Wall clock time and date at job start Mon Mar 30 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99761 * 2 1 4 4 H 1.48504 * 109.46912 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47489 * 29.99607 * 3 2 1 6 6 H 1.48497 * 109.47265 * 150.00108 * 3 2 1 7 7 C 1.37876 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46695 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46972 * 179.97438 * 10 9 7 12 12 C 1.47897 * 110.99555 * 69.87474 * 11 10 9 13 13 C 1.54000 * 107.05672 * 145.84575 * 12 11 10 14 14 C 1.54598 * 105.22213 * 358.72428 * 13 12 11 15 15 H 1.09003 * 110.72246 * 96.45403 * 14 13 12 16 16 C 1.53005 * 110.72373 * 219.73164 * 14 13 12 17 17 C 1.50699 * 109.47382 * 293.55121 * 16 14 13 18 18 O 1.20827 * 119.99952 * 359.97438 * 17 16 14 19 19 O 1.34230 * 120.00372 * 179.97438 * 17 16 14 20 20 C 1.48533 * 111.00245 * 187.27424 * 11 10 9 21 21 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47073 * 60.00456 * 9 7 2 23 23 H 1.08991 * 109.47159 * 300.00059 * 9 7 2 24 24 H 1.09004 * 109.46873 * 60.00474 * 10 9 7 25 25 H 1.08991 * 109.47481 * 300.00003 * 10 9 7 26 26 H 1.09000 * 109.91881 * 26.49521 * 12 11 10 27 27 H 1.09002 * 110.08496 * 265.28456 * 12 11 10 28 28 H 1.09002 * 110.31026 * 117.69182 * 13 12 11 29 29 H 1.09000 * 110.30915 * 239.76211 * 13 12 11 30 30 H 1.09000 * 109.46934 * 53.54799 * 16 14 13 31 31 H 1.08992 * 109.47087 * 173.54757 * 16 14 13 32 32 H 0.96698 * 117.00081 * 179.97438 * 19 17 16 33 33 H 1.09003 * 110.66452 * 318.71648 * 20 11 10 34 34 H 1.08995 * 110.66642 * 81.67547 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6619 0.0015 11 7 1.5109 -4.9342 0.0032 12 6 0.8331 -5.1566 -1.2923 13 6 0.8598 -6.6726 -1.5618 14 6 1.6187 -7.2848 -0.3621 15 1 0.9201 -7.6464 0.3925 16 6 2.5471 -8.4092 -0.8255 17 6 1.7231 -9.5587 -1.3459 18 8 0.5170 -9.4862 -1.3457 19 8 2.3290 -10.6631 -1.8096 20 6 2.4362 -6.0828 0.1786 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8727 -3.6038 0.8910 25 1 2.8713 -3.6046 -0.8889 26 1 1.3643 -4.6293 -2.0847 27 1 -0.1980 -4.8069 -1.2402 28 1 -0.1555 -7.0666 -1.6081 29 1 1.3891 -6.8824 -2.4912 30 1 3.1973 -8.0400 -1.6186 31 1 3.1543 -8.7481 0.0138 32 1 1.7586 -11.3740 -2.1326 33 1 3.3426 -5.9399 -0.4098 34 1 2.6807 -6.2225 1.2316 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084380303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:02 Heat of formation + Delta-G solvation = -104.284924 kcal Electronic energy + Delta-G solvation = -15569.298269 eV Core-core repulsion = 12887.373834 eV Total energy + Delta-G solvation = -2681.924435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.52856 -38.59438 -36.31915 -34.12292 -32.56676 -30.23593 -28.76401 -26.84164 -24.18067 -22.03666 -21.55051 -20.29814 -19.27840 -18.20836 -16.83876 -16.38098 -16.16225 -15.44871 -14.80604 -14.45929 -13.66006 -13.59916 -13.26062 -12.71158 -12.60735 -12.29930 -11.83295 -11.72630 -11.42275 -11.07998 -11.01076 -10.85673 -10.78091 -10.60987 -10.51104 -10.35757 -9.78280 -9.35117 -9.10309 -8.31850 -7.80155 -5.97087 -3.99826 2.04598 2.84539 3.33261 3.39470 3.42679 4.33971 4.49074 4.69467 4.80430 4.90541 5.17060 5.33413 5.38654 5.39416 5.45365 5.60543 5.84914 5.99095 6.03308 6.18237 6.23439 6.32030 6.40145 6.48017 6.57954 6.98598 7.45692 7.51929 7.71084 7.78627 7.92035 8.11221 8.45679 9.07713 9.63738 11.14305 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.080041 B = 0.004380 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.735609 B = 6391.194469 C = 6562.573043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.055 3.945 11 N -0.516 5.516 12 C 0.040 3.960 13 C -0.122 4.122 14 C -0.082 4.082 15 H 0.091 0.909 16 C -0.105 4.105 17 C 0.476 3.524 18 O -0.508 6.508 19 O -0.522 6.522 20 C 0.039 3.961 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.025 0.975 24 H 0.061 0.939 25 H 0.022 0.978 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.408 0.592 33 H 0.041 0.959 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 -18.496 -2.989 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.072 4.072 11 N -0.240 5.240 12 C -0.088 4.088 13 C -0.160 4.160 14 C -0.101 4.101 15 H 0.110 0.890 16 C -0.143 4.143 17 C 0.319 3.681 18 O -0.395 6.395 19 O -0.335 6.335 20 C -0.089 4.089 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.266 0.734 33 H 0.059 0.941 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.876 -17.976 -2.411 18.781 hybrid contribution 0.673 0.482 -0.949 1.259 sum 5.549 -17.494 -3.360 18.658 Atomic orbital electron populations 1.69975 1.06031 1.26550 1.50638 1.24997 0.94824 0.99165 0.95334 0.86600 0.79844 0.83535 0.78035 1.20734 1.21195 1.19889 1.21201 0.92950 0.91113 1.50890 0.92823 1.19052 0.93948 0.90030 0.97862 1.22511 0.96827 0.88915 0.98976 1.64822 1.26219 1.02160 1.30836 1.22822 1.00823 0.94274 0.90918 1.22490 1.01406 0.95455 0.96661 1.21971 0.96528 0.92939 0.98671 0.89015 1.21447 0.98529 0.91323 1.02996 1.23625 0.87679 0.82856 0.73975 1.90741 1.16162 1.80725 1.51909 1.84550 1.45926 1.27998 1.74989 1.23244 0.94416 0.90428 1.00797 0.93002 0.96589 0.95707 0.92084 0.96000 0.93806 0.90297 0.90534 0.92424 0.87650 0.87465 0.73378 0.94075 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.76 5.03 -27.88 -0.14 0.62 16 10 C 0.05 1.18 4.70 -3.82 -0.02 1.16 16 11 N -0.52 -9.60 5.27 -230.35 -1.21 -10.81 16 12 C 0.04 0.69 5.79 -2.75 -0.02 0.67 16 13 C -0.12 -1.71 5.47 -25.37 -0.14 -1.85 16 14 C -0.08 -1.02 2.66 -88.67 -0.24 -1.25 16 15 H 0.09 1.22 8.05 -51.93 -0.42 0.81 16 16 C -0.11 -0.96 5.22 -27.88 -0.15 -1.11 16 17 C 0.48 4.88 8.12 36.01 0.29 5.17 16 18 O -0.51 -6.89 15.66 -18.75 -0.29 -7.18 16 19 O -0.52 -4.03 13.42 -39.26 -0.53 -4.55 16 20 C 0.04 0.56 5.99 -1.81 -0.01 0.54 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.45 7.52 -51.93 -0.39 0.06 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.28 8.11 -51.93 -0.42 0.86 16 25 H 0.02 0.46 7.82 -51.93 -0.41 0.06 16 26 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 29 H 0.06 0.73 7.80 -51.93 -0.41 0.32 16 30 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.41 1.52 9.10 45.56 0.41 1.93 16 33 H 0.04 0.54 7.93 -51.93 -0.41 0.13 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 284.37 15.07 4.29 4.29 Total: -1.00 -33.23 284.37 -7.34 -40.58 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.48 Total: -2.81 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.82 Total: -9.77 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.48 Total: -37.33 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.82 Total: -11.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.23 -7.34 -40.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.710 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds