Wall clock time and date at job start Mon Mar 30 2020 02:44:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42903 * 113.99906 * 2 1
4 4 C 1.50693 * 109.47275 * 180.02562 * 3 2 1
5 5 N 1.30948 * 125.79316 * 270.24211 * 4 3 2
6 6 N 1.40076 * 108.43982 * 180.17241 * 5 4 3
7 7 C 1.46491 * 126.07285 * 179.88010 * 6 5 4
8 8 C 1.50702 * 109.46957 * 269.68724 * 7 6 5
9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6
10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6
11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7
12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7
13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8
14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8
15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8
16 16 C 1.35997 * 107.84720 * 359.61444 * 6 5 4
17 17 O 1.35932 * 126.25821 * 180.20551 * 16 6 5
18 18 C 1.36206 * 107.48047 * 0.22994 * 16 6 5
19 19 N 1.41295 * 126.09440 * 180.02562 * 18 16 6
20 20 H 1.09003 * 109.47131 * 299.99964 * 1 2 3
21 21 H 1.08996 * 109.47565 * 60.00016 * 1 2 3
22 22 H 1.08997 * 109.47204 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47255 * 59.99925 * 3 2 1
24 24 H 1.09000 * 109.46933 * 300.00254 * 3 2 1
25 25 H 1.09004 * 109.47166 * 149.68990 * 7 6 5
26 26 H 1.08994 * 109.47507 * 29.68696 * 7 6 5
27 27 H 0.96996 * 119.99730 * 180.02562 * 11 10 8
28 28 H 0.96696 * 114.00375 * 90.00256 * 17 16 6
29 29 H 0.96999 * 119.99446 * 0.02562 * 19 18 16
30 30 H 0.97001 * 120.00130 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5124 1.1866 -0.0006
5 7 4.2760 1.1215 1.0612
6 7 5.6091 1.0218 0.6429
7 6 6.7822 0.9289 1.5153
8 6 7.2969 2.3134 1.8140
9 1 6.7995 3.1763 1.3962
10 6 8.3990 2.4790 2.6259
11 7 8.8448 3.6875 2.8911
12 14 9.2588 0.9866 3.3491
13 1 10.3222 0.5291 2.4191
14 1 9.8658 1.3496 4.6549
15 1 8.2720 -0.1051 3.5483
16 6 5.6202 1.0206 -0.7171
17 8 6.7195 0.9343 -1.5120
18 6 4.3284 1.1221 -1.1369
19 7 3.8897 1.1558 -2.4796
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5138 -0.8899
22 1 -0.3633 -1.0276 0.0005
23 1 1.6885 1.8464 0.8900
24 1 1.6885 1.8464 -0.8900
25 1 7.5609 0.3516 1.0168
26 1 6.5043 0.4358 2.4467
27 1 9.6203 3.8039 3.4619
28 1 6.9686 0.0287 -1.7418
29 1 4.5350 1.1041 -3.2020
30 1 2.9434 1.2307 -2.6789
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000169090658.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:36
Heat of formation + Delta-G solvation = -33.123728 kcal
Electronic energy + Delta-G solvation = -15616.450852 eV
Core-core repulsion = 12834.071855 eV
Total energy + Delta-G solvation = -2782.378997 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.106 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.18901 -38.79663 -37.92052 -36.02628 -34.77866 -33.16088 -30.72623 -28.69677
-27.87903 -26.46038 -24.07348 -22.13931 -21.13828 -19.33563 -19.07018 -17.83926
-17.38371 -16.84776 -16.67248 -16.35978 -16.24227 -15.62619 -15.35995 -14.63023
-14.45436 -14.04317 -13.43377 -13.22327 -13.13714 -12.70292 -12.57870 -12.33496
-12.13598 -11.83852 -11.41608 -11.32688 -10.89604 -10.61003 -10.04958 -8.41010
-8.01851 -6.51577 0.83807 1.33121 1.35785 1.46074 1.57150 1.69766
2.26727 2.88605 2.96347 3.23465 3.39586 3.78707 4.09249 4.34932
4.39116 4.50047 4.59755 4.63368 4.64976 4.92308 5.05303 5.22808
5.48980 5.75894 6.15877 6.23685 6.49600 6.62108 6.78834 6.92975
7.12097 7.29297 8.76514
Molecular weight = 227.11amu
Principal moments of inertia in cm(-1)
A = 0.035418 B = 0.007011 C = 0.006409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.365736 B = 3992.780863 C = 4367.592562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.411 6.411
3 C 0.158 3.842
4 C 0.013 3.987
5 N -0.281 5.281
6 N -0.352 5.352
7 C 0.245 3.755
8 C -0.552 4.552
9 H 0.020 0.980
10 C 0.018 3.982
11 N -0.940 5.940
12 Si 0.956 3.044
13 H -0.254 1.254
14 H -0.275 1.275
15 H -0.242 1.242
16 C 0.163 3.837
17 O -0.462 6.462
18 C 0.056 3.944
19 N -0.854 5.854
20 H 0.048 0.952
21 H 0.062 0.938
22 H 0.097 0.903
23 H 0.066 0.934
24 H 0.094 0.906
25 H 0.064 0.936
26 H 0.053 0.947
27 H 0.274 0.726
28 H 0.401 0.599
29 H 0.403 0.597
30 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.538 -9.878 -9.507 18.578
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.329 6.329
3 C 0.080 3.920
4 C -0.153 4.153
5 N -0.112 5.112
6 N -0.148 5.148
7 C 0.125 3.875
8 C -0.590 4.590
9 H 0.038 0.962
10 C -0.181 4.181
11 N -0.578 5.578
12 Si 0.777 3.223
13 H -0.178 1.178
14 H -0.200 1.200
15 H -0.166 1.166
16 C -0.009 4.009
17 O -0.266 6.266
18 C -0.055 4.055
19 N -0.405 5.405
20 H 0.067 0.933
21 H 0.081 0.919
22 H 0.116 0.884
23 H 0.084 0.916
24 H 0.111 0.889
25 H 0.082 0.918
26 H 0.071 0.929
27 H 0.083 0.917
28 H 0.258 0.742
29 H 0.232 0.768
30 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges -12.086 -9.359 -8.059 17.280
hybrid contribution 0.603 -0.140 -0.662 0.907
sum -11.483 -9.499 -8.721 17.267
Atomic orbital electron populations
1.22986 0.78776 1.04016 1.01362 1.87938 1.21904 1.27444 1.95653
1.20498 0.83684 0.85308 1.02523 1.21814 0.96654 1.07626 0.89213
1.77206 0.86953 1.23415 1.23581 1.48942 1.05449 1.55732 1.04660
1.19667 0.80674 0.96870 0.90314 1.21292 1.14111 0.91628 1.31955
0.96166 1.25902 0.96845 1.00016 0.95380 1.70042 1.25627 1.24231
1.37949 0.85606 0.79505 0.78659 0.78569 1.17789 1.20009 1.16554
1.18113 0.87347 1.13486 0.81987 1.84968 1.43627 1.33830 1.64141
1.17154 0.89374 1.10833 0.88130 1.41306 1.10083 1.89049 1.00022
0.93327 0.91920 0.88446 0.91564 0.88860 0.91786 0.92869 0.91717
0.74195 0.76759 0.76410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.41 11.01 113.37 1.25 1.66 16
2 O -0.41 -11.29 10.69 -148.98 -1.59 -12.89 16
3 C 0.16 4.43 6.34 71.23 0.45 4.88 16
4 C 0.01 0.50 6.85 43.12 0.30 0.79 16
5 N -0.28 -13.06 12.57 -47.23 -0.59 -13.65 16
6 N -0.35 -16.86 3.63 -461.87 -1.67 -18.53 16
7 C 0.24 12.26 5.23 85.64 0.45 12.71 16
8 C -0.55 -33.39 9.94 25.60 0.25 -33.13 16
9 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16
10 C 0.02 1.04 5.47 84.66 0.46 1.50 16
11 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16
12 Si 0.96 42.38 27.47 68.60 1.88 44.27 16
13 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16
14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
15 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16
16 C 0.16 6.79 8.04 83.57 0.67 7.46 16
17 O -0.46 -16.70 13.60 -92.78 -1.26 -17.96 16
18 C 0.06 2.02 7.24 37.58 0.27 2.29 16
19 N -0.85 -21.67 9.22 -51.24 -0.47 -22.15 16
20 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16
21 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
22 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
24 H 0.09 1.97 7.69 -2.39 -0.02 1.95 16
25 H 0.06 2.89 7.58 -2.38 -0.02 2.87 16
26 H 0.05 2.60 7.19 -2.39 -0.02 2.59 16
27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16
28 H 0.40 9.66 9.06 -74.06 -0.67 8.99 16
29 H 0.40 8.90 8.96 -92.71 -0.83 8.07 16
30 H 0.41 8.11 8.35 -92.71 -0.77 7.33 16
Total: -1.00 -78.54 269.76 -0.44 -78.98
By element:
Atomic # 1 Polarization: 23.82 SS G_CDS: -1.14 Total: 22.68 kcal
Atomic # 6 Polarization: -5.94 SS G_CDS: 4.10 Total: -1.84 kcal
Atomic # 7 Polarization: -110.81 SS G_CDS: -2.44 Total: -113.25 kcal
Atomic # 8 Polarization: -28.00 SS G_CDS: -2.85 Total: -30.85 kcal
Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal
Total: -78.54 -0.44 -78.98 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000169090658.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.861 kcal
(2) G-P(sol) polarization free energy of solvation -78.541 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.985 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds