Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 110.33083 * 2 1 4 4 O 1.21271 * 119.99905 * 97.24626 * 3 2 1 5 5 N 1.34779 * 119.99528 * 277.25314 * 3 2 1 6 6 C 1.46500 * 119.99649 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47110 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47127 * 179.97438 * 7 6 5 9 9 H 1.08008 * 120.00087 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00220 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99752 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00364 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47109 * 89.99959 * 12 10 8 14 14 H 1.48499 * 109.47412 * 209.99677 * 12 10 8 15 15 H 1.48504 * 109.47259 * 329.99859 * 12 10 8 16 16 C 1.54472 * 110.37693 * 122.24821 * 2 1 3 17 17 C 1.54505 * 104.06681 * 142.81150 * 16 2 1 18 18 C 1.54487 * 104.06179 * 0.02562 * 17 16 2 19 19 O 1.44421 * 104.79872 * 336.02098 * 18 17 16 20 20 H 1.08997 * 109.46897 * 297.74737 * 1 2 3 21 21 H 1.08997 * 109.47526 * 57.75250 * 1 2 3 22 22 H 1.09007 * 109.46453 * 177.75373 * 1 2 3 23 23 H 0.96999 * 120.00631 * 359.97438 * 5 3 2 24 24 H 1.08996 * 109.47218 * 299.99891 * 6 5 3 25 25 H 1.09004 * 109.47292 * 59.99715 * 6 5 3 26 26 H 1.08996 * 109.47056 * 300.00069 * 7 6 5 27 27 H 1.08998 * 109.46806 * 60.00318 * 7 6 5 28 28 H 0.96997 * 119.99831 * 180.02562 * 11 10 8 29 29 H 1.09003 * 110.51251 * 24.16627 * 16 2 1 30 30 H 1.08997 * 110.51471 * 261.46082 * 16 2 1 31 31 H 1.09003 * 110.51737 * 241.36166 * 17 16 2 32 32 H 1.09000 * 110.51297 * 118.64595 * 17 16 2 33 33 H 1.08997 * 110.37332 * 94.85398 * 18 17 16 34 34 H 1.09004 * 110.37288 * 217.19057 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4132 0.0000 4 8 2.3885 1.9357 1.0419 5 7 2.1495 2.0962 -1.1579 6 6 2.6580 3.4701 -1.1579 7 6 2.6651 4.0114 -2.5890 8 6 3.1876 5.4249 -2.5889 9 1 3.4852 5.8905 -1.6609 10 6 3.2856 6.1237 -3.7733 11 7 2.9237 5.5565 -4.9033 12 14 3.9339 7.8756 -3.7733 13 1 5.4083 7.8578 -3.9498 14 1 3.3111 8.6339 -4.8879 15 1 3.5978 8.5278 -2.4822 16 6 2.0679 -0.7727 1.2247 17 6 3.3179 -1.5048 0.6874 18 6 3.3878 -1.0873 -0.7983 19 8 2.0333 -0.7240 -1.1435 20 1 -0.3633 0.4784 0.9095 21 1 -0.3634 0.5483 -0.8691 22 1 -0.3632 -1.0270 -0.0403 23 1 1.8819 1.6782 -1.9913 24 1 2.0169 4.0948 -0.5360 25 1 3.6729 3.4820 -0.7603 26 1 3.3065 3.3866 -3.2105 27 1 1.6504 3.9995 -2.9869 28 1 2.9930 6.0480 -5.7367 29 1 1.3277 -1.4903 1.5788 30 1 2.3430 -0.0818 2.0216 31 1 3.1957 -2.5844 0.7758 32 1 4.2110 -1.1758 1.2186 33 1 4.0530 -0.2328 -0.9214 34 1 3.7246 -1.9230 -1.4118 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087230085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = -123.576854 kcal Electronic energy + Delta-G solvation = -16012.270582 eV Core-core repulsion = 13329.509587 eV Total energy + Delta-G solvation = -2682.760996 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75081 -39.29871 -36.69512 -34.86690 -33.35317 -32.77935 -31.38049 -27.09109 -26.98689 -24.52449 -22.89214 -22.33045 -20.91850 -18.79169 -18.43451 -17.29614 -17.04032 -16.56247 -16.47943 -16.11057 -15.40573 -14.73781 -14.69775 -14.30134 -14.27647 -13.44957 -13.32245 -13.26433 -12.95761 -12.73667 -12.55568 -12.51818 -12.27829 -11.95446 -11.85634 -11.71944 -11.51634 -11.35669 -10.62921 -10.46566 -10.09131 -8.25852 -6.37371 1.40767 1.41581 1.46761 1.53162 2.14157 2.41980 2.74521 3.08666 3.56978 3.62054 3.68540 4.05070 4.15830 4.33688 4.42614 4.43281 4.57640 4.63901 4.78283 4.80030 4.82371 4.94364 5.01863 5.11276 5.13740 5.24117 5.42941 5.52765 5.65207 5.75987 6.12493 6.53049 6.75645 7.13503 7.32323 8.86205 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.048537 B = 0.005340 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.743137 B = 5241.991127 C = 5311.670090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.083 3.917 3 C 0.493 3.507 4 O -0.579 6.579 5 N -0.709 5.709 6 C 0.139 3.861 7 C 0.023 3.977 8 C -0.548 4.548 9 H 0.060 0.940 10 C 0.007 3.993 11 N -0.927 5.927 12 Si 0.968 3.032 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.135 4.135 17 C -0.148 4.148 18 C 0.030 3.970 19 O -0.365 6.365 20 H 0.081 0.919 21 H 0.063 0.937 22 H 0.101 0.899 23 H 0.409 0.591 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.266 0.734 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -15.157 8.852 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 C 0.280 3.720 4 O -0.460 6.460 5 N -0.359 5.359 6 C 0.016 3.984 7 C -0.014 4.014 8 C -0.587 4.587 9 H 0.078 0.922 10 C -0.192 4.192 11 N -0.567 5.567 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.173 4.173 17 C -0.186 4.186 18 C -0.046 4.046 19 O -0.283 6.283 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.120 0.880 23 H 0.245 0.755 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.472 -14.790 9.187 17.585 hybrid contribution 0.462 1.069 -0.621 1.320 sum -2.010 -13.721 8.566 16.299 Atomic orbital electron populations 1.21800 0.88571 1.05283 1.03507 1.22677 0.97934 0.86772 0.88581 1.21676 0.77480 0.89668 0.83217 1.90629 1.51069 1.71582 1.32728 1.46205 1.64318 1.15175 1.10230 1.21274 0.97338 0.80850 0.98983 1.19124 0.96332 0.95450 0.90503 1.21452 1.43904 0.99338 0.93965 0.92225 1.25901 0.95301 1.02985 0.94977 1.70070 1.48486 1.39274 0.98831 0.85407 0.78589 0.78727 0.78095 1.19691 1.20416 1.18983 1.22953 0.98764 0.99320 0.96295 1.22959 0.98289 1.02603 0.94749 1.23689 0.83414 1.00371 0.97120 1.89169 1.28178 1.72944 1.38051 0.89967 0.91833 0.88000 0.75522 0.93283 0.93545 0.97585 0.97444 0.92473 0.87070 0.90383 0.87687 0.90436 0.94221 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.83 71.98 0.64 -2.19 16 2 C 0.08 2.18 1.11 -11.04 -0.01 2.17 16 3 C 0.49 17.48 6.13 87.66 0.54 18.01 16 4 O -0.58 -24.18 15.62 -3.00 -0.05 -24.22 16 5 N -0.71 -26.86 5.48 -463.05 -2.54 -29.40 16 6 C 0.14 6.25 5.61 86.38 0.48 6.73 16 7 C 0.02 1.22 5.09 29.85 0.15 1.37 16 8 C -0.55 -31.20 9.11 25.60 0.23 -30.96 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 10 C 0.01 0.41 5.46 84.65 0.46 0.87 16 11 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 12 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 C -0.14 -2.90 6.12 31.61 0.19 -2.71 16 17 C -0.15 -2.75 7.09 31.61 0.22 -2.52 16 18 C 0.03 0.68 7.28 72.49 0.53 1.21 16 19 O -0.36 -9.53 10.62 -148.98 -1.58 -11.11 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.41 14.43 8.09 -92.71 -0.75 13.68 16 24 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.05 2.15 8.14 -2.38 -0.02 2.14 16 26 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.11 1.72 7.87 -2.39 -0.02 1.70 16 30 H 0.08 1.99 6.84 -2.39 -0.02 1.98 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.06 7.93 -2.39 -0.02 1.04 16 34 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -67.11 285.91 1.91 -65.20 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.33 Total: 16.46 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 3.44 Total: -8.02 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.25 Total: -84.29 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.63 Total: -35.33 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.11 1.91 -65.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087230085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.381 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds