Wall clock time and date at job start Mon Mar 30 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47075 * 240.00537 * 3 2 1 5 5 H 1.48506 * 109.46957 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47197 * 120.00174 * 3 2 1 7 7 C 1.40054 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00175 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99673 * 359.97438 * 7 2 1 10 10 O 1.21697 * 120.00356 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00216 * 180.02562 * 9 7 2 12 12 C 1.46492 * 120.00351 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47299 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.01724 * 53.60886 * 13 12 11 15 15 C 1.54264 * 110.07393 * 292.19484 * 13 12 11 16 16 C 1.54900 * 104.19708 * 217.08143 * 15 13 12 17 17 C 1.54893 * 102.74357 * 37.94035 * 16 15 13 18 18 C 1.53875 * 110.03578 * 175.00244 * 13 12 11 19 19 H 1.09003 * 110.03403 * 238.66866 * 18 13 12 20 20 C 1.52999 * 110.02929 * 0.05072 * 18 13 12 21 21 O 1.42903 * 109.47256 * 185.00362 * 20 18 13 22 22 H 0.96994 * 120.00263 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99286 * 359.97438 * 11 9 7 24 24 H 1.09004 * 109.47047 * 59.99649 * 12 11 9 25 25 H 1.08997 * 109.47261 * 300.00186 * 12 11 9 26 26 H 1.09001 * 110.49057 * 335.75546 * 15 13 12 27 27 H 1.08997 * 110.49031 * 98.27275 * 15 13 12 28 28 H 1.09000 * 110.75828 * 156.25546 * 16 15 13 29 29 H 1.08994 * 110.75268 * 279.62831 * 16 15 13 30 30 H 1.09007 * 110.48011 * 203.37530 * 17 16 15 31 31 H 1.08997 * 110.48397 * 80.74180 * 17 16 15 32 32 H 1.08997 * 109.47286 * 64.99922 * 20 18 13 33 33 H 1.09008 * 109.47201 * 304.99703 * 20 18 13 34 34 H 0.96700 * 114.00311 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6964 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0582 -2.4806 0.0004 11 7 1.9490 -3.6477 -0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.2108 -6.0793 -0.0007 14 1 2.9157 -5.9680 0.8231 15 6 2.9699 -6.1261 -1.3429 16 6 3.1327 -7.6386 -1.6347 17 6 1.7871 -8.2281 -1.1439 18 6 1.4589 -7.4158 0.1258 19 1 1.7982 -7.9528 1.0116 20 6 -0.0477 -7.1634 0.2115 21 8 -0.7253 -8.3997 0.4453 22 1 -0.4850 0.8400 0.0004 23 1 2.9190 -3.6476 -0.0009 24 1 0.5895 -4.9743 -0.8897 25 1 0.5903 -4.9740 0.8902 26 1 2.3857 -5.6468 -2.1285 27 1 3.9442 -5.6470 -1.2471 28 1 3.2649 -7.8140 -2.7024 29 1 3.9660 -8.0537 -1.0679 30 1 1.8993 -9.2851 -0.9023 31 1 1.0120 -8.0883 -1.8973 32 1 -0.3972 -6.7289 -0.7251 33 1 -0.2548 -6.4750 1.0309 34 1 -1.6864 -8.3152 0.5106 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084317918.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:42 Heat of formation + Delta-G solvation = -138.541041 kcal Electronic energy + Delta-G solvation = -15969.910710 eV Core-core repulsion = 13286.500818 eV Total energy + Delta-G solvation = -2683.409892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51824 -38.97407 -37.11926 -35.07981 -34.35986 -31.51303 -30.36360 -28.32080 -25.50792 -25.14962 -21.97146 -21.45213 -20.10706 -18.91272 -18.42250 -17.39482 -16.98371 -16.33556 -15.90122 -15.60787 -15.43894 -15.23904 -14.45281 -14.26000 -13.99060 -13.30794 -13.18279 -13.03805 -12.69968 -12.62822 -12.13160 -12.00093 -11.92362 -11.84033 -11.68450 -11.48503 -11.26560 -10.93136 -10.82029 -9.87402 -9.44116 -8.29058 -6.85703 1.40404 1.44004 1.55726 2.25174 2.47368 3.11090 3.23261 3.56704 3.66695 3.73094 3.85568 4.26522 4.36661 4.41583 4.47001 4.51545 4.59447 4.72182 4.81338 4.90345 4.91407 5.04883 5.12310 5.25623 5.31537 5.33331 5.44310 5.50471 5.87906 6.24559 6.28478 6.82071 6.86654 7.56470 8.49540 8.67558 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.043216 B = 0.005916 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.749891 B = 4731.579742 C = 5232.239237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.536 3.464 10 O -0.635 6.635 11 N -0.753 5.753 12 C 0.139 3.861 13 C -0.086 4.086 14 H 0.089 0.911 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.081 4.081 19 H 0.086 0.914 20 C 0.077 3.923 21 O -0.584 6.584 22 H 0.274 0.726 23 H 0.395 0.605 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.761 -12.798 -1.329 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.612 4.612 8 H 0.106 0.894 9 C 0.340 3.660 10 O -0.523 6.523 11 N -0.408 5.408 12 C 0.015 3.985 13 C -0.105 4.105 14 H 0.108 0.892 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.100 4.100 19 H 0.104 0.896 20 C -0.001 4.001 21 O -0.392 6.392 22 H 0.084 0.916 23 H 0.228 0.772 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.312 -12.970 -1.343 14.487 hybrid contribution -0.429 1.095 0.092 1.180 sum 5.883 -11.875 -1.251 13.311 Atomic orbital electron populations 1.70183 1.09597 1.29004 1.36546 1.26998 0.95520 1.05029 0.91156 0.85056 0.78179 0.74634 0.80315 1.17770 1.19957 1.17795 1.21428 0.94779 0.90143 1.54807 0.89368 1.18632 0.86844 0.84483 0.76063 1.90544 1.16288 1.88087 1.57362 1.45812 1.09273 1.04705 1.80964 1.21223 0.94555 0.83992 0.98772 1.21954 0.96497 0.92139 0.99921 0.89236 1.22428 1.00131 0.97686 0.95326 1.22494 0.97386 0.93838 1.01661 1.22335 0.97392 0.99352 0.95561 1.21711 0.92538 0.95302 1.00420 0.89577 1.22440 0.93282 0.85344 0.99029 1.86365 1.25245 1.32016 1.95594 0.91582 0.77158 0.95155 0.94851 0.93097 0.90425 0.90556 0.89967 0.90621 0.92433 0.94169 0.94216 0.75709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.02 11.83 21.84 0.26 -50.76 16 2 C 0.03 1.57 5.50 85.31 0.47 2.04 16 3 Si 1.00 41.02 29.56 68.60 2.03 43.05 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.58 -32.86 9.54 24.83 0.24 -32.63 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.54 31.56 7.75 86.36 0.67 32.23 16 10 O -0.64 -43.30 15.02 -4.34 -0.07 -43.36 16 11 N -0.75 -34.14 5.40 -467.42 -2.52 -36.67 16 12 C 0.14 5.43 3.79 86.38 0.33 5.75 16 13 C -0.09 -2.40 2.96 -10.07 -0.03 -2.43 16 14 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.12 -2.93 6.09 31.67 0.19 -2.74 16 16 C -0.12 -2.28 6.91 31.89 0.22 -2.06 16 17 C -0.11 -2.40 6.22 31.67 0.20 -2.20 16 18 C -0.08 -2.04 3.19 -10.07 -0.03 -2.08 16 19 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 20 C 0.08 2.14 5.15 71.98 0.37 2.51 16 21 O -0.58 -14.57 13.51 -148.98 -2.01 -16.59 16 22 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 23 H 0.39 15.30 8.34 -92.71 -0.77 14.53 16 24 H 0.03 1.29 7.05 -2.38 -0.02 1.28 16 25 H 0.03 1.41 6.30 -2.39 -0.02 1.40 16 26 H 0.05 1.47 7.76 -2.39 -0.02 1.45 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.06 1.36 7.76 -2.39 -0.02 1.34 16 32 H 0.04 1.20 7.05 -2.39 -0.02 1.18 16 33 H 0.04 1.22 6.30 -2.38 -0.02 1.21 16 34 H 0.39 6.64 9.12 -74.06 -0.68 5.96 16 Total: -1.00 -76.58 278.37 -0.03 -76.61 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.34 Total: 29.33 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 2.62 Total: -1.61 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.26 Total: -87.43 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -2.08 Total: -59.95 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -76.58 -0.03 -76.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084317918.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.932 kcal (2) G-P(sol) polarization free energy of solvation -76.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds