Wall clock time and date at job start Mon Mar 30 2020 03:35:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52998 * 109.47156 * 2 1
4 4 C 1.53003 * 109.47441 * 180.02562 * 3 2 1
5 5 C 1.52998 * 109.47427 * 180.02562 * 4 3 2
6 6 C 1.53004 * 109.46881 * 180.02562 * 5 4 3
7 7 H 1.08999 * 110.46839 * 52.36753 * 6 5 4
8 8 O 1.45703 * 110.51973 * 289.58262 * 6 5 4
9 9 C 1.33774 * 109.47725 * 241.37464 * 8 6 5
10 10 O 1.21509 * 123.06996 * 179.97438 * 9 8 6
11 11 N 1.34317 * 113.90007 * 359.90990 * 9 8 6
12 12 C 1.47091 * 108.70708 * 0.14220 * 11 9 8
13 13 H 1.08998 * 110.56251 * 241.21924 * 12 11 9
14 14 C 1.50706 * 110.56439 * 118.52121 * 12 11 9
15 15 H 1.08005 * 119.99758 * 243.44239 * 14 12 11
16 16 C 1.37871 * 120.00102 * 63.44124 * 14 12 11
17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12
18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12
19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14
20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14
21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14
22 22 H 1.09000 * 109.47124 * 179.97438 * 1 2 3
23 23 H 1.09008 * 109.47031 * 300.00009 * 1 2 3
24 24 H 1.08999 * 109.47146 * 59.99686 * 1 2 3
25 25 H 1.09002 * 109.46701 * 240.00317 * 2 1 3
26 26 H 1.08999 * 109.47146 * 120.00314 * 2 1 3
27 27 H 1.09002 * 109.47057 * 60.00534 * 3 2 1
28 28 H 1.08999 * 109.47350 * 300.00189 * 3 2 1
29 29 H 1.08999 * 109.47039 * 59.99645 * 4 3 2
30 30 H 1.08999 * 109.46996 * 300.00397 * 4 3 2
31 31 H 1.08993 * 109.47026 * 59.99907 * 5 4 3
32 32 H 1.08999 * 109.47033 * 299.99978 * 5 4 3
33 33 H 0.97003 * 125.73409 * 180.09251 * 11 9 8
34 34 H 0.97001 * 119.99646 * 359.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 6 4.0800 2.8850 0.0000
6 6 5.6100 2.8850 -0.0013
7 1 5.9905 2.2620 -0.8108
8 8 6.1218 2.4266 1.2836
9 6 6.8446 3.4001 1.8488
10 8 7.3872 3.2810 2.9294
11 7 6.9173 4.5213 1.1127
12 6 6.1501 4.3226 -0.1265
13 1 6.7992 4.4134 -0.9974
14 6 5.0142 5.3095 -0.2098
15 1 3.9928 4.9584 -0.2111
16 6 5.2788 6.6606 -0.2843
17 7 6.5225 7.0881 -0.2833
18 14 3.8708 7.8837 -0.3883
19 1 4.4172 9.2628 -0.4577
20 1 3.0646 7.6084 -1.6047
21 1 3.0111 7.7524 0.8155
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8899
25 1 1.8932 -0.5138 -0.8901
26 1 1.8933 -0.5139 0.8899
27 1 1.6767 1.9563 0.8901
28 1 1.6766 1.9563 -0.8899
29 1 3.9330 0.9288 -0.8908
30 1 3.9337 0.9285 0.8891
31 1 3.7170 3.3983 0.8904
32 1 3.7163 3.3994 -0.8895
33 1 7.3954 5.3292 1.3567
34 1 7.2536 6.4529 -0.2296
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238222348.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:36
Heat of formation + Delta-G solvation = -107.184470 kcal
Electronic energy + Delta-G solvation = -16132.005098 eV
Core-core repulsion = 13449.954929 eV
Total energy + Delta-G solvation = -2682.050169 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.63500 -36.78268 -35.74042 -34.67605 -32.57054 -31.93524 -29.02585 -25.90724
-24.33427 -22.10902 -21.51818 -20.80094 -20.54949 -17.42754 -17.11441 -15.73541
-15.56959 -15.22778 -14.25290 -14.07717 -13.85836 -13.74145 -13.32421 -13.00103
-12.75626 -12.50418 -12.13267 -11.64711 -11.28495 -11.10222 -10.95636 -10.70013
-10.65627 -10.37901 -10.26554 -10.21742 -9.82952 -9.68853 -9.34176 -8.77812
-7.93952 -6.71399 -4.53804 3.26211 3.29706 3.47326 3.63603 3.77343
4.26425 4.55203 4.82376 5.00555 5.14057 5.16168 5.30892 5.39026
5.47827 5.60373 5.69425 5.82842 5.89223 5.95289 6.08143 6.21390
6.23465 6.27136 6.43393 6.47879 6.59683 6.73653 6.81986 7.53518
7.85453 8.01800 8.30338 8.44829 9.10190 9.22403 10.63048
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.019421 B = 0.008813 C = 0.006461
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1441.386826 B = 3176.481739 C = 4332.961781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.125 4.125
3 C -0.119 4.119
4 C -0.124 4.124
5 C -0.108 4.108
6 C 0.081 3.919
7 H 0.092 0.908
8 O -0.341 6.341
9 C 0.636 3.364
10 O -0.569 6.569
11 N -0.722 5.722
12 C 0.204 3.796
13 H 0.051 0.949
14 C -0.617 4.617
15 H 0.080 0.920
16 C 0.033 3.967
17 N -0.895 5.895
18 Si 1.070 2.930
19 H -0.280 1.280
20 H -0.283 1.283
21 H -0.285 1.285
22 H 0.049 0.951
23 H 0.053 0.947
24 H 0.053 0.947
25 H 0.059 0.941
26 H 0.059 0.941
27 H 0.061 0.939
28 H 0.061 0.939
29 H 0.057 0.943
30 H 0.062 0.938
31 H 0.075 0.925
32 H 0.094 0.906
33 H 0.424 0.576
34 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.150 -8.304 -3.518 12.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.163 4.163
3 C -0.157 4.157
4 C -0.162 4.162
5 C -0.145 4.145
6 C 0.025 3.975
7 H 0.109 0.891
8 O -0.251 6.251
9 C 0.388 3.612
10 O -0.459 6.459
11 N -0.392 5.392
12 C 0.103 3.897
13 H 0.069 0.931
14 C -0.656 4.656
15 H 0.098 0.902
16 C -0.175 4.175
17 N -0.530 5.530
18 Si 0.897 3.103
19 H -0.205 1.205
20 H -0.209 1.209
21 H -0.211 1.211
22 H 0.068 0.932
23 H 0.072 0.928
24 H 0.072 0.928
25 H 0.077 0.923
26 H 0.078 0.922
27 H 0.079 0.921
28 H 0.080 0.920
29 H 0.075 0.925
30 H 0.081 0.919
31 H 0.094 0.906
32 H 0.112 0.888
33 H 0.266 0.734
34 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -8.358 -7.139 -3.078 11.415
hybrid contribution 0.628 -1.139 0.106 1.305
sum -7.730 -8.278 -2.972 11.709
Atomic orbital electron populations
1.21782 0.96262 1.01152 1.01773 1.21543 0.95475 0.97458 1.01781
1.21605 0.95794 0.96148 1.02106 1.21702 0.94984 0.97677 1.01808
1.21910 0.92520 0.95624 1.04462 1.23821 0.95804 0.95676 0.82214
0.89062 1.87112 1.64010 1.38802 1.35211 1.18748 0.78295 0.80285
0.83854 1.90929 1.51741 1.82861 1.20321 1.47102 1.54201 1.15154
1.22725 1.20205 0.92608 0.92074 0.84822 0.93109 1.22442 0.93472
0.92866 1.56793 0.90244 1.26017 1.01389 0.98112 0.91946 1.70908
0.99088 1.38511 1.44503 0.83498 0.74001 0.75902 0.76875 1.20542
1.20945 1.21100 0.93156 0.92820 0.92836 0.92271 0.92205 0.92052
0.92013 0.92471 0.91930 0.90629 0.88787 0.73352 0.92010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16
2 C -0.13 -1.35 5.93 -26.73 -0.16 -1.51 16
3 C -0.12 -1.48 5.21 -26.73 -0.14 -1.62 16
4 C -0.12 -1.77 5.16 -26.73 -0.14 -1.91 16
5 C -0.11 -1.86 3.45 -26.73 -0.09 -1.95 16
6 C 0.08 1.55 3.82 -26.16 -0.10 1.45 16
7 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16
8 O -0.34 -7.47 10.63 -37.84 -0.40 -7.87 16
9 C 0.64 15.37 9.16 53.85 0.49 15.86 16
10 O -0.57 -15.19 18.04 -19.12 -0.34 -15.54 16
11 N -0.72 -16.79 5.65 -59.27 -0.33 -17.13 16
12 C 0.20 4.55 3.11 -68.19 -0.21 4.34 16
13 H 0.05 1.15 8.00 -51.93 -0.42 0.74 16
14 C -0.62 -14.80 7.97 -34.44 -0.27 -15.07 16
15 H 0.08 1.82 4.79 -52.48 -0.25 1.56 16
16 C 0.03 0.82 5.42 -17.82 -0.10 0.72 16
17 N -0.90 -23.94 13.42 55.43 0.74 -23.20 16
18 Si 1.07 22.59 29.90 -169.99 -5.08 17.51 16
19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16
21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16
22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
23 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16
24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
30 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16
31 H 0.08 1.45 7.53 -51.93 -0.39 1.06 16
32 H 0.09 1.60 6.78 -51.93 -0.35 1.24 16
33 H 0.42 9.97 7.62 -40.82 -0.31 9.66 16
34 H 0.27 7.03 5.95 -40.82 -0.24 6.79 16
LS Contribution 280.11 15.07 4.22 4.22
Total: -1.00 -28.34 280.11 -6.53 -34.87
By element:
Atomic # 1 Polarization: 12.88 SS G_CDS: -4.98 Total: 7.90 kcal
Atomic # 6 Polarization: -0.42 SS G_CDS: -0.35 Total: -0.77 kcal
Atomic # 7 Polarization: -40.73 SS G_CDS: 0.41 Total: -40.32 kcal
Atomic # 8 Polarization: -22.66 SS G_CDS: -0.75 Total: -23.41 kcal
Atomic # 14 Polarization: 22.59 SS G_CDS: -5.08 Total: 17.51 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -28.34 -6.53 -34.87 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238222348.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.313 kcal
(2) G-P(sol) polarization free energy of solvation -28.340 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.184 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds