Wall clock time and date at job start Mon Mar 30 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99761 * 2 1 4 4 H 1.48504 * 109.46912 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47489 * 29.99607 * 3 2 1 6 6 H 1.48497 * 109.47265 * 150.00108 * 3 2 1 7 7 C 1.37876 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46695 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46972 * 179.97438 * 10 9 7 12 12 C 1.47897 * 110.99555 * 69.87474 * 11 10 9 13 13 C 1.54000 * 107.05672 * 145.84575 * 12 11 10 14 14 C 1.54598 * 105.22213 * 358.72428 * 13 12 11 15 15 H 1.09003 * 110.72246 * 96.45403 * 14 13 12 16 16 C 1.53005 * 110.72373 * 219.73164 * 14 13 12 17 17 C 1.50699 * 109.47382 * 293.55121 * 16 14 13 18 18 O 1.20827 * 119.99952 * 359.97438 * 17 16 14 19 19 O 1.34230 * 120.00372 * 179.97438 * 17 16 14 20 20 C 1.48533 * 111.00245 * 187.27424 * 11 10 9 21 21 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47073 * 60.00456 * 9 7 2 23 23 H 1.08991 * 109.47159 * 300.00059 * 9 7 2 24 24 H 1.09004 * 109.46873 * 60.00474 * 10 9 7 25 25 H 1.08991 * 109.47481 * 300.00003 * 10 9 7 26 26 H 1.09000 * 109.91881 * 26.49521 * 12 11 10 27 27 H 1.09002 * 110.08496 * 265.28456 * 12 11 10 28 28 H 1.09002 * 110.31026 * 117.69182 * 13 12 11 29 29 H 1.09000 * 110.30915 * 239.76211 * 13 12 11 30 30 H 1.09000 * 109.46934 * 53.54799 * 16 14 13 31 31 H 1.08992 * 109.47087 * 173.54757 * 16 14 13 32 32 H 0.96698 * 117.00081 * 179.97438 * 19 17 16 33 33 H 1.09003 * 110.66452 * 318.71648 * 20 11 10 34 34 H 1.08995 * 110.66642 * 81.67547 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6619 0.0015 11 7 1.5109 -4.9342 0.0032 12 6 0.8331 -5.1566 -1.2923 13 6 0.8598 -6.6726 -1.5618 14 6 1.6187 -7.2848 -0.3621 15 1 0.9201 -7.6464 0.3925 16 6 2.5471 -8.4092 -0.8255 17 6 1.7231 -9.5587 -1.3459 18 8 0.5170 -9.4862 -1.3457 19 8 2.3290 -10.6631 -1.8096 20 6 2.4362 -6.0828 0.1786 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8727 -3.6038 0.8910 25 1 2.8713 -3.6046 -0.8889 26 1 1.3643 -4.6293 -2.0847 27 1 -0.1980 -4.8069 -1.2402 28 1 -0.1555 -7.0666 -1.6081 29 1 1.3891 -6.8824 -2.4912 30 1 3.1973 -8.0400 -1.6186 31 1 3.1543 -8.7481 0.0138 32 1 1.7586 -11.3740 -2.1326 33 1 3.3426 -5.9399 -0.4098 34 1 2.6807 -6.2225 1.2316 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084380303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:02 Heat of formation + Delta-G solvation = -128.621907 kcal Electronic energy + Delta-G solvation = -15570.353600 eV Core-core repulsion = 12887.373834 eV Total energy + Delta-G solvation = -2682.979766 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34812 -39.82904 -37.08377 -35.81995 -34.30487 -31.72839 -30.27025 -28.12493 -26.01580 -23.27359 -22.88458 -21.62298 -20.54425 -18.95067 -18.55049 -17.72993 -16.98304 -16.60979 -16.45704 -16.21617 -15.14194 -14.92764 -14.31167 -14.13357 -13.86888 -13.77048 -13.27426 -12.98735 -12.88853 -12.63952 -12.45725 -12.36550 -12.14217 -11.89826 -11.70311 -11.56470 -11.45304 -11.29202 -11.19366 -10.55499 -9.26308 -8.19717 -6.31980 1.29926 1.40529 1.42594 1.53816 2.18696 2.40978 3.13589 3.15937 3.68444 3.70900 3.87764 4.21362 4.31280 4.42928 4.47766 4.57430 4.66190 4.69507 4.78005 4.84394 4.94409 5.06411 5.09092 5.21586 5.35613 5.45951 5.63540 5.70211 5.79261 6.05760 6.18940 6.32929 6.85914 7.07294 7.37605 8.92709 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.080041 B = 0.004380 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.735609 B = 6391.194469 C = 6562.573043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.073 3.927 11 N -0.539 5.539 12 C 0.039 3.961 13 C -0.112 4.112 14 C -0.073 4.073 15 H 0.080 0.920 16 C -0.099 4.099 17 C 0.482 3.518 18 O -0.550 6.550 19 O -0.515 6.515 20 C 0.041 3.959 21 H 0.263 0.737 22 H -0.012 1.012 23 H -0.011 1.011 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.426 0.574 33 H 0.060 0.940 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 -19.392 -3.169 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.002 4.002 10 C -0.055 4.055 11 N -0.263 5.263 12 C -0.090 4.090 13 C -0.151 4.151 14 C -0.092 4.092 15 H 0.098 0.902 16 C -0.137 4.137 17 C 0.326 3.674 18 O -0.440 6.440 19 O -0.329 6.329 20 C -0.087 4.087 21 H 0.072 0.928 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.155 0.845 32 H 0.287 0.713 33 H 0.078 0.922 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.342 -18.919 -2.599 20.460 hybrid contribution -0.129 0.685 -0.901 1.139 sum 7.213 -18.234 -3.501 19.919 Atomic orbital electron populations 1.70127 1.08001 1.27796 1.51493 1.26021 0.95745 1.03536 0.94590 0.85388 0.78679 0.78096 0.78507 1.19733 1.20807 1.18419 1.21647 0.93622 0.92178 1.50865 0.91848 1.18894 0.94282 0.92332 0.94732 1.22129 0.95313 0.88635 0.99428 1.64683 1.27581 1.02517 1.31531 1.22777 0.99044 0.96817 0.90324 1.22403 1.01589 0.92635 0.98428 1.21840 0.96511 0.93438 0.97402 0.90193 1.21414 0.97765 0.89792 1.04708 1.23758 0.87038 0.83435 0.73135 1.90746 1.17919 1.81593 1.53784 1.84502 1.46036 1.27926 1.74388 1.23345 0.94293 0.88865 1.02149 0.92780 0.99409 0.99262 0.91419 0.95499 0.94624 0.93058 0.91578 0.90540 0.85685 0.84539 0.71302 0.92225 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.04 1.94 5.03 29.85 0.15 2.09 16 10 C 0.07 3.13 4.70 86.30 0.41 3.53 16 11 N -0.54 -20.07 5.27 -882.69 -4.65 -24.71 16 12 C 0.04 1.37 5.79 86.45 0.50 1.87 16 13 C -0.11 -3.07 5.47 31.48 0.17 -2.89 16 14 C -0.07 -1.66 2.66 -9.53 -0.03 -1.69 16 15 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 16 C -0.10 -1.46 5.22 29.85 0.16 -1.30 16 17 C 0.48 8.61 8.12 71.24 0.58 9.19 16 18 O -0.55 -14.22 15.66 21.96 0.34 -13.87 16 19 O -0.51 -6.31 13.42 -51.42 -0.69 -7.00 16 20 C 0.04 1.06 5.99 86.70 0.52 1.58 16 21 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 22 H -0.01 -0.75 7.52 -2.39 -0.02 -0.77 16 23 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H 0.07 2.79 8.11 -2.39 -0.02 2.77 16 25 H 0.03 1.12 7.82 -2.39 -0.02 1.10 16 26 H 0.04 1.30 7.57 -2.39 -0.02 1.28 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 1.95 7.74 -2.39 -0.02 1.93 16 29 H 0.08 1.79 7.80 -2.39 -0.02 1.77 16 30 H 0.13 1.44 8.08 -2.39 -0.02 1.42 16 31 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.43 2.01 9.10 -74.06 -0.67 1.33 16 33 H 0.06 1.37 7.93 -2.39 -0.02 1.35 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -73.55 284.37 0.87 -72.67 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 0.41 Total: 3.03 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 3.15 Total: -18.66 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -4.36 Total: -82.90 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.35 Total: -20.88 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.55 0.87 -72.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.947 kcal (2) G-P(sol) polarization free energy of solvation -73.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds