Wall clock time and date at job start Mon Mar 30 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99906 * 2 1 4 4 C 1.50693 * 109.47275 * 180.02562 * 3 2 1 5 5 N 1.30948 * 125.79316 * 270.24211 * 4 3 2 6 6 N 1.40076 * 108.43982 * 180.17241 * 5 4 3 7 7 C 1.46491 * 126.07285 * 179.88010 * 6 5 4 8 8 C 1.50702 * 109.46957 * 269.68724 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.35997 * 107.84720 * 359.61444 * 6 5 4 17 17 O 1.35932 * 126.25821 * 180.20551 * 16 6 5 18 18 C 1.36206 * 107.48047 * 0.22994 * 16 6 5 19 19 N 1.41295 * 126.09440 * 180.02562 * 18 16 6 20 20 H 1.09003 * 109.47131 * 299.99964 * 1 2 3 21 21 H 1.08996 * 109.47565 * 60.00016 * 1 2 3 22 22 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47255 * 59.99925 * 3 2 1 24 24 H 1.09000 * 109.46933 * 300.00254 * 3 2 1 25 25 H 1.09004 * 109.47166 * 149.68990 * 7 6 5 26 26 H 1.08994 * 109.47507 * 29.68696 * 7 6 5 27 27 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 28 28 H 0.96696 * 114.00375 * 90.00256 * 17 16 6 29 29 H 0.96999 * 119.99446 * 0.02562 * 19 18 16 30 30 H 0.97001 * 120.00130 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2760 1.1215 1.0612 6 7 5.6091 1.0218 0.6429 7 6 6.7822 0.9289 1.5153 8 6 7.2969 2.3134 1.8140 9 1 6.7995 3.1763 1.3962 10 6 8.3990 2.4790 2.6259 11 7 8.8448 3.6875 2.8911 12 14 9.2588 0.9866 3.3491 13 1 10.3222 0.5291 2.4191 14 1 9.8658 1.3496 4.6549 15 1 8.2720 -0.1051 3.5483 16 6 5.6202 1.0206 -0.7171 17 8 6.7195 0.9343 -1.5120 18 6 4.3284 1.1221 -1.1369 19 7 3.8897 1.1558 -2.4796 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 7.5609 0.3516 1.0168 26 1 6.5043 0.4358 2.4467 27 1 9.6203 3.8039 3.4619 28 1 6.9686 0.0287 -1.7418 29 1 4.5350 1.1041 -3.2020 30 1 2.9434 1.2307 -2.6789 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169090658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:36 Heat of formation + Delta-G solvation = -33.123728 kcal Electronic energy + Delta-G solvation = -15616.450852 eV Core-core repulsion = 12834.071855 eV Total energy + Delta-G solvation = -2782.378997 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.18901 -38.79663 -37.92052 -36.02628 -34.77866 -33.16088 -30.72623 -28.69677 -27.87903 -26.46038 -24.07348 -22.13931 -21.13828 -19.33563 -19.07018 -17.83926 -17.38371 -16.84776 -16.67248 -16.35978 -16.24227 -15.62619 -15.35995 -14.63023 -14.45436 -14.04317 -13.43377 -13.22327 -13.13714 -12.70292 -12.57870 -12.33496 -12.13598 -11.83852 -11.41608 -11.32688 -10.89604 -10.61003 -10.04958 -8.41010 -8.01851 -6.51577 0.83807 1.33121 1.35785 1.46074 1.57150 1.69766 2.26727 2.88605 2.96347 3.23465 3.39586 3.78707 4.09249 4.34932 4.39116 4.50047 4.59755 4.63368 4.64976 4.92308 5.05303 5.22808 5.48980 5.75894 6.15877 6.23685 6.49600 6.62108 6.78834 6.92975 7.12097 7.29297 8.76514 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.035418 B = 0.007011 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.365736 B = 3992.780863 C = 4367.592562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.158 3.842 4 C 0.013 3.987 5 N -0.281 5.281 6 N -0.352 5.352 7 C 0.245 3.755 8 C -0.552 4.552 9 H 0.020 0.980 10 C 0.018 3.982 11 N -0.940 5.940 12 Si 0.956 3.044 13 H -0.254 1.254 14 H -0.275 1.275 15 H -0.242 1.242 16 C 0.163 3.837 17 O -0.462 6.462 18 C 0.056 3.944 19 N -0.854 5.854 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.274 0.726 28 H 0.401 0.599 29 H 0.403 0.597 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.538 -9.878 -9.507 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.080 3.920 4 C -0.153 4.153 5 N -0.112 5.112 6 N -0.148 5.148 7 C 0.125 3.875 8 C -0.590 4.590 9 H 0.038 0.962 10 C -0.181 4.181 11 N -0.578 5.578 12 Si 0.777 3.223 13 H -0.178 1.178 14 H -0.200 1.200 15 H -0.166 1.166 16 C -0.009 4.009 17 O -0.266 6.266 18 C -0.055 4.055 19 N -0.405 5.405 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.116 0.884 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.258 0.742 29 H 0.232 0.768 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.086 -9.359 -8.059 17.280 hybrid contribution 0.603 -0.140 -0.662 0.907 sum -11.483 -9.499 -8.721 17.267 Atomic orbital electron populations 1.22986 0.78776 1.04016 1.01362 1.87938 1.21904 1.27444 1.95653 1.20498 0.83684 0.85308 1.02523 1.21814 0.96654 1.07626 0.89213 1.77206 0.86953 1.23415 1.23581 1.48942 1.05449 1.55732 1.04660 1.19667 0.80674 0.96870 0.90314 1.21292 1.14111 0.91628 1.31955 0.96166 1.25902 0.96845 1.00016 0.95380 1.70042 1.25627 1.24231 1.37949 0.85606 0.79505 0.78659 0.78569 1.17789 1.20009 1.16554 1.18113 0.87347 1.13486 0.81987 1.84968 1.43627 1.33830 1.64141 1.17154 0.89374 1.10833 0.88130 1.41306 1.10083 1.89049 1.00022 0.93327 0.91920 0.88446 0.91564 0.88860 0.91786 0.92869 0.91717 0.74195 0.76759 0.76410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -11.29 10.69 -148.98 -1.59 -12.89 16 3 C 0.16 4.43 6.34 71.23 0.45 4.88 16 4 C 0.01 0.50 6.85 43.12 0.30 0.79 16 5 N -0.28 -13.06 12.57 -47.23 -0.59 -13.65 16 6 N -0.35 -16.86 3.63 -461.87 -1.67 -18.53 16 7 C 0.24 12.26 5.23 85.64 0.45 12.71 16 8 C -0.55 -33.39 9.94 25.60 0.25 -33.13 16 9 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 10 C 0.02 1.04 5.47 84.66 0.46 1.50 16 11 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 12 Si 0.96 42.38 27.47 68.60 1.88 44.27 16 13 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 16 C 0.16 6.79 8.04 83.57 0.67 7.46 16 17 O -0.46 -16.70 13.60 -92.78 -1.26 -17.96 16 18 C 0.06 2.02 7.24 37.58 0.27 2.29 16 19 N -0.85 -21.67 9.22 -51.24 -0.47 -22.15 16 20 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 21 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.09 1.97 7.69 -2.39 -0.02 1.95 16 25 H 0.06 2.89 7.58 -2.38 -0.02 2.87 16 26 H 0.05 2.60 7.19 -2.39 -0.02 2.59 16 27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.40 9.66 9.06 -74.06 -0.67 8.99 16 29 H 0.40 8.90 8.96 -92.71 -0.83 8.07 16 30 H 0.41 8.11 8.35 -92.71 -0.77 7.33 16 Total: -1.00 -78.54 269.76 -0.44 -78.98 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -1.14 Total: 22.68 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 4.10 Total: -1.84 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -2.44 Total: -113.25 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.85 Total: -30.85 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal Total: -78.54 -0.44 -78.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169090658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.861 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds