Wall clock time and date at job start Mon Mar 30 2020 02:44:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42903 * 113.99906 * 2 1
4 4 C 1.50693 * 109.47275 * 180.02562 * 3 2 1
5 5 N 1.30948 * 125.79316 * 270.24211 * 4 3 2
6 6 N 1.40076 * 108.43982 * 180.17241 * 5 4 3
7 7 C 1.46491 * 126.07285 * 179.88010 * 6 5 4
8 8 C 1.50702 * 109.46957 * 269.68724 * 7 6 5
9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6
10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6
11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7
12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7
13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8
14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8
15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8
16 16 C 1.35997 * 107.84720 * 359.61444 * 6 5 4
17 17 O 1.35932 * 126.25821 * 180.20551 * 16 6 5
18 18 C 1.36206 * 107.48047 * 0.22994 * 16 6 5
19 19 N 1.41295 * 126.09440 * 180.02562 * 18 16 6
20 20 H 1.09003 * 109.47131 * 299.99964 * 1 2 3
21 21 H 1.08996 * 109.47565 * 60.00016 * 1 2 3
22 22 H 1.08997 * 109.47204 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47255 * 59.99925 * 3 2 1
24 24 H 1.09000 * 109.46933 * 300.00254 * 3 2 1
25 25 H 1.09004 * 109.47166 * 149.68990 * 7 6 5
26 26 H 1.08994 * 109.47507 * 29.68696 * 7 6 5
27 27 H 0.96996 * 119.99730 * 180.02562 * 11 10 8
28 28 H 0.96696 * 114.00375 * 90.00256 * 17 16 6
29 29 H 0.96999 * 119.99446 * 0.02562 * 19 18 16
30 30 H 0.97001 * 120.00130 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5124 1.1866 -0.0006
5 7 4.2760 1.1215 1.0612
6 7 5.6091 1.0218 0.6429
7 6 6.7822 0.9289 1.5153
8 6 7.2969 2.3134 1.8140
9 1 6.7995 3.1763 1.3962
10 6 8.3990 2.4790 2.6259
11 7 8.8448 3.6875 2.8911
12 14 9.2588 0.9866 3.3491
13 1 10.3222 0.5291 2.4191
14 1 9.8658 1.3496 4.6549
15 1 8.2720 -0.1051 3.5483
16 6 5.6202 1.0206 -0.7171
17 8 6.7195 0.9343 -1.5120
18 6 4.3284 1.1221 -1.1369
19 7 3.8897 1.1558 -2.4796
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5138 -0.8899
22 1 -0.3633 -1.0276 0.0005
23 1 1.6885 1.8464 0.8900
24 1 1.6885 1.8464 -0.8900
25 1 7.5609 0.3516 1.0168
26 1 6.5043 0.4358 2.4467
27 1 9.6203 3.8039 3.4619
28 1 6.9686 0.0287 -1.7418
29 1 4.5350 1.1041 -3.2020
30 1 2.9434 1.2307 -2.6789
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000169090658.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:36
Heat of formation + Delta-G solvation = -1.474103 kcal
Electronic energy + Delta-G solvation = -15615.078421 eV
Core-core repulsion = 12834.071855 eV
Total energy + Delta-G solvation = -2781.006567 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.106 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.64856 -37.69709 -36.48750 -34.36422 -32.94724 -31.46976 -29.15043 -27.31912
-26.42076 -25.23164 -22.24437 -20.55272 -19.66453 -17.71022 -17.03755 -16.40703
-16.31260 -15.54608 -15.41732 -15.01544 -14.67716 -13.99570 -13.91493 -13.00062
-12.62106 -12.42498 -12.17690 -11.95556 -11.40884 -11.35074 -11.07337 -10.77755
-10.49636 -9.95091 -9.84268 -9.58314 -9.56076 -8.72943 -8.37035 -6.61521
-6.20529 -4.22747 2.40775 3.06565 3.10909 3.19777 3.26308 3.29627
4.15314 4.26356 4.49161 4.67018 5.06170 5.15844 5.19344 5.33839
5.42522 5.54887 5.61797 5.80858 6.21153 6.48848 6.59804 6.96088
7.20682 7.29421 7.37376 7.88067 8.20749 8.24438 8.37648 8.50682
8.85134 9.34369 10.92330
Molecular weight = 227.11amu
Principal moments of inertia in cm(-1)
A = 0.035418 B = 0.007011 C = 0.006409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.365736 B = 3992.780863 C = 4367.592562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.385 6.385
3 C 0.155 3.845
4 C 0.010 3.990
5 N -0.237 5.237
6 N -0.321 5.321
7 C 0.235 3.765
8 C -0.536 4.536
9 H 0.081 0.919
10 C 0.078 3.922
11 N -0.888 5.888
12 Si 0.874 3.126
13 H -0.272 1.272
14 H -0.280 1.280
15 H -0.263 1.263
16 C 0.182 3.818
17 O -0.453 6.453
18 C 0.049 3.951
19 N -0.873 5.873
20 H 0.041 0.959
21 H 0.039 0.961
22 H 0.083 0.917
23 H 0.065 0.935
24 H 0.061 0.939
25 H 0.043 0.957
26 H 0.052 0.948
27 H 0.268 0.732
28 H 0.377 0.623
29 H 0.393 0.607
30 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.726 -7.894 -8.565 16.528
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.303 6.303
3 C 0.077 3.923
4 C -0.155 4.155
5 N -0.069 5.069
6 N -0.116 5.116
7 C 0.115 3.885
8 C -0.575 4.575
9 H 0.099 0.901
10 C -0.126 4.126
11 N -0.525 5.525
12 Si 0.700 3.300
13 H -0.197 1.197
14 H -0.205 1.205
15 H -0.188 1.188
16 C 0.009 3.991
17 O -0.254 6.254
18 C -0.060 4.060
19 N -0.422 5.422
20 H 0.060 0.940
21 H 0.058 0.942
22 H 0.102 0.898
23 H 0.083 0.917
24 H 0.079 0.921
25 H 0.061 0.939
26 H 0.070 0.930
27 H 0.078 0.922
28 H 0.230 0.770
29 H 0.220 0.780
30 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges -11.234 -7.358 -7.056 15.169
hybrid contribution 0.501 -0.839 -0.830 1.283
sum -10.732 -8.197 -7.886 15.638
Atomic orbital electron populations
1.22717 0.81399 1.02538 0.99869 1.87996 1.19115 1.27833 1.95368
1.20384 0.86431 0.84603 1.00845 1.20998 0.94564 1.10141 0.89768
1.77299 0.86654 1.21429 1.21472 1.49105 1.05603 1.53080 1.03837
1.19964 0.79418 0.99638 0.89432 1.21164 1.13740 0.91045 1.31536
0.90121 1.24803 0.96311 0.96068 0.95403 1.69874 1.24681 1.21111
1.36869 0.86886 0.80463 0.83237 0.79412 1.19718 1.20500 1.18800
1.17786 0.86034 1.12754 0.82492 1.85038 1.44128 1.31434 1.64803
1.17039 0.90224 1.12350 0.86409 1.41376 1.08894 1.90121 1.01770
0.94037 0.94230 0.89835 0.91716 0.92094 0.93921 0.93003 0.92181
0.76993 0.77972 0.78126
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.31 11.01 101.05 1.11 1.43 16
2 O -0.39 -5.72 10.69 -35.23 -0.38 -6.10 16
3 C 0.16 2.33 6.34 36.00 0.23 2.56 16
4 C 0.01 0.19 6.85 -82.30 -0.56 -0.37 16
5 N -0.24 -5.43 12.57 33.72 0.42 -5.00 16
6 N -0.32 -7.58 3.63 -62.33 -0.23 -7.81 16
7 C 0.23 5.83 5.23 -5.20 -0.03 5.80 16
8 C -0.54 -15.64 9.94 -34.44 -0.34 -15.98 16
9 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16
10 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16
11 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16
12 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16
13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
15 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16
16 C 0.18 3.83 8.04 -16.44 -0.13 3.69 16
17 O -0.45 -8.39 13.60 -19.53 -0.27 -8.66 16
18 C 0.05 0.93 7.24 -83.54 -0.61 0.32 16
19 N -0.87 -12.20 9.22 32.45 0.30 -11.90 16
20 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16
21 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16
22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
24 H 0.06 0.74 7.69 -51.93 -0.40 0.34 16
25 H 0.04 0.99 7.58 -51.93 -0.39 0.59 16
26 H 0.05 1.28 7.19 -51.93 -0.37 0.90 16
27 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16
28 H 0.38 4.84 9.06 45.56 0.41 5.26 16
29 H 0.39 4.86 8.96 -40.82 -0.37 4.50 16
30 H 0.39 4.57 8.35 -40.82 -0.34 4.22 16
LS Contribution 269.76 15.07 4.07 4.07
Total: -1.00 -34.64 269.76 -3.14 -37.78
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: -2.74 Total: 8.39 kcal
Atomic # 6 Polarization: 0.02 SS G_CDS: -0.43 Total: -0.41 kcal
Atomic # 7 Polarization: -52.33 SS G_CDS: 1.27 Total: -51.06 kcal
Atomic # 8 Polarization: -14.11 SS G_CDS: -0.64 Total: -14.75 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -34.64 -3.14 -37.78 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000169090658.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.304 kcal
(2) G-P(sol) polarization free energy of solvation -34.636 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds