Wall clock time and date at job start Mon Mar 30 2020 02:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00350 * 2 1 4 4 H 1.48498 * 109.46642 * 269.99797 * 3 2 1 5 5 H 1.48496 * 109.46756 * 29.99423 * 3 2 1 6 6 H 1.48493 * 109.47277 * 149.99865 * 3 2 1 7 7 C 1.38815 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00142 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00283 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46961 * 185.00401 * 11 10 9 13 13 C 1.53005 * 109.47173 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47237 * 59.99380 * 13 12 11 15 15 C 1.50706 * 109.47215 * 60.00375 * 14 13 12 16 16 O 1.20825 * 119.99859 * 359.97438 * 15 14 13 17 17 O 1.34224 * 120.00295 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47228 * 300.00492 * 14 13 12 19 19 C 1.52992 * 109.47446 * 59.99859 * 18 14 13 20 20 H 0.96998 * 119.99781 * 0.02562 * 1 2 3 21 21 H 0.96998 * 119.99463 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.47291 * 60.00332 * 10 9 7 23 23 H 1.09004 * 109.47116 * 300.00518 * 10 9 7 24 24 H 1.09004 * 109.47195 * 304.99637 * 11 10 9 25 25 H 1.08995 * 109.47562 * 59.99458 * 12 11 10 26 26 H 1.09003 * 109.46995 * 299.99352 * 12 11 10 27 27 H 1.09003 * 109.46631 * 299.99575 * 13 12 11 28 28 H 1.08997 * 109.47406 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.47459 * 180.02562 * 14 13 12 30 30 H 0.96700 * 117.00196 * 179.97438 * 17 15 14 31 31 H 1.09005 * 109.47327 * 180.02562 * 18 14 13 32 32 H 1.09003 * 109.47339 * 299.99590 * 18 14 13 33 33 H 1.08997 * 109.47438 * 180.02562 * 19 18 14 34 34 H 1.09004 * 109.47270 * 60.00327 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3802 -3.5111 -0.1258 13 6 7.8845 -3.2316 -0.1252 14 6 8.2741 -2.5394 1.1824 15 6 7.9287 -3.4326 2.3460 16 8 7.4224 -4.5119 2.1496 17 8 8.1826 -3.0288 3.6007 18 6 7.5101 -1.2198 1.3082 19 6 6.0059 -1.4992 1.3076 20 1 -0.4850 0.8400 -0.0004 21 1 3.8646 -0.3622 -0.0004 22 1 3.8485 -3.0427 -0.8897 23 1 3.8490 -3.0424 0.8902 24 1 5.8658 -1.5455 -0.8419 25 1 6.1023 -4.0045 -1.0571 26 1 6.1308 -4.1570 0.7160 27 1 8.1343 -2.5855 -0.9668 28 1 8.4288 -4.1717 -0.2144 29 1 9.3457 -2.3398 1.1827 30 1 7.9431 -3.6359 4.3142 31 1 7.7880 -0.7263 2.2396 32 1 7.7600 -0.5736 0.4666 33 1 5.4617 -0.5590 1.3967 34 1 5.7561 -2.1452 2.1492 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086480669.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:43 Heat of formation + Delta-G solvation = -124.954536 kcal Electronic energy + Delta-G solvation = -16307.287412 eV Core-core repulsion = 13624.466675 eV Total energy + Delta-G solvation = -2682.820736 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77636 -39.20766 -37.09521 -36.46248 -33.96989 -32.07592 -31.57702 -27.60312 -25.09694 -23.90190 -23.29983 -21.75934 -20.58934 -19.67718 -18.85743 -17.20785 -17.06827 -16.56086 -16.09962 -15.66950 -15.29005 -14.78111 -14.68986 -14.44859 -14.08104 -13.74277 -13.14844 -12.99324 -12.81330 -12.79391 -12.62780 -12.50726 -12.15063 -11.92132 -11.86934 -11.75007 -11.09363 -11.01565 -10.94148 -10.87568 -9.32243 -8.05086 -5.39190 1.29856 1.35611 1.41028 1.48426 2.24646 2.47135 3.25548 3.56623 3.69248 3.77077 3.88099 4.07792 4.34095 4.41166 4.45596 4.54511 4.59914 4.64102 4.84837 4.93379 5.01094 5.11706 5.16820 5.18923 5.27206 5.32928 5.44315 5.54315 5.72196 5.81435 6.18971 7.05467 7.06993 7.80782 8.03305 9.16820 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039743 B = 0.006670 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.361445 B = 4196.857506 C = 4341.582935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.248 1.248 7 C -0.242 4.242 8 H 0.049 0.951 9 N -0.754 5.754 10 C 0.158 3.842 11 C -0.088 4.088 12 C -0.124 4.124 13 C -0.098 4.098 14 C -0.076 4.076 15 C 0.481 3.519 16 O -0.545 6.545 17 O -0.516 6.516 18 C -0.104 4.104 19 C -0.117 4.117 20 H 0.259 0.741 21 H 0.368 0.632 22 H 0.020 0.980 23 H 0.006 0.994 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.422 0.578 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.718 -2.890 3.260 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.172 1.172 7 C -0.373 4.373 8 H 0.067 0.933 9 N -0.400 5.400 10 C 0.032 3.968 11 C -0.106 4.106 12 C -0.162 4.162 13 C -0.135 4.135 14 C -0.095 4.095 15 C 0.325 3.675 16 O -0.435 6.435 17 O -0.329 6.329 18 C -0.141 4.141 19 C -0.155 4.155 20 H 0.068 0.932 21 H 0.202 0.798 22 H 0.038 0.962 23 H 0.025 0.975 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.093 0.907 29 H 0.160 0.840 30 H 0.283 0.717 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 23.491 -3.029 2.907 23.863 hybrid contribution -0.831 0.215 0.637 1.069 sum 22.660 -2.814 3.543 23.107 Atomic orbital electron populations 1.69903 1.07300 1.26868 1.59498 1.25602 0.96238 1.01595 1.02281 0.85335 0.78734 0.78899 0.78401 1.19972 1.22019 1.17189 1.19060 0.82972 0.93428 1.41864 0.93304 1.42679 1.02314 1.04138 1.90875 1.20810 0.91644 0.87216 0.97159 1.21319 0.92645 0.98106 0.98551 1.21723 0.95660 0.96085 1.02694 1.21444 0.94975 1.01327 0.95734 1.21239 1.04243 0.94311 0.89712 1.24007 0.73256 0.85566 0.84665 1.90664 1.41534 1.25291 1.86060 1.84503 1.78103 1.52975 1.17292 1.21562 0.92484 0.95223 1.04817 1.21594 0.97196 1.00028 0.96633 0.93221 0.79776 0.96225 0.97547 0.89925 0.91664 0.91754 0.88150 0.90723 0.84044 0.71734 0.89698 0.88136 0.92653 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.87 13.97 21.65 0.30 -64.57 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.96 45.92 27.74 68.60 1.90 47.82 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 7 C -0.24 -14.57 10.47 84.03 0.88 -13.69 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 9 N -0.75 -36.99 5.13 -343.46 -1.76 -38.75 16 10 C 0.16 6.54 5.65 86.38 0.49 7.03 16 11 C -0.09 -2.63 2.23 -10.79 -0.02 -2.66 16 12 C -0.12 -3.24 4.91 30.60 0.15 -3.09 16 13 C -0.10 -1.77 5.09 30.59 0.16 -1.61 16 14 C -0.08 -1.27 3.11 -11.54 -0.04 -1.31 16 15 C 0.48 10.40 6.11 71.24 0.44 10.83 16 16 O -0.54 -15.59 14.42 21.97 0.32 -15.27 16 17 O -0.52 -8.80 13.33 -51.35 -0.68 -9.48 16 18 C -0.10 -1.90 5.39 30.59 0.16 -1.74 16 19 C -0.12 -3.28 4.86 30.59 0.15 -3.13 16 20 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 21 H 0.37 16.75 4.71 -92.71 -0.44 16.32 16 22 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.06 2.01 5.52 -2.39 -0.01 2.00 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 29 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.42 4.26 9.10 -74.06 -0.67 3.58 16 31 H 0.08 1.42 8.11 -2.38 -0.02 1.40 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.75 7.18 -2.39 -0.02 1.73 16 34 H 0.04 1.23 7.22 -2.39 -0.02 1.21 16 Total: -1.00 -75.89 271.94 2.84 -73.05 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.07 Total: 20.10 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 2.83 Total: -12.90 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -1.46 Total: -103.32 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.37 Total: -24.75 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -75.89 2.84 -73.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086480669.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.901 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds