Wall clock time and date at job start Mon Mar 30 2020 03:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99975 * 2 1 4 4 H 1.48501 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47569 * 300.00117 * 3 2 1 6 6 H 1.48500 * 109.46806 * 60.00449 * 3 2 1 7 7 C 1.37880 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99928 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.48566 * 111.00130 * 290.12478 * 10 9 7 12 12 C 1.54374 * 104.59589 * 200.96271 * 11 10 9 13 13 C 1.54263 * 105.06450 * 23.85176 * 12 11 10 14 14 H 1.08995 * 110.32357 * 241.00990 * 13 12 11 15 15 C 1.52997 * 110.32503 * 118.89329 * 13 12 11 16 16 C 1.52996 * 109.46880 * 66.45937 * 15 13 12 17 17 C 1.50706 * 109.47215 * 179.97438 * 16 15 13 18 18 O 1.20825 * 119.99859 * 359.97438 * 17 16 15 19 19 O 1.34224 * 120.00295 * 180.02562 * 17 16 15 20 20 C 1.48557 * 111.00006 * 174.70832 * 10 9 7 21 21 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47021 * 60.00013 * 9 7 2 23 23 H 1.09000 * 109.46733 * 300.00038 * 9 7 2 24 24 H 1.08998 * 110.41217 * 82.18094 * 11 10 9 25 25 H 1.09001 * 110.50941 * 319.79359 * 11 10 9 26 26 H 1.09006 * 110.32485 * 264.95375 * 12 11 10 27 27 H 1.09000 * 110.41186 * 142.79442 * 12 11 10 28 28 H 1.08997 * 109.47186 * 306.45960 * 15 13 12 29 29 H 1.09003 * 109.47116 * 186.45466 * 15 13 12 30 30 H 1.08997 * 109.47192 * 60.00026 * 16 15 13 31 31 H 1.09000 * 109.47459 * 300.00106 * 16 15 13 32 32 H 0.96700 * 117.00196 * 179.97438 * 19 17 16 33 33 H 1.09001 * 110.41196 * 40.26096 * 20 10 9 34 34 H 1.08999 * 110.40932 * 277.81969 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9143 -3.7103 -1.3028 12 6 3.4341 -5.1629 -1.3583 13 6 2.5050 -5.9573 -0.4174 14 1 3.0784 -6.3962 0.3990 15 6 1.7684 -7.0494 -1.1956 16 6 2.7736 -8.0954 -1.6817 17 6 2.0480 -9.1715 -2.4477 18 8 0.8498 -9.1085 -2.5899 19 8 2.7327 -10.2005 -2.9712 20 6 1.5019 -4.9178 0.1274 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.7466 -3.0072 -1.3346 25 1 2.2262 -3.5210 -2.1267 26 1 4.4634 -5.2105 -1.0027 27 1 3.3668 -5.5522 -2.3742 28 1 1.2622 -6.6060 -2.0531 29 1 1.0338 -7.5257 -0.5463 30 1 3.2798 -8.5388 -0.8242 31 1 3.5083 -7.6192 -2.3310 32 1 2.2239 -10.8663 -3.4538 33 1 0.5912 -4.9182 -0.4715 34 1 1.2708 -5.1239 1.1724 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134687206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:48 Heat of formation + Delta-G solvation = -130.461006 kcal Electronic energy + Delta-G solvation = -15560.603611 eV Core-core repulsion = 12877.544096 eV Total energy + Delta-G solvation = -2683.059515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25211 -39.88810 -37.14101 -35.84314 -34.44630 -31.64622 -29.87045 -28.39035 -25.45839 -24.26951 -22.21997 -21.67017 -20.55082 -19.00619 -18.42118 -17.46445 -17.33059 -16.78529 -16.61163 -15.69355 -15.12526 -14.90434 -14.35382 -14.27155 -14.03595 -13.42147 -13.25044 -12.92456 -12.84658 -12.55244 -12.43921 -12.41689 -12.28422 -11.84707 -11.79025 -11.55874 -11.42173 -11.32296 -11.19357 -10.64225 -9.19157 -8.23116 -6.34112 1.26781 1.40025 1.40911 1.55025 2.20377 2.39481 3.09469 3.42803 3.66192 3.84492 4.06789 4.08798 4.28886 4.41904 4.52780 4.70922 4.76461 4.79682 4.84847 4.88565 4.95794 5.08090 5.13569 5.17195 5.32115 5.35147 5.50386 5.63087 5.68385 5.99058 6.25067 6.50918 6.82324 7.04379 7.36282 8.88937 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.065715 B = 0.004564 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.981816 B = 6133.579990 C = 6294.210737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.196 3.804 10 N -0.519 5.519 11 C 0.039 3.961 12 C -0.111 4.111 13 C -0.076 4.076 14 H 0.104 0.896 15 C -0.095 4.095 16 C -0.108 4.108 17 C 0.482 3.518 18 O -0.561 6.561 19 O -0.513 6.513 20 C 0.027 3.973 21 H 0.265 0.735 22 H -0.039 1.039 23 H 0.000 1.000 24 H 0.066 0.934 25 H 0.014 0.986 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.425 0.575 33 H 0.019 0.981 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -18.046 -4.505 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.243 5.243 11 C -0.090 4.090 12 C -0.149 4.149 13 C -0.094 4.094 14 H 0.122 0.878 15 C -0.133 4.133 16 C -0.145 4.145 17 C 0.326 3.674 18 O -0.453 6.453 19 O -0.327 6.327 20 C -0.101 4.101 21 H 0.074 0.926 22 H -0.022 1.022 23 H 0.018 0.982 24 H 0.084 0.916 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.287 0.713 33 H 0.037 0.963 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.930 -17.528 -3.883 20.051 hybrid contribution -1.452 0.650 -0.970 1.863 sum 7.478 -16.878 -4.852 19.087 Atomic orbital electron populations 1.70106 1.07901 1.27939 1.51813 1.25998 0.95792 1.03497 0.94652 0.85262 0.78976 0.78150 0.77792 1.18494 1.20325 1.20245 1.21480 0.93643 0.91021 1.50091 0.91854 1.19531 0.90474 0.89925 0.93197 1.65372 1.25587 1.02093 1.31270 1.22970 0.97666 0.98520 0.89805 1.22467 1.00108 0.92092 1.00197 1.21836 0.95483 0.93760 0.98356 0.87808 1.21392 0.97344 0.94891 0.99686 1.21465 0.99072 0.92166 1.01765 1.23976 0.85743 0.81901 0.75745 1.90739 1.18502 1.77509 1.58514 1.84509 1.46073 1.35243 1.66847 1.23228 0.95873 0.90437 1.00597 0.92636 1.02181 0.98220 0.91556 0.96744 0.89085 0.89610 0.93116 0.91542 0.84702 0.85450 0.71349 0.96256 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.52 -30.80 8.82 25.60 0.23 -30.58 16 8 H 0.06 3.63 7.61 -2.91 -0.02 3.61 16 9 C 0.20 11.01 4.57 85.56 0.39 11.40 16 10 N -0.52 -23.32 5.36 -886.03 -4.75 -28.07 16 11 C 0.04 1.49 5.96 86.45 0.52 2.00 16 12 C -0.11 -2.82 6.14 31.49 0.19 -2.63 16 13 C -0.08 -1.89 3.09 -9.90 -0.03 -1.92 16 14 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 15 C -0.10 -2.10 3.70 30.59 0.11 -1.99 16 16 C -0.11 -1.59 5.63 29.85 0.17 -1.42 16 17 C 0.48 8.98 8.33 71.24 0.59 9.57 16 18 O -0.56 -15.39 16.74 21.97 0.37 -15.02 16 19 O -0.51 -6.57 13.42 -51.35 -0.69 -7.26 16 20 C 0.03 0.98 6.03 86.45 0.52 1.50 16 21 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 22 H -0.04 -2.41 7.89 -2.39 -0.02 -2.43 16 23 H 0.00 -0.02 8.13 -2.39 -0.02 -0.04 16 24 H 0.07 2.63 7.94 -2.39 -0.02 2.61 16 25 H 0.01 0.60 7.83 -2.39 -0.02 0.58 16 26 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.09 1.79 6.84 -2.39 -0.02 1.78 16 28 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 29 H 0.07 1.55 8.10 -2.39 -0.02 1.54 16 30 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.13 1.45 6.93 -2.39 -0.02 1.44 16 32 H 0.43 2.22 9.10 -74.06 -0.67 1.54 16 33 H 0.02 0.76 7.72 -2.39 -0.02 0.74 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -74.71 284.45 0.80 -73.91 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: 0.41 Total: 0.85 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 3.15 Total: -13.71 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -4.47 Total: -85.87 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.32 Total: -22.28 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.71 0.80 -73.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134687206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.553 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds