Wall clock time and date at job start Mon Mar 30 2020 03:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00004 * 2 1 4 4 H 1.48499 * 109.47196 * 270.00046 * 3 2 1 5 5 H 1.48502 * 109.47380 * 29.99857 * 3 2 1 6 6 H 1.48501 * 109.47214 * 149.99798 * 3 2 1 7 7 C 1.37877 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99545 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46632 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99781 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47055 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.05391 * 53.53425 * 12 11 10 14 14 C 1.54261 * 110.03709 * 292.11710 * 12 11 10 15 15 C 1.54883 * 104.20017 * 217.10653 * 14 12 11 16 16 C 1.54894 * 102.74953 * 37.94043 * 15 14 12 17 17 C 1.53881 * 110.03119 * 174.94852 * 12 11 10 18 18 H 1.08999 * 110.07407 * 238.59826 * 17 12 11 19 19 C 1.50701 * 110.03112 * 0.02562 * 17 12 11 20 20 O 1.20827 * 119.99939 * 85.06185 * 19 17 12 21 21 O 1.34228 * 119.99728 * 265.06304 * 19 17 12 22 22 H 0.97003 * 119.99945 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47521 * 59.99975 * 9 7 2 24 24 H 1.08999 * 109.47153 * 299.99189 * 9 7 2 25 25 H 1.00899 * 110.99990 * 303.94841 * 10 9 7 26 26 H 1.09004 * 109.46568 * 59.99932 * 11 10 9 27 27 H 1.08994 * 109.47087 * 300.00205 * 11 10 9 28 28 H 1.09001 * 110.48547 * 98.42127 * 14 12 11 29 29 H 1.09004 * 110.59720 * 335.84193 * 14 12 11 30 30 H 1.09003 * 110.75607 * 279.62808 * 15 14 12 31 31 H 1.08995 * 110.75922 * 156.25743 * 15 14 12 32 32 H 1.08992 * 110.48852 * 203.38275 * 16 15 14 33 33 H 1.09001 * 110.59442 * 80.78941 * 16 15 14 34 34 H 0.96705 * 116.99822 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5303 -6.0430 0.0005 13 1 3.2331 -5.9128 0.8234 14 6 3.2885 -6.0700 -1.3427 15 6 3.4911 -7.5776 -1.6343 16 6 2.1624 -8.2027 -1.1416 17 6 1.8143 -7.3990 0.1284 18 1 2.1688 -7.9273 1.0135 19 6 0.3243 -7.1900 0.2143 20 8 -0.3293 -7.0789 -0.7958 21 8 -0.2766 -7.1271 1.4129 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8405 -3.5486 -0.7809 26 1 0.8802 -4.9816 -0.8887 27 1 0.8808 -4.9812 0.8913 28 1 4.2508 -5.5670 -1.2477 29 1 2.6927 -5.6061 -2.1288 30 1 4.3360 -7.9703 -1.0686 31 1 3.6264 -7.7497 -2.7021 32 1 2.3029 -9.2561 -0.8998 33 1 1.3816 -8.0855 -1.8931 34 1 -1.2340 -6.9914 1.4174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084307459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:53 Heat of formation + Delta-G solvation = -114.091941 kcal Electronic energy + Delta-G solvation = -16013.702023 eV Core-core repulsion = 13331.352324 eV Total energy + Delta-G solvation = -2682.349699 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68550 -37.94785 -35.94198 -34.88839 -32.45312 -29.95651 -29.31347 -26.34742 -23.74117 -22.78737 -21.51487 -20.49279 -19.23016 -17.94028 -16.79589 -16.11533 -16.03088 -15.10075 -14.83207 -14.51533 -14.38181 -13.15523 -13.03628 -12.78752 -12.69908 -11.88229 -11.79787 -11.54854 -11.29732 -11.20499 -11.07213 -10.85497 -10.72659 -10.68113 -10.56697 -10.35959 -10.15308 -9.84151 -9.15889 -8.47458 -7.30173 -6.01977 -4.04306 2.31040 3.11810 3.32647 3.38412 3.43092 4.39839 4.44543 4.52035 4.80712 5.17530 5.33107 5.33316 5.33775 5.46160 5.54142 5.59762 5.66605 5.77463 5.81884 6.02501 6.13495 6.15875 6.30279 6.34482 6.51283 6.62237 7.25932 7.43068 7.78525 7.99642 8.13134 8.39048 8.61166 9.04866 9.60524 11.09247 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036834 B = 0.006003 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.987188 B = 4663.528588 C = 5170.657278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.686 5.686 11 C 0.051 3.949 12 C -0.076 4.076 13 H 0.094 0.906 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.082 4.082 18 H 0.103 0.897 19 C 0.489 3.511 20 O -0.515 6.515 21 O -0.517 6.517 22 H 0.261 0.739 23 H -0.014 1.014 24 H 0.027 0.973 25 H 0.329 0.671 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -16.555 -0.356 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.316 5.316 11 C -0.079 4.079 12 C -0.095 4.095 13 H 0.113 0.887 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.102 4.102 18 H 0.121 0.879 19 C 0.332 3.668 20 O -0.403 6.403 21 O -0.329 6.329 22 H 0.071 0.929 23 H 0.003 0.997 24 H 0.045 0.955 25 H 0.145 0.855 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 4.372 -16.438 0.063 17.010 hybrid contribution -0.776 1.046 -0.807 1.533 sum 3.595 -15.392 -0.745 15.824 Atomic orbital electron populations 1.69972 1.06123 1.26791 1.50869 1.25007 0.94885 0.99418 0.95335 0.86466 0.79778 0.82945 0.78025 1.20716 1.21231 1.19736 1.21181 0.93509 0.90199 1.50383 0.91908 1.19554 0.90630 0.87408 0.95740 1.60690 1.21139 1.00964 1.48837 1.22222 0.94961 0.90662 1.00014 1.21798 0.97261 0.91011 0.99413 0.88741 1.22463 1.00691 0.96058 0.96600 1.22469 0.96606 0.95693 1.01057 1.22460 0.98938 0.98271 0.95736 1.21784 0.87277 0.99602 1.01551 0.87914 1.23345 0.91585 0.71344 0.80552 1.90701 1.66545 1.46070 1.36966 1.84567 1.29281 1.84457 1.34597 0.92904 0.99656 0.95527 0.85454 0.95459 0.91794 0.90657 0.91250 0.91219 0.91173 0.91140 0.89701 0.73362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.28 5.44 -4.97 -0.03 5.25 16 10 N -0.69 -15.16 6.49 -115.05 -0.75 -15.91 16 11 C 0.05 0.97 3.86 -3.82 -0.01 0.95 16 12 C -0.08 -1.07 3.15 -89.50 -0.28 -1.36 16 13 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.12 -1.53 5.56 -25.08 -0.14 -1.67 16 15 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16 16 C -0.12 -1.25 6.32 -25.07 -0.16 -1.41 16 17 C -0.08 -1.00 3.40 -90.65 -0.31 -1.31 16 18 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 19 C 0.49 7.01 5.13 36.01 0.18 7.20 16 20 O -0.51 -8.88 15.73 -18.75 -0.29 -9.18 16 21 O -0.52 -6.42 13.04 -39.25 -0.51 -6.93 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.33 6.87 7.96 -39.29 -0.31 6.56 16 26 H 0.03 0.56 7.06 -51.93 -0.37 0.19 16 27 H 0.06 1.25 6.93 -51.93 -0.36 0.89 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.99 7.77 -51.93 -0.40 0.58 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.07 6.91 -51.93 -0.36 0.71 16 34 H 0.41 3.54 9.10 45.56 0.41 3.95 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -33.22 280.92 -7.25 -40.47 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.31 Total: 4.53 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.33 Total: -7.46 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.01 Total: -42.62 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.81 Total: -16.11 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.22 -7.25 -40.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084307459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.617 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds