Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48503 * 109.46941 * 240.00419 * 3 2 1 5 5 H 1.48505 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47516 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00138 * 174.87212 * 7 2 1 9 9 C 1.50696 * 120.00323 * 354.87000 * 7 2 1 10 10 C 1.52999 * 115.54982 * 294.92334 * 9 7 2 11 11 N 1.46893 * 109.47392 * 268.71291 * 10 9 7 12 12 C 1.47846 * 110.99918 * 55.60142 * 11 10 9 13 13 C 1.54897 * 104.80094 * 146.36516 * 12 11 10 14 14 H 1.09002 * 111.02406 * 81.03289 * 13 12 11 15 15 O 1.42908 * 110.99280 * 204.83849 * 13 12 11 16 16 C 1.55146 * 101.64950 * 322.92783 * 13 12 11 17 17 H 1.08998 * 110.85625 * 277.19597 * 16 13 12 18 18 O 1.42904 * 110.70331 * 154.03842 * 16 13 12 19 19 C 1.47442 * 111.00229 * 176.43793 * 11 10 9 20 20 C 1.53007 * 117.51709 * 80.62094 * 9 7 2 21 21 C 1.52997 * 117.50002 * 149.25043 * 9 7 2 22 22 H 0.96998 * 120.00073 * 5.09560 * 1 2 3 23 23 H 1.09001 * 109.47012 * 28.71689 * 10 9 7 24 24 H 1.09008 * 109.47084 * 148.70923 * 10 9 7 25 25 H 1.09010 * 110.37112 * 265.19837 * 12 11 10 26 26 H 1.09002 * 110.37324 * 27.53253 * 12 11 10 27 27 H 0.96698 * 113.99540 * 292.26450 * 15 13 12 28 28 H 0.96701 * 113.99910 * 184.95114 * 18 16 13 29 29 H 1.09001 * 109.88775 * 356.15474 * 19 11 10 30 30 H 1.09000 * 109.88641 * 117.17752 * 19 11 10 31 31 H 1.08996 * 117.49713 * 214.97322 * 20 9 7 32 32 H 1.08999 * 117.49874 * 359.97438 * 20 9 7 33 33 H 1.08994 * 117.50135 * 359.97438 * 21 9 7 34 34 H 1.09007 * 117.49883 * 144.97749 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0841 9 6 1.2557 -2.4966 0.1156 10 6 0.5220 -2.7202 1.4394 11 7 1.4076 -3.4225 2.3776 12 6 2.6769 -2.6866 2.5599 13 6 3.0760 -2.9452 4.0340 14 1 3.5606 -3.9154 4.1435 15 8 3.9141 -1.8987 4.5287 16 6 1.6945 -2.9312 4.7398 17 1 1.3791 -1.9103 4.9553 18 8 1.7309 -3.7102 5.9373 19 6 0.7635 -3.5807 3.6944 20 6 0.6097 -3.0561 -1.1535 21 6 1.8591 -3.7221 -0.5735 22 1 -0.4850 0.8367 -0.0746 23 1 0.2344 -1.7577 1.8624 24 1 -0.3705 -3.3208 1.2632 25 1 3.4408 -3.0749 1.8861 26 1 2.5254 -1.6207 2.3892 27 1 4.7886 -1.8674 4.1170 28 1 0.8738 -3.7966 6.3766 29 1 -0.2040 -3.0787 3.6967 30 1 0.6323 -4.6394 3.9182 31 1 -0.3381 -3.5835 -1.0453 32 1 0.7258 -2.4818 -2.0726 33 1 2.7973 -3.5862 -1.1112 34 1 1.7336 -4.6877 -0.0835 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236526705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -89.984450 kcal Electronic energy + Delta-G solvation = -16678.330212 eV Core-core repulsion = 13997.025892 eV Total energy + Delta-G solvation = -2681.304320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63368 -38.44144 -37.04315 -36.16829 -34.04906 -30.82287 -29.17695 -27.64329 -26.14933 -22.88521 -22.41796 -21.88154 -20.66847 -19.01741 -18.15398 -17.64477 -16.76842 -16.49426 -16.17731 -15.75554 -15.01637 -14.70879 -14.57133 -14.30213 -13.73670 -13.57616 -13.23842 -13.10463 -12.83772 -12.78322 -12.47219 -12.35753 -11.95947 -11.53819 -11.27571 -11.14583 -10.99715 -10.77728 -10.43281 -9.98604 -9.11237 -8.10095 -6.18352 1.39847 1.42082 1.47405 2.41109 2.84832 3.03802 3.16172 3.42427 3.54856 3.76224 4.02401 4.06945 4.34019 4.35348 4.52257 4.58886 4.67623 4.73612 4.88527 4.98358 5.06045 5.08542 5.12060 5.22979 5.29928 5.61341 5.67461 5.79030 6.15358 6.24973 6.44402 6.77922 6.81345 6.87047 7.46481 8.96950 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.010371 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.306929 B = 2699.061075 C = 3280.249072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.495 4.495 8 H 0.052 0.948 9 C 0.028 3.972 10 C 0.112 3.888 11 N -0.517 5.517 12 C 0.035 3.965 13 C 0.103 3.897 14 H 0.087 0.913 15 O -0.574 6.574 16 C 0.096 3.904 17 H 0.057 0.943 18 O -0.565 6.565 19 C 0.015 3.985 20 C -0.185 4.185 21 C -0.168 4.168 22 H 0.259 0.741 23 H 0.017 0.983 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.398 0.602 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -6.030 7.555 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.533 4.533 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.016 4.016 11 N -0.243 5.243 12 C -0.093 4.093 13 C 0.043 3.957 14 H 0.105 0.895 15 O -0.382 6.382 16 C 0.036 3.964 17 H 0.074 0.926 18 O -0.372 6.372 19 C -0.113 4.113 20 C -0.223 4.223 21 C -0.205 4.205 22 H 0.068 0.932 23 H 0.036 0.964 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.248 0.752 28 H 0.248 0.752 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.991 -6.303 7.638 10.345 hybrid contribution -0.248 1.919 -0.344 1.965 sum 2.744 -4.384 7.294 8.941 Atomic orbital electron populations 1.70059 1.06934 1.27212 1.50293 1.25584 0.95462 1.01536 0.94830 0.85905 0.78652 0.80083 0.78812 1.19785 1.21429 1.19715 1.20682 0.92510 0.90056 1.50017 0.92941 1.18859 0.97944 0.91575 0.88886 1.21550 0.93180 0.94026 0.92803 1.63609 1.04504 1.47979 1.08202 1.23450 0.92816 0.97955 0.95119 1.22898 0.90546 0.90976 0.91289 0.89540 1.86421 1.30769 1.54198 1.66824 1.22791 0.94734 0.93809 0.85073 0.92555 1.86460 1.38086 1.73874 1.38803 1.23564 0.96927 1.02370 0.88486 1.22711 0.95441 1.04613 0.99528 1.22714 0.95739 0.97272 1.04755 0.93240 0.96444 0.93454 0.90138 0.93560 0.75182 0.75193 0.92414 0.88172 0.91111 0.92270 0.90886 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.79 12.56 21.45 0.27 -50.52 16 2 C 0.03 1.39 5.22 84.65 0.44 1.83 16 3 Si 0.94 42.71 29.54 68.60 2.03 44.73 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.49 -25.81 6.91 25.60 0.18 -25.63 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 9 C 0.03 1.33 0.88 -52.93 -0.05 1.28 16 10 C 0.11 5.01 4.49 86.30 0.39 5.40 16 11 N -0.52 -19.40 5.04 -885.56 -4.46 -23.86 16 12 C 0.03 1.30 5.13 86.77 0.45 1.75 16 13 C 0.10 3.26 4.15 31.98 0.13 3.39 16 14 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 15 O -0.57 -17.96 13.47 -148.98 -2.01 -19.97 16 16 C 0.10 2.95 4.06 31.77 0.13 3.07 16 17 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 18 O -0.56 -14.84 13.39 -148.98 -2.00 -16.84 16 19 C 0.01 0.46 6.66 86.64 0.58 1.04 16 20 C -0.18 -8.48 9.88 30.60 0.30 -8.18 16 21 C -0.17 -7.01 9.71 30.59 0.30 -6.71 16 22 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 23 H 0.02 0.89 7.22 -2.39 -0.02 0.87 16 24 H 0.05 2.06 7.87 -2.38 -0.02 2.04 16 25 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 26 H 0.05 2.07 6.51 -2.39 -0.02 2.05 16 27 H 0.40 8.77 9.12 -74.06 -0.68 8.10 16 28 H 0.40 6.47 9.11 -74.06 -0.67 5.80 16 29 H 0.06 1.79 7.57 -2.39 -0.02 1.77 16 30 H 0.10 2.71 8.06 -2.39 -0.02 2.70 16 31 H 0.07 3.07 8.03 -2.39 -0.02 3.05 16 32 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 Total: -1.00 -61.91 280.91 -3.57 -65.48 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.25 Total: 23.72 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 2.84 Total: -22.75 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -4.19 Total: -74.38 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -4.00 Total: -36.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -61.91 -3.57 -65.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236526705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.501 kcal (2) G-P(sol) polarization free energy of solvation -61.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds