Wall clock time and date at job start Mon Mar 30 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.45626 * 2 1 4 4 O 1.20825 * 119.99937 * 25.02611 * 3 2 1 5 5 O 1.34226 * 119.99984 * 205.02851 * 3 2 1 6 6 C 1.53037 * 109.46573 * 119.97096 * 2 1 3 7 7 C 1.53124 * 109.27534 * 60.83415 * 6 2 1 8 8 C 1.53122 * 109.15802 * 57.65790 * 7 6 2 9 9 C 1.53039 * 109.27794 * 302.34275 * 8 7 6 10 10 N 1.46844 * 109.46206 * 240.02862 * 2 1 3 11 11 C 1.46896 * 111.00401 * 65.82433 * 10 2 1 12 12 C 1.50699 * 109.47254 * 170.21628 * 11 10 2 13 13 H 1.07995 * 119.99928 * 354.44952 * 12 11 10 14 14 C 1.37880 * 120.00021 * 174.44486 * 12 11 10 15 15 N 1.31521 * 119.99870 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00187 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47269 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47136 * 300.00538 * 16 14 12 19 19 H 1.48504 * 109.47249 * 60.00068 * 16 14 12 20 20 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47064 * 300.00096 * 1 2 3 22 22 H 1.09001 * 109.47100 * 59.99435 * 1 2 3 23 23 H 0.96708 * 117.00060 * 179.97438 * 5 3 2 24 24 H 1.09000 * 109.50239 * 300.89985 * 6 2 1 25 25 H 1.09000 * 109.50839 * 180.77350 * 6 2 1 26 26 H 1.09002 * 109.52656 * 297.75362 * 7 6 2 27 27 H 1.08995 * 109.52277 * 177.56134 * 7 6 2 28 28 H 1.08999 * 109.50154 * 182.40319 * 8 7 6 29 29 H 1.08998 * 109.50697 * 62.28734 * 8 7 6 30 30 H 1.08994 * 109.46108 * 299.16653 * 9 8 7 31 31 H 1.09000 * 109.45893 * 179.19568 * 9 8 7 32 32 H 1.08992 * 109.47012 * 50.21630 * 11 10 2 33 33 H 1.09000 * 109.46698 * 290.21392 * 11 10 2 34 34 H 0.96996 * 119.99862 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4210 0.0000 4 8 1.3392 2.3064 0.4427 5 8 3.2486 1.7030 -0.4918 6 6 2.0399 -0.7208 1.2500 7 6 1.5442 -2.1695 1.2356 8 6 2.0269 -2.8531 -0.0467 9 6 1.5173 -2.0705 -1.2591 10 7 2.0192 -0.6917 -1.1994 11 6 1.6651 0.0506 -2.4165 12 6 2.3810 -0.5513 -3.5982 13 1 3.1016 -1.3414 -3.4477 14 6 2.1158 -0.0932 -4.8714 15 7 1.2385 0.8693 -5.0545 16 14 3.0026 -0.8398 -6.3361 17 1 2.5434 -0.1771 -7.5832 18 1 4.4664 -0.6429 -6.1815 19 1 2.7035 -2.2926 -6.4080 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 3.5269 2.6289 -0.4707 24 1 1.6637 -0.2163 2.1399 25 1 3.1299 -0.7092 1.2576 26 1 0.4548 -2.1822 1.2672 27 1 1.9409 -2.6988 2.1020 28 1 1.6414 -3.8720 -0.0831 29 1 3.1166 -2.8751 -0.0595 30 1 0.4275 -2.0608 -1.2531 31 1 1.8712 -2.5465 -2.1735 32 1 1.9613 1.0936 -2.3051 33 1 0.5884 -0.0063 -2.5765 34 1 0.7778 1.2567 -4.2939 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127638686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:22 Heat of formation + Delta-G solvation = -120.831122 kcal Electronic energy + Delta-G solvation = -17041.027228 eV Core-core repulsion = 14358.385296 eV Total energy + Delta-G solvation = -2682.641932 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.04976 -39.80318 -37.24004 -35.84721 -33.84080 -33.04823 -29.06276 -27.96256 -25.82577 -25.39222 -23.38811 -22.02213 -19.84130 -19.07768 -18.92096 -18.07436 -16.93254 -16.15158 -15.93821 -15.59055 -15.38966 -15.00103 -14.69461 -14.32106 -13.85306 -13.71035 -13.49775 -13.18265 -13.04668 -12.74726 -12.59514 -12.47332 -12.16125 -12.06690 -11.92964 -11.46530 -11.36170 -11.15119 -10.74912 -10.56686 -9.15181 -8.67740 -6.38113 1.04564 1.53661 1.62305 1.81410 2.07876 2.55478 2.94541 3.15212 3.60495 3.75091 4.00864 4.16004 4.18557 4.28690 4.42600 4.50798 4.54335 4.71077 4.81512 4.85920 4.92751 4.99487 5.06036 5.10473 5.18383 5.30718 5.44958 5.51153 5.76806 5.95972 6.30660 6.38079 6.57281 6.95088 7.42108 8.69902 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.009962 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.637490 B = 2809.966523 C = 3345.305628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 C 0.497 3.503 4 O -0.552 6.552 5 O -0.497 6.497 6 C -0.098 4.098 7 C -0.111 4.111 8 C -0.110 4.110 9 C 0.057 3.943 10 N -0.512 5.512 11 C 0.193 3.807 12 C -0.590 4.590 13 H 0.058 0.942 14 C -0.039 4.039 15 N -0.939 5.939 16 Si 1.121 2.879 17 H -0.287 1.287 18 H -0.270 1.270 19 H -0.266 1.266 20 H 0.093 0.907 21 H 0.081 0.919 22 H 0.028 0.972 23 H 0.416 0.584 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.064 0.936 32 H -0.003 1.003 33 H -0.042 1.042 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -6.499 12.466 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 C 0.341 3.659 4 O -0.443 6.443 5 O -0.307 6.307 6 C -0.135 4.135 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.071 4.071 10 N -0.237 5.237 11 C 0.067 3.933 12 C -0.628 4.628 13 H 0.077 0.923 14 C -0.235 4.235 15 N -0.577 5.577 16 Si 0.942 3.058 17 H -0.212 1.212 18 H -0.195 1.195 19 H -0.191 1.191 20 H 0.111 0.889 21 H 0.100 0.900 22 H 0.047 0.953 23 H 0.276 0.724 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.015 0.985 33 H -0.024 1.024 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.411 -6.617 10.978 13.043 hybrid contribution -1.113 1.374 1.236 2.157 sum 1.298 -5.243 12.213 13.355 Atomic orbital electron populations 1.22335 0.94101 1.03709 1.02250 1.21158 0.94026 0.87247 0.95867 1.23669 0.78682 0.92150 0.71437 1.90632 1.57973 1.49455 1.46207 1.84727 1.34107 1.36796 1.75115 1.21632 1.01914 0.97046 0.92948 1.21612 1.01366 0.93282 0.98552 1.21629 1.01602 0.98816 0.92765 1.22132 0.96702 0.88081 1.00153 1.62165 1.58628 1.02748 1.00168 1.19584 0.91960 0.92970 0.88789 1.22211 1.25517 1.22464 0.92637 0.92344 1.27427 0.96693 0.95320 1.04111 1.70947 1.26679 1.26158 1.33923 0.82887 0.75307 0.75810 0.71822 1.21229 1.19507 1.19083 0.88859 0.89998 0.95309 0.72431 0.89612 0.90495 0.91021 0.88293 0.89196 0.91431 0.95597 0.91702 0.98480 1.02414 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.71 6.99 71.98 0.50 -5.20 16 2 C 0.11 3.90 0.64 2.80 0.00 3.91 16 3 C 0.50 19.50 5.70 71.24 0.41 19.90 16 4 O -0.55 -23.11 16.85 21.97 0.37 -22.74 16 5 O -0.50 -18.41 12.13 -51.38 -0.62 -19.03 16 6 C -0.10 -2.60 4.87 30.65 0.15 -2.45 16 7 C -0.11 -2.38 5.70 30.68 0.17 -2.21 16 8 C -0.11 -2.84 6.09 30.65 0.19 -2.66 16 9 C 0.06 2.07 5.01 86.33 0.43 2.51 16 10 N -0.51 -21.63 4.23 -855.60 -3.62 -25.25 16 11 C 0.19 10.27 3.23 85.56 0.28 10.55 16 12 C -0.59 -33.64 8.31 25.60 0.21 -33.43 16 13 H 0.06 3.28 7.32 -2.91 -0.02 3.25 16 14 C -0.04 -2.25 5.46 84.65 0.46 -1.78 16 15 N -0.94 -59.00 13.65 21.45 0.29 -58.70 16 16 Si 1.12 50.42 29.90 68.60 2.05 52.48 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H 0.09 2.81 4.80 -2.39 -0.01 2.79 16 21 H 0.08 2.53 7.87 -2.39 -0.02 2.51 16 22 H 0.03 1.17 6.77 -2.39 -0.02 1.15 16 23 H 0.42 11.26 9.10 -74.05 -0.67 10.58 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 1.45 6.56 -2.39 -0.02 1.43 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 30 H 0.03 0.94 6.19 -2.39 -0.01 0.93 16 31 H 0.06 2.68 6.80 -2.39 -0.02 2.66 16 32 H 0.00 -0.15 5.93 -2.39 -0.01 -0.17 16 33 H -0.04 -2.40 6.59 -2.39 -0.02 -2.42 16 34 H 0.25 16.07 7.18 -92.71 -0.67 15.40 16 Total: -1.00 -71.75 265.90 1.82 -69.93 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.54 Total: 14.19 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 2.81 Total: -10.87 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -3.33 Total: -83.96 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.25 Total: -41.77 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.48 kcal Total: -71.75 1.82 -69.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127638686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.902 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds