.4850 0.8401 -0.0004
23 1 0.6247 -2.5571 -0.8896
24 1 0.6241 -2.5567 0.8903
25 1 2.8405 -3.5486 -0.7809
26 1 0.8802 -4.9816 -0.8887
27 1 0.8808 -4.9812 0.8913
28 1 4.2508 -5.5670 -1.2477
29 1 2.6927 -5.6061 -2.1288
30 1 4.3360 -7.9703 -1.0686
31 1 3.6264 -7.7497 -2.7021
32 1 2.3029 -9.2561 -0.8998
33 1 1.3816 -8.0855 -1.8931
34 1 -1.2340 -6.9914 1.4174
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084307459.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:53
Heat of formation + Delta-G solvation = -114.091941 kcal
Electronic energy + Delta-G solvation = -16013.702023 eV
Core-core repulsion = 13331.352324 eV
Total energy + Delta-G solvation = -2682.349699 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.68550 -37.94785 -35.94198 -34.88839 -32.45312 -29.95651 -29.31347 -26.34742
-23.74117 -22.78737 -21.51487 -20.49279 -19.23016 -17.94028 -16.79589 -16.11533
-16.03088 -15.10075 -14.83207 -14.51533 -14.38181 -13.15523 -13.03628 -12.78752
-12.69908 -11.88229 -11.79787 -11.54854 -11.29732 -11.20499 -11.07213 -10.85497
-10.72659 -10.68113 -10.56697 -10.35959 -10.15308 -9.84151 -9.15889 -8.47458
-7.30173 -6.01977 -4.04306 2.31040 3.11810 3.32647 3.38412 3.43092
4.39839 4.44543 4.52035 4.80712 5.17530 5.33107 5.33316 5.33775
5.46160 5.54142 5.59762 5.66605 5.77463 5.81884 6.02501 6.13495
6.15875 6.30279 6.34482 6.51283 6.62237 7.25932 7.43068 7.78525
7.99642 8.13134 8.39048 8.61166 9.04866 9.60524 11.09247
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.036834 B = 0.006003 C = 0.005414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 759.987188 B = 4663.528588 C = 5170.657278
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.055 3.945
3 Si 0.900 3.100
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.273 1.273
7 C -0.514 4.514
8 H 0.063 0.937
9 C 0.193 3.807
10 N -0.686 5.686
11 C 0.051 3.949
12 C -0.076 4.076
13 H 0.094 0.906
14 C -0.121 4.121
15 C -0.121 4.121
16 C -0.117 4.117
17 C -0.082 4.082
18 H 0.103 0.897
19 C 0.489 3.511
20 O -0.515 6.515
21 O -0.517 6.517
22 H 0.261 0.739
23 H -0.014 1.014
24 H 0.027 0.973
25 H 0.329 0.671
26 H 0.027 0.973
27 H 0.064 0.936
28 H 0.075 0.925
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.084 0.916
34 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.214 -16.555 -0.356 17.086
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.146 4.146
3 Si 0.728 3.272
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.197 1.197
7 C -0.553 4.553
8 H 0.081 0.919
9 C 0.067 3.933
10 N -0.316 5.316
11 C -0.079 4.079
12 C -0.095 4.095
13 H 0.113 0.887
14 C -0.158 4.158
15 C -0.158 4.158
16 C -0.154 4.154
17 C -0.102 4.102
18 H 0.121 0.879
19 C 0.332 3.668
20 O -0.403 6.403
21 O -0.329 6.329
22 H 0.071 0.929
23 H 0.003 0.997
24 H 0.045 0.955
25 H 0.145 0.855
26 H 0.045 0.955
27 H 0.082 0.918
28 H 0.093 0.907
29 H 0.088 0.912
30 H 0.088 0.912
31 H 0.088 0.912
32 H 0.089 0.911
33 H 0.103 0.897
34 H 0.266 0.734
Dipole moment (debyes) X Y Z Total
from point charges 4.372 -16.438 0.063 17.010
hybrid contribution -0.776 1.046 -0.807 1.533
sum 3.595 -15.392 -0.745 15.824
Atomic orbital electron populations
1.69972 1.06123 1.26791 1.50869 1.25007 0.94885 0.99418 0.95335
0.86466 0.79778 0.82945 0.78025 1.20716 1.21231 1.19736 1.21181
0.93509 0.90199 1.50383 0.91908 1.19554 0.90630 0.87408 0.95740
1.60690 1.21139 1.00964 1.48837 1.22222 0.94961 0.90662 1.00014
1.21798 0.97261 0.91011 0.99413 0.88741 1.22463 1.00691 0.96058
0.96600 1.22469 0.96606 0.95693 1.01057 1.22460 0.98938 0.98271
0.95736 1.21784 0.87277 0.99602 1.01551 0.87914 1.23345 0.91585
0.71344 0.80552 1.90701 1.66545 1.46070 1.36966 1.84567 1.29281
1.84457 1.34597 0.92904 0.99656 0.95527 0.85454 0.95459 0.91794
0.90657 0.91250 0.91219 0.91173 0.91140 0.89701 0.73362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16
2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16
3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16
4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16
8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16
9 C 0.19 5.28 5.44 -4.97 -0.03 5.25 16
10 N -0.69 -15.16 6.49 -115.05 -0.75 -15.91 16
11 C 0.05 0.97 3.86 -3.82 -0.01 0.95 16
12 C -0.08 -1.07 3.15 -89.50 -0.28 -1.36 16
13 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
14 C -0.12 -1.53 5.56 -25.08 -0.14 -1.67 16
15 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16
16 C -0.12 -1.25 6.32 -25.07 -0.16 -1.41 16
17 C -0.08 -1.00 3.40 -90.65 -0.31 -1.31 16
18 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16
19 C 0.49 7.01 5.13 36.01 0.18 7.20 16
20 O -0.51 -8.88 15.73 -18.75 -0.29 -9.18 16
21 O -0.52 -6.42 13.04 -39.25 -0.51 -6.93 16
22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
23 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16
24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.33 6.87 7.96 -39.29 -0.31 6.56 16
26 H 0.03 0.56 7.06 -51.93 -0.37 0.19 16
27 H 0.06 1.25 6.93 -51.93 -0.36 0.89 16
28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
29 H 0.07 0.99 7.77 -51.93 -0.40 0.58 16
30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
33 H 0.08 1.07 6.91 -51.93 -0.36 0.71 16
34 H 0.41 3.54 9.10 45.56 0.41 3.95 16
LS Contribution 280.92 15.07 4.23 4.23
Total: -1.00 -33.22 280.92 -7.25 -40.47
By element:
Atomic # 1 Polarization: 8.84 SS G_CDS: -4.31 Total: 4.53 kcal
Atomic # 6 Polarization: -6.12 SS G_CDS: -1.33 Total: -7.46 kcal
Atomic # 7 Polarization: -42.61 SS G_CDS: -0.01 Total: -42.62 kcal
Atomic # 8 Polarization: -15.30 SS G_CDS: -0.81 Total: -16.11 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -33.22 -7.25 -40.47 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084307459.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.617 kcal
(2) G-P(sol) polarization free energy of solvation -33.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.840 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds