Wall clock time and date at job start Mon Mar 30 2020 03:06:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30669 * 1
3 3 Si 1.86802 * 120.00090 * 2 1
4 4 H 1.48502 * 109.47075 * 240.00537 * 3 2 1
5 5 H 1.48506 * 109.46957 * 0.02562 * 3 2 1
6 6 H 1.48491 * 109.47197 * 120.00174 * 3 2 1
7 7 C 1.40054 * 120.00342 * 180.02562 * 2 1 3
8 8 H 1.07992 * 120.00175 * 179.97438 * 7 2 1
9 9 C 1.46372 * 119.99673 * 359.97438 * 7 2 1
10 10 O 1.21697 * 120.00356 * 359.97438 * 9 7 2
11 11 N 1.34779 * 120.00216 * 180.02562 * 9 7 2
12 12 C 1.46492 * 120.00351 * 179.97438 * 11 9 7
13 13 C 1.52993 * 109.47299 * 179.97438 * 12 11 9
14 14 H 1.08998 * 110.01724 * 53.60886 * 13 12 11
15 15 C 1.54264 * 110.07393 * 292.19484 * 13 12 11
16 16 C 1.54900 * 104.19708 * 217.08143 * 15 13 12
17 17 C 1.54893 * 102.74357 * 37.94035 * 16 15 13
18 18 C 1.53875 * 110.03578 * 175.00244 * 13 12 11
19 19 H 1.09003 * 110.03403 * 238.66866 * 18 13 12
20 20 C 1.52999 * 110.02929 * 0.05072 * 18 13 12
21 21 O 1.42903 * 109.47256 * 185.00362 * 20 18 13
22 22 H 0.96994 * 120.00263 * 359.97438 * 1 2 3
23 23 H 0.97000 * 119.99286 * 359.97438 * 11 9 7
24 24 H 1.09004 * 109.47047 * 59.99649 * 12 11 9
25 25 H 1.08997 * 109.47261 * 300.00186 * 12 11 9
26 26 H 1.09001 * 110.49057 * 335.75546 * 15 13 12
27 27 H 1.08997 * 110.49031 * 98.27275 * 15 13 12
28 28 H 1.09000 * 110.75828 * 156.25546 * 16 15 13
29 29 H 1.08994 * 110.75268 * 279.62831 * 16 15 13
30 30 H 1.09007 * 110.48011 * 203.37530 * 17 16 15
31 31 H 1.08997 * 110.48397 * 80.74180 * 17 16 15
32 32 H 1.08997 * 109.47286 * 64.99922 * 20 18 13
33 33 H 1.09008 * 109.47201 * 304.99703 * 20 18 13
34 34 H 0.96700 * 114.00311 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 3.0944 1.6964 -1.2126
5 1 1.2757 2.7465 0.0006
6 1 3.0945 1.6964 1.2124
7 6 2.0070 -1.2129 -0.0005
8 1 3.0870 -1.2128 -0.0010
9 6 1.2752 -2.4805 -0.0005
10 8 0.0582 -2.4806 0.0004
11 7 1.9490 -3.6477 -0.0005
12 6 1.2166 -4.9164 0.0000
13 6 2.2108 -6.0793 -0.0007
14 1 2.9157 -5.9680 0.8231
15 6 2.9699 -6.1261 -1.3429
16 6 3.1327 -7.6386 -1.6347
17 6 1.7871 -8.2281 -1.1439
18 6 1.4589 -7.4158 0.1258
19 1 1.7982 -7.9528 1.0116
20 6 -0.0477 -7.1634 0.2115
21 8 -0.7253 -8.3997 0.4453
22 1 -0.4850 0.8400 0.0004
23 1 2.9190 -3.6476 -0.0009
24 1 0.5895 -4.9743 -0.8897
25 1 0.5903 -4.9740 0.8902
26 1 2.3857 -5.6468 -2.1285
27 1 3.9442 -5.6470 -1.2471
28 1 3.2649 -7.8140 -2.7024
29 1 3.9660 -8.0537 -1.0679
30 1 1.8993 -9.2851 -0.9023
31 1 1.0120 -8.0883 -1.8973
32 1 -0.3972 -6.7289 -0.7251
33 1 -0.2548 -6.4750 1.0309
34 1 -1.6864 -8.3152 0.5106
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084317918.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:42
Heat of formation + Delta-G solvation = -138.541041 kcal
Electronic energy + Delta-G solvation = -15969.910710 eV
Core-core repulsion = 13286.500818 eV
Total energy + Delta-G solvation = -2683.409892 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.51824 -38.97407 -37.11926 -35.07981 -34.35986 -31.51303 -30.36360 -28.32080
-25.50792 -25.14962 -21.97146 -21.45213 -20.10706 -18.91272 -18.42250 -17.39482
-16.98371 -16.33556 -15.90122 -15.60787 -15.43894 -15.23904 -14.45281 -14.26000
-13.99060 -13.30794 -13.18279 -13.03805 -12.69968 -12.62822 -12.13160 -12.00093
-11.92362 -11.84033 -11.68450 -11.48503 -11.26560 -10.93136 -10.82029 -9.87402
-9.44116 -8.29058 -6.85703 1.40404 1.44004 1.55726 2.25174 2.47368
3.11090 3.23261 3.56704 3.66695 3.73094 3.85568 4.26522 4.36661
4.41583 4.47001 4.51545 4.59447 4.72182 4.81338 4.90345 4.91407
5.04883 5.12310 5.25623 5.31537 5.33331 5.44310 5.50471 5.87906
6.24559 6.28478 6.82071 6.86654 7.56470 8.49540 8.67558
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.043216 B = 0.005916 C = 0.005350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 647.749891 B = 4731.579742 C = 5232.239237
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.824 5.824
2 C 0.028 3.972
3 Si 0.999 3.001
4 H -0.254 1.254
5 H -0.275 1.275
6 H -0.254 1.254
7 C -0.575 4.575
8 H 0.088 0.912
9 C 0.536 3.464
10 O -0.635 6.635
11 N -0.753 5.753
12 C 0.139 3.861
13 C -0.086 4.086
14 H 0.089 0.911
15 C -0.118 4.118
16 C -0.116 4.116
17 C -0.109 4.109
18 C -0.081 4.081
19 H 0.086 0.914
20 C 0.077 3.923
21 O -0.584 6.584
22 H 0.274 0.726
23 H 0.395 0.605
24 H 0.030 0.970
25 H 0.033 0.967
26 H 0.050 0.950
27 H 0.077 0.923
28 H 0.076 0.924
29 H 0.082 0.918
30 H 0.075 0.925
31 H 0.057 0.943
32 H 0.040 0.960
33 H 0.040 0.960
34 H 0.394 0.606
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.761 -12.798 -1.329 14.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.453 5.453
2 C -0.187 4.187
3 Si 0.818 3.182
4 H -0.178 1.178
5 H -0.200 1.200
6 H -0.178 1.178
7 C -0.612 4.612
8 H 0.106 0.894
9 C 0.340 3.660
10 O -0.523 6.523
11 N -0.408 5.408
12 C 0.015 3.985
13 C -0.105 4.105
14 H 0.108 0.892
15 C -0.156 4.156
16 C -0.154 4.154
17 C -0.146 4.146
18 C -0.100 4.100
19 H 0.104 0.896
20 C -0.001 4.001
21 O -0.392 6.392
22 H 0.084 0.916
23 H 0.228 0.772
24 H 0.048 0.952
25 H 0.051 0.949
26 H 0.069 0.931
27 H 0.096 0.904
28 H 0.094 0.906
29 H 0.100 0.900
30 H 0.094 0.906
31 H 0.076 0.924
32 H 0.058 0.942
33 H 0.058 0.942
34 H 0.243 0.757
Dipole moment (debyes) X Y Z Total
from point charges 6.312 -12.970 -1.343 14.487
hybrid contribution -0.429 1.095 0.092 1.180
sum 5.883 -11.875 -1.251 13.311
Atomic orbital electron populations
1.70183 1.09597 1.29004 1.36546 1.26998 0.95520 1.05029 0.91156
0.85056 0.78179 0.74634 0.80315 1.17770 1.19957 1.17795 1.21428
0.94779 0.90143 1.54807 0.89368 1.18632 0.86844 0.84483 0.76063
1.90544 1.16288 1.88087 1.57362 1.45812 1.09273 1.04705 1.80964
1.21223 0.94555 0.83992 0.98772 1.21954 0.96497 0.92139 0.99921
0.89236 1.22428 1.00131 0.97686 0.95326 1.22494 0.97386 0.93838
1.01661 1.22335 0.97392 0.99352 0.95561 1.21711 0.92538 0.95302
1.00420 0.89577 1.22440 0.93282 0.85344 0.99029 1.86365 1.25245
1.32016 1.95594 0.91582 0.77158 0.95155 0.94851 0.93097 0.90425
0.90556 0.89967 0.90621 0.92433 0.94169 0.94216 0.75709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -51.02 11.83 21.84 0.26 -50.76 16
2 C 0.03 1.57 5.50 85.31 0.47 2.04 16
3 Si 1.00 41.02 29.56 68.60 2.03 43.05 16
4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16
5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16
6 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16
7 C -0.58 -32.86 9.54 24.83 0.24 -32.63 16
8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16
9 C 0.54 31.56 7.75 86.36 0.67 32.23 16
10 O -0.64 -43.30 15.02 -4.34 -0.07 -43.36 16
11 N -0.75 -34.14 5.40 -467.42 -2.52 -36.67 16
12 C 0.14 5.43 3.79 86.38 0.33 5.75 16
13 C -0.09 -2.40 2.96 -10.07 -0.03 -2.43 16
14 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16
15 C -0.12 -2.93 6.09 31.67 0.19 -2.74 16
16 C -0.12 -2.28 6.91 31.89 0.22 -2.06 16
17 C -0.11 -2.40 6.22 31.67 0.20 -2.20 16
18 C -0.08 -2.04 3.19 -10.07 -0.03 -2.08 16
19 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
20 C 0.08 2.14 5.15 71.98 0.37 2.51 16
21 O -0.58 -14.57 13.51 -148.98 -2.01 -16.59 16
22 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16
23 H 0.39 15.30 8.34 -92.71 -0.77 14.53 16
24 H 0.03 1.29 7.05 -2.38 -0.02 1.28 16
25 H 0.03 1.41 6.30 -2.39 -0.02 1.40 16
26 H 0.05 1.47 7.76 -2.39 -0.02 1.45 16
27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16
31 H 0.06 1.36 7.76 -2.39 -0.02 1.34 16
32 H 0.04 1.20 7.05 -2.39 -0.02 1.18 16
33 H 0.04 1.22 6.30 -2.38 -0.02 1.21 16
34 H 0.39 6.64 9.12 -74.06 -0.68 5.96 16
Total: -1.00 -76.58 278.37 -0.03 -76.61
By element:
Atomic # 1 Polarization: 29.67 SS G_CDS: -0.34 Total: 29.33 kcal
Atomic # 6 Polarization: -4.23 SS G_CDS: 2.62 Total: -1.61 kcal
Atomic # 7 Polarization: -85.17 SS G_CDS: -2.26 Total: -87.43 kcal
Atomic # 8 Polarization: -57.87 SS G_CDS: -2.08 Total: -59.95 kcal
Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal
Total: -76.58 -0.03 -76.61 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084317918.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.932 kcal
(2) G-P(sol) polarization free energy of solvation -76.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.511 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds