Wall clock time and date at job start Mon Mar 30 2020 03:26:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52994 * 109.52442 * 2 1
4 4 C 1.53070 * 109.62237 * 239.96514 * 2 1 3
5 5 C 1.53036 * 109.65687 * 178.82934 * 4 2 1
6 6 C 1.53202 * 109.31211 * 61.30541 * 5 4 2
7 7 N 1.46918 * 108.77309 * 305.36527 * 6 5 4
8 8 C 1.36939 * 120.63024 * 233.62751 * 7 6 5
9 9 H 1.07993 * 120.00250 * 216.03865 * 8 7 6
10 10 C 1.38815 * 119.99945 * 36.04327 * 8 7 6
11 11 N 1.31621 * 119.99987 * 16.61641 * 10 8 7
12 12 Si 1.86801 * 119.99922 * 196.61960 * 10 8 7
13 13 H 1.48497 * 109.47172 * 59.99673 * 12 10 8
14 14 H 1.48506 * 109.46846 * 179.97438 * 12 10 8
15 15 H 1.48503 * 109.46844 * 299.99376 * 12 10 8
16 16 C 1.46928 * 118.74308 * 53.60667 * 7 6 5
17 17 H 1.08993 * 109.58485 * 66.31946 * 16 7 6
18 18 C 1.50699 * 109.59067 * 186.60409 * 16 7 6
19 19 O 1.20832 * 119.99540 * 37.32417 * 18 16 7
20 20 O 1.34221 * 120.00263 * 217.05250 * 18 16 7
21 21 H 1.09003 * 109.47559 * 299.92512 * 1 2 3
22 22 H 1.08998 * 109.47003 * 59.92501 * 1 2 3
23 23 H 1.08996 * 109.47114 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.47070 * 180.02562 * 3 2 1
25 25 H 1.09005 * 109.47093 * 300.07512 * 3 2 1
26 26 H 1.08997 * 109.47876 * 60.07563 * 3 2 1
27 27 H 1.09008 * 109.45249 * 58.74540 * 4 2 1
28 28 H 1.08997 * 109.34323 * 298.85307 * 4 2 1
29 29 H 1.08996 * 109.50313 * 301.35501 * 5 4 2
30 30 H 1.09007 * 109.49983 * 181.25452 * 5 4 2
31 31 H 1.08997 * 109.58400 * 185.57467 * 6 5 4
32 32 H 1.08994 * 109.70055 * 65.21907 * 6 5 4
33 33 H 0.97000 * 120.00106 * 180.02562 * 11 10 8
34 34 H 0.96696 * 117.00432 * 180.27213 * 20 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0413 1.4420 0.0000
4 6 2.0441 -0.7217 -1.2482
5 6 3.5741 -0.6967 -1.2638
6 6 4.1055 -1.4302 -0.0282
7 7 3.5044 -0.8321 1.1716
8 6 4.2929 -0.3837 2.1974
9 1 3.9625 -0.4923 3.2198
10 6 5.5171 0.2107 1.9232
11 7 5.7822 0.6409 0.7078
12 14 6.7881 0.3998 3.2789
13 1 7.1502 -0.9395 3.8084
14 1 8.0008 1.0598 2.7319
15 1 6.2240 1.2292 4.3740
16 6 2.0412 -0.7238 1.2497
17 1 1.6032 -1.7206 1.2996
18 6 1.6574 0.0587 2.4792
19 8 2.3297 0.9990 2.8310
20 8 0.5658 -0.2855 3.1802
21 1 -0.3634 0.5127 0.8907
22 1 -0.3633 0.5150 -0.8893
23 1 -0.3633 -1.0276 -0.0005
24 1 3.1313 1.4409 -0.0005
25 1 1.6774 1.9565 -0.8893
26 1 1.6797 1.9558 0.8906
27 1 1.6636 -0.2218 -2.1391
28 1 1.6978 -1.7551 -1.2360
29 1 3.9214 0.3364 -1.2508
30 1 3.9369 -1.1916 -2.1647
31 1 5.1899 -1.3304 0.0177
32 1 3.8377 -2.4853 -0.0838
33 1 6.6377 1.0559 0.5161
34 1 0.3577 0.2485 3.9590
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000232800279.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:44
Heat of formation + Delta-G solvation = -74.397440 kcal
Electronic energy + Delta-G solvation = -17561.633655 eV
Core-core repulsion = 14881.005239 eV
Total energy + Delta-G solvation = -2680.628416 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.92890 -37.69695 -35.19750 -33.93987 -31.36315 -30.69700 -26.56485 -26.47853
-25.29346 -23.20418 -20.81945 -20.46784 -17.64519 -17.23596 -16.76991 -15.61355
-14.97281 -14.51094 -14.04548 -13.71634 -13.35790 -13.01050 -12.72220 -12.14214
-12.08439 -11.74246 -11.59011 -11.09410 -11.05245 -10.82337 -10.67965 -10.52397
-10.24046 -10.18174 -9.99023 -9.89274 -9.66558 -9.27689 -9.08087 -8.31794
-6.52763 -5.75196 -3.24743 3.18541 3.44343 3.47576 3.50827 3.84067
4.54501 5.29979 5.34767 5.47236 5.56817 5.73505 5.98770 6.02619
6.11299 6.22483 6.26855 6.32759 6.42625 6.53168 6.62769 6.70537
6.79224 6.81188 6.93025 7.02602 7.28844 7.41020 7.54907 7.68985
7.87355 8.48048 8.87963 9.20910 9.78465 10.37589 11.31371
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.027878 B = 0.013561 C = 0.010520
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1004.133337 B = 2064.313740 C = 2661.000086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.072 4.072
3 C -0.140 4.140
4 C -0.096 4.096
5 C -0.135 4.135
6 C 0.172 3.828
7 N -0.574 5.574
8 C -0.238 4.238
9 H 0.059 0.941
10 C 0.017 3.983
11 N -0.891 5.891
12 Si 0.900 3.100
13 H -0.284 1.284
14 H -0.291 1.291
15 H -0.283 1.283
16 C 0.191 3.809
17 H 0.053 0.947
18 C 0.468 3.532
19 O -0.468 6.468
20 O -0.536 6.536
21 H 0.050 0.950
22 H 0.050 0.950
23 H 0.052 0.948
24 H 0.097 0.903
25 H 0.032 0.968
26 H 0.043 0.957
27 H 0.049 0.951
28 H 0.050 0.950
29 H 0.083 0.917
30 H 0.041 0.959
31 H 0.091 0.909
32 H 0.004 0.996
33 H 0.253 0.747
34 H 0.393 0.607
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.382 -2.363 -2.023 8.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.075 4.075
3 C -0.197 4.197
4 C -0.134 4.134
5 C -0.173 4.173
6 C 0.047 3.953
7 N -0.299 5.299
8 C -0.368 4.368
9 H 0.077 0.923
10 C -0.183 4.183
11 N -0.534 5.534
12 Si 0.730 3.270
13 H -0.211 1.211
14 H -0.217 1.217
15 H -0.209 1.209
16 C 0.084 3.916
17 H 0.071 0.929
18 C 0.308 3.692
19 O -0.351 6.351
20 O -0.348 6.348
21 H 0.069 0.931
22 H 0.069 0.931
23 H 0.071 0.929
24 H 0.116 0.884
25 H 0.051 0.949
26 H 0.062 0.938
27 H 0.067 0.933
28 H 0.069 0.931
29 H 0.102 0.898
30 H 0.060 0.940
31 H 0.109 0.891
32 H 0.022 0.978
33 H 0.063 0.937
34 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -7.911 -2.233 -2.323 8.542
hybrid contribution 0.462 0.696 1.194 1.457
sum -7.449 -1.536 -1.130 7.689
Atomic orbital electron populations
1.21922 0.95671 1.01256 1.01080 1.20925 0.93680 0.97207 0.95638
1.21929 1.05194 0.93410 0.99136 1.21464 0.97486 0.98794 0.95642
1.22023 0.93547 1.03598 0.98172 1.20801 0.99835 0.90963 0.83694
1.44151 0.97138 1.69343 1.19236 1.18890 0.98637 1.32721 0.86536
0.92317 1.25101 1.00279 0.96585 0.96286 1.69960 1.23033 1.40931
1.19512 0.86411 0.80870 0.77751 0.81934 1.21091 1.21685 1.20872
1.20366 0.89209 0.94910 0.87129 0.92936 1.23673 0.77046 0.83942
0.84554 1.90728 1.49292 1.27515 1.67535 1.84608 1.46635 1.61123
1.42412 0.93106 0.93102 0.92874 0.88430 0.94862 0.93754 0.93255
0.93131 0.89826 0.93981 0.89142 0.97820 0.93695 0.75071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.22 8.31 37.16 0.31 -1.91 16
2 C -0.07 -1.37 0.55 -154.37 -0.08 -1.45 16
3 C -0.14 -2.93 7.39 37.15 0.27 -2.65 16
4 C -0.10 -1.71 4.71 -26.68 -0.13 -1.84 16
5 C -0.13 -2.73 5.74 -26.61 -0.15 -2.88 16
6 C 0.17 3.93 5.66 -3.71 -0.02 3.91 16
7 N -0.57 -14.09 2.39 -166.09 -0.40 -14.49 16
8 C -0.24 -6.55 7.22 -15.06 -0.11 -6.66 16
9 H 0.06 1.68 6.78 -52.49 -0.36 1.33 16
10 C 0.02 0.48 4.91 -17.43 -0.09 0.40 16
11 N -0.89 -24.91 11.37 55.49 0.63 -24.28 16
12 Si 0.90 22.26 29.59 -169.99 -5.03 17.24 16
13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
14 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16
15 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
16 C 0.19 4.09 2.55 -68.75 -0.18 3.91 16
17 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
18 C 0.47 10.01 4.97 36.00 0.18 10.19 16
19 O -0.47 -11.66 13.49 -18.75 -0.25 -11.92 16
20 O -0.54 -9.10 13.10 -39.23 -0.51 -9.61 16
21 H 0.05 0.80 7.14 -51.93 -0.37 0.43 16
22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
24 H 0.10 2.45 5.98 -51.93 -0.31 2.14 16
25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
26 H 0.04 0.97 6.30 -51.93 -0.33 0.64 16
27 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16
28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
29 H 0.08 1.93 6.21 -51.93 -0.32 1.61 16
30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.09 2.31 6.00 -51.93 -0.31 2.00 16
32 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16
33 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16
34 H 0.39 4.90 9.10 45.56 0.41 5.32 16
LS Contribution 264.21 15.07 3.98 3.98
Total: -1.00 -30.08 264.21 -5.67 -35.75
By element:
Atomic # 1 Polarization: 6.41 SS G_CDS: -4.10 Total: 2.31 kcal
Atomic # 6 Polarization: 1.02 SS G_CDS: 0.01 Total: 1.03 kcal
Atomic # 7 Polarization: -39.01 SS G_CDS: 0.23 Total: -38.77 kcal
Atomic # 8 Polarization: -20.76 SS G_CDS: -0.77 Total: -21.53 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -30.08 -5.67 -35.75 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000232800279.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.645 kcal
(2) G-P(sol) polarization free energy of solvation -30.081 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds