Wall clock time and date at job start Mon Mar 30 2020 03:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 C 1.53003 * 109.47441 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47427 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46881 * 180.02562 * 5 4 3 7 7 H 1.08999 * 110.46839 * 52.36753 * 6 5 4 8 8 O 1.45703 * 110.51973 * 289.58262 * 6 5 4 9 9 C 1.33774 * 109.47725 * 241.37464 * 8 6 5 10 10 O 1.21509 * 123.06996 * 179.97438 * 9 8 6 11 11 N 1.34317 * 113.90007 * 359.90990 * 9 8 6 12 12 C 1.47091 * 108.70708 * 0.14220 * 11 9 8 13 13 H 1.08998 * 110.56251 * 241.21924 * 12 11 9 14 14 C 1.50706 * 110.56439 * 118.52121 * 12 11 9 15 15 H 1.08005 * 119.99758 * 243.44239 * 14 12 11 16 16 C 1.37871 * 120.00102 * 63.44124 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47031 * 300.00009 * 1 2 3 24 24 H 1.08999 * 109.47146 * 59.99686 * 1 2 3 25 25 H 1.09002 * 109.46701 * 240.00317 * 2 1 3 26 26 H 1.08999 * 109.47146 * 120.00314 * 2 1 3 27 27 H 1.09002 * 109.47057 * 60.00534 * 3 2 1 28 28 H 1.08999 * 109.47350 * 300.00189 * 3 2 1 29 29 H 1.08999 * 109.47039 * 59.99645 * 4 3 2 30 30 H 1.08999 * 109.46996 * 300.00397 * 4 3 2 31 31 H 1.08993 * 109.47026 * 59.99907 * 5 4 3 32 32 H 1.08999 * 109.47033 * 299.99978 * 5 4 3 33 33 H 0.97003 * 125.73409 * 180.09251 * 11 9 8 34 34 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 -0.0013 7 1 5.9905 2.2620 -0.8108 8 8 6.1218 2.4266 1.2836 9 6 6.8446 3.4001 1.8488 10 8 7.3872 3.2810 2.9294 11 7 6.9173 4.5213 1.1127 12 6 6.1501 4.3226 -0.1265 13 1 6.7992 4.4134 -0.9974 14 6 5.0142 5.3095 -0.2098 15 1 3.9928 4.9584 -0.2111 16 6 5.2788 6.6606 -0.2843 17 7 6.5225 7.0881 -0.2833 18 14 3.8708 7.8837 -0.3883 19 1 4.4172 9.2628 -0.4577 20 1 3.0646 7.6084 -1.6047 21 1 3.0111 7.7524 0.8155 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6766 1.9563 -0.8899 29 1 3.9330 0.9288 -0.8908 30 1 3.9337 0.9285 0.8891 31 1 3.7170 3.3983 0.8904 32 1 3.7163 3.3994 -0.8895 33 1 7.3954 5.3292 1.3567 34 1 7.2536 6.4529 -0.2296 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238222348.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:36 Heat of formation + Delta-G solvation = -107.184470 kcal Electronic energy + Delta-G solvation = -16132.005098 eV Core-core repulsion = 13449.954929 eV Total energy + Delta-G solvation = -2682.050169 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63500 -36.78268 -35.74042 -34.67605 -32.57054 -31.93524 -29.02585 -25.90724 -24.33427 -22.10902 -21.51818 -20.80094 -20.54949 -17.42754 -17.11441 -15.73541 -15.56959 -15.22778 -14.25290 -14.07717 -13.85836 -13.74145 -13.32421 -13.00103 -12.75626 -12.50418 -12.13267 -11.64711 -11.28495 -11.10222 -10.95636 -10.70013 -10.65627 -10.37901 -10.26554 -10.21742 -9.82952 -9.68853 -9.34176 -8.77812 -7.93952 -6.71399 -4.53804 3.26211 3.29706 3.47326 3.63603 3.77343 4.26425 4.55203 4.82376 5.00555 5.14057 5.16168 5.30892 5.39026 5.47827 5.60373 5.69425 5.82842 5.89223 5.95289 6.08143 6.21390 6.23465 6.27136 6.43393 6.47879 6.59683 6.73653 6.81986 7.53518 7.85453 8.01800 8.30338 8.44829 9.10190 9.22403 10.63048 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.008813 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.386826 B = 3176.481739 C = 4332.961781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.124 4.124 5 C -0.108 4.108 6 C 0.081 3.919 7 H 0.092 0.908 8 O -0.341 6.341 9 C 0.636 3.364 10 O -0.569 6.569 11 N -0.722 5.722 12 C 0.204 3.796 13 H 0.051 0.949 14 C -0.617 4.617 15 H 0.080 0.920 16 C 0.033 3.967 17 N -0.895 5.895 18 Si 1.070 2.930 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.285 1.285 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.424 0.576 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -8.304 -3.518 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.162 4.162 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.109 0.891 8 O -0.251 6.251 9 C 0.388 3.612 10 O -0.459 6.459 11 N -0.392 5.392 12 C 0.103 3.897 13 H 0.069 0.931 14 C -0.656 4.656 15 H 0.098 0.902 16 C -0.175 4.175 17 N -0.530 5.530 18 Si 0.897 3.103 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.211 1.211 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.266 0.734 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.358 -7.139 -3.078 11.415 hybrid contribution 0.628 -1.139 0.106 1.305 sum -7.730 -8.278 -2.972 11.709 Atomic orbital electron populations 1.21782 0.96262 1.01152 1.01773 1.21543 0.95475 0.97458 1.01781 1.21605 0.95794 0.96148 1.02106 1.21702 0.94984 0.97677 1.01808 1.21910 0.92520 0.95624 1.04462 1.23821 0.95804 0.95676 0.82214 0.89062 1.87112 1.64010 1.38802 1.35211 1.18748 0.78295 0.80285 0.83854 1.90929 1.51741 1.82861 1.20321 1.47102 1.54201 1.15154 1.22725 1.20205 0.92608 0.92074 0.84822 0.93109 1.22442 0.93472 0.92866 1.56793 0.90244 1.26017 1.01389 0.98112 0.91946 1.70908 0.99088 1.38511 1.44503 0.83498 0.74001 0.75902 0.76875 1.20542 1.20945 1.21100 0.93156 0.92820 0.92836 0.92271 0.92205 0.92052 0.92013 0.92471 0.91930 0.90629 0.88787 0.73352 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.12 -1.48 5.21 -26.73 -0.14 -1.62 16 4 C -0.12 -1.77 5.16 -26.73 -0.14 -1.91 16 5 C -0.11 -1.86 3.45 -26.73 -0.09 -1.95 16 6 C 0.08 1.55 3.82 -26.16 -0.10 1.45 16 7 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 8 O -0.34 -7.47 10.63 -37.84 -0.40 -7.87 16 9 C 0.64 15.37 9.16 53.85 0.49 15.86 16 10 O -0.57 -15.19 18.04 -19.12 -0.34 -15.54 16 11 N -0.72 -16.79 5.65 -59.27 -0.33 -17.13 16 12 C 0.20 4.55 3.11 -68.19 -0.21 4.34 16 13 H 0.05 1.15 8.00 -51.93 -0.42 0.74 16 14 C -0.62 -14.80 7.97 -34.44 -0.27 -15.07 16 15 H 0.08 1.82 4.79 -52.48 -0.25 1.56 16 16 C 0.03 0.82 5.42 -17.82 -0.10 0.72 16 17 N -0.90 -23.94 13.42 55.43 0.74 -23.20 16 18 Si 1.07 22.59 29.90 -169.99 -5.08 17.51 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 31 H 0.08 1.45 7.53 -51.93 -0.39 1.06 16 32 H 0.09 1.60 6.78 -51.93 -0.35 1.24 16 33 H 0.42 9.97 7.62 -40.82 -0.31 9.66 16 34 H 0.27 7.03 5.95 -40.82 -0.24 6.79 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -28.34 280.11 -6.53 -34.87 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.98 Total: 7.90 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.35 Total: -0.77 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.41 Total: -40.32 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.75 Total: -23.41 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.08 Total: 17.51 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.34 -6.53 -34.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238222348.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.313 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds