Wall clock time and date at job start Mon Mar 30 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99906 * 2 1 4 4 C 1.50693 * 109.47275 * 180.02562 * 3 2 1 5 5 N 1.30948 * 125.79316 * 270.24211 * 4 3 2 6 6 N 1.40076 * 108.43982 * 180.17241 * 5 4 3 7 7 C 1.46491 * 126.07285 * 179.88010 * 6 5 4 8 8 C 1.50702 * 109.46957 * 269.68724 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.35997 * 107.84720 * 359.61444 * 6 5 4 17 17 O 1.35932 * 126.25821 * 180.20551 * 16 6 5 18 18 C 1.36206 * 107.48047 * 0.22994 * 16 6 5 19 19 N 1.41295 * 126.09440 * 180.02562 * 18 16 6 20 20 H 1.09003 * 109.47131 * 299.99964 * 1 2 3 21 21 H 1.08996 * 109.47565 * 60.00016 * 1 2 3 22 22 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47255 * 59.99925 * 3 2 1 24 24 H 1.09000 * 109.46933 * 300.00254 * 3 2 1 25 25 H 1.09004 * 109.47166 * 149.68990 * 7 6 5 26 26 H 1.08994 * 109.47507 * 29.68696 * 7 6 5 27 27 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 28 28 H 0.96696 * 114.00375 * 90.00256 * 17 16 6 29 29 H 0.96999 * 119.99446 * 0.02562 * 19 18 16 30 30 H 0.97001 * 120.00130 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2760 1.1215 1.0612 6 7 5.6091 1.0218 0.6429 7 6 6.7822 0.9289 1.5153 8 6 7.2969 2.3134 1.8140 9 1 6.7995 3.1763 1.3962 10 6 8.3990 2.4790 2.6259 11 7 8.8448 3.6875 2.8911 12 14 9.2588 0.9866 3.3491 13 1 10.3222 0.5291 2.4191 14 1 9.8658 1.3496 4.6549 15 1 8.2720 -0.1051 3.5483 16 6 5.6202 1.0206 -0.7171 17 8 6.7195 0.9343 -1.5120 18 6 4.3284 1.1221 -1.1369 19 7 3.8897 1.1558 -2.4796 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 7.5609 0.3516 1.0168 26 1 6.5043 0.4358 2.4467 27 1 9.6203 3.8039 3.4619 28 1 6.9686 0.0287 -1.7418 29 1 4.5350 1.1041 -3.2020 30 1 2.9434 1.2307 -2.6789 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169090658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:36 Heat of formation + Delta-G solvation = -1.474103 kcal Electronic energy + Delta-G solvation = -15615.078421 eV Core-core repulsion = 12834.071855 eV Total energy + Delta-G solvation = -2781.006567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64856 -37.69709 -36.48750 -34.36422 -32.94724 -31.46976 -29.15043 -27.31912 -26.42076 -25.23164 -22.24437 -20.55272 -19.66453 -17.71022 -17.03755 -16.40703 -16.31260 -15.54608 -15.41732 -15.01544 -14.67716 -13.99570 -13.91493 -13.00062 -12.62106 -12.42498 -12.17690 -11.95556 -11.40884 -11.35074 -11.07337 -10.77755 -10.49636 -9.95091 -9.84268 -9.58314 -9.56076 -8.72943 -8.37035 -6.61521 -6.20529 -4.22747 2.40775 3.06565 3.10909 3.19777 3.26308 3.29627 4.15314 4.26356 4.49161 4.67018 5.06170 5.15844 5.19344 5.33839 5.42522 5.54887 5.61797 5.80858 6.21153 6.48848 6.59804 6.96088 7.20682 7.29421 7.37376 7.88067 8.20749 8.24438 8.37648 8.50682 8.85134 9.34369 10.92330 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.035418 B = 0.007011 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.365736 B = 3992.780863 C = 4367.592562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.155 3.845 4 C 0.010 3.990 5 N -0.237 5.237 6 N -0.321 5.321 7 C 0.235 3.765 8 C -0.536 4.536 9 H 0.081 0.919 10 C 0.078 3.922 11 N -0.888 5.888 12 Si 0.874 3.126 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.263 1.263 16 C 0.182 3.818 17 O -0.453 6.453 18 C 0.049 3.951 19 N -0.873 5.873 20 H 0.041 0.959 21 H 0.039 0.961 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.268 0.732 28 H 0.377 0.623 29 H 0.393 0.607 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 -7.894 -8.565 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.077 3.923 4 C -0.155 4.155 5 N -0.069 5.069 6 N -0.116 5.116 7 C 0.115 3.885 8 C -0.575 4.575 9 H 0.099 0.901 10 C -0.126 4.126 11 N -0.525 5.525 12 Si 0.700 3.300 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.188 1.188 16 C 0.009 3.991 17 O -0.254 6.254 18 C -0.060 4.060 19 N -0.422 5.422 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.230 0.770 29 H 0.220 0.780 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.234 -7.358 -7.056 15.169 hybrid contribution 0.501 -0.839 -0.830 1.283 sum -10.732 -8.197 -7.886 15.638 Atomic orbital electron populations 1.22717 0.81399 1.02538 0.99869 1.87996 1.19115 1.27833 1.95368 1.20384 0.86431 0.84603 1.00845 1.20998 0.94564 1.10141 0.89768 1.77299 0.86654 1.21429 1.21472 1.49105 1.05603 1.53080 1.03837 1.19964 0.79418 0.99638 0.89432 1.21164 1.13740 0.91045 1.31536 0.90121 1.24803 0.96311 0.96068 0.95403 1.69874 1.24681 1.21111 1.36869 0.86886 0.80463 0.83237 0.79412 1.19718 1.20500 1.18800 1.17786 0.86034 1.12754 0.82492 1.85038 1.44128 1.31434 1.64803 1.17039 0.90224 1.12350 0.86409 1.41376 1.08894 1.90121 1.01770 0.94037 0.94230 0.89835 0.91716 0.92094 0.93921 0.93003 0.92181 0.76993 0.77972 0.78126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.72 10.69 -35.23 -0.38 -6.10 16 3 C 0.16 2.33 6.34 36.00 0.23 2.56 16 4 C 0.01 0.19 6.85 -82.30 -0.56 -0.37 16 5 N -0.24 -5.43 12.57 33.72 0.42 -5.00 16 6 N -0.32 -7.58 3.63 -62.33 -0.23 -7.81 16 7 C 0.23 5.83 5.23 -5.20 -0.03 5.80 16 8 C -0.54 -15.64 9.94 -34.44 -0.34 -15.98 16 9 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16 10 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 11 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 12 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 16 C 0.18 3.83 8.04 -16.44 -0.13 3.69 16 17 O -0.45 -8.39 13.60 -19.53 -0.27 -8.66 16 18 C 0.05 0.93 7.24 -83.54 -0.61 0.32 16 19 N -0.87 -12.20 9.22 32.45 0.30 -11.90 16 20 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.74 7.69 -51.93 -0.40 0.34 16 25 H 0.04 0.99 7.58 -51.93 -0.39 0.59 16 26 H 0.05 1.28 7.19 -51.93 -0.37 0.90 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 28 H 0.38 4.84 9.06 45.56 0.41 5.26 16 29 H 0.39 4.86 8.96 -40.82 -0.37 4.50 16 30 H 0.39 4.57 8.35 -40.82 -0.34 4.22 16 LS Contribution 269.76 15.07 4.07 4.07 Total: -1.00 -34.64 269.76 -3.14 -37.78 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.74 Total: 8.39 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.43 Total: -0.41 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 1.27 Total: -51.06 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.64 Total: -14.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.64 -3.14 -37.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169090658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.304 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds