Wall clock time and date at job start Mon Mar 30 2020 03:29:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52995 * 109.62982 * 2 1
4 4 H 1.08999 * 110.59543 * 56.76198 * 3 2 1
5 5 C 1.54942 * 110.66888 * 293.75597 * 3 2 1
6 6 C 1.54779 * 102.83483 * 204.27923 * 5 3 2
7 7 C 1.53992 * 105.21587 * 21.72861 * 6 5 3
8 8 N 1.47905 * 107.05493 * 1.36264 * 7 6 5
9 9 O 1.43372 * 109.63715 * 239.60471 * 2 1 3
10 10 C 1.44189 * 107.29225 * 240.79204 * 9 2 1
11 11 C 1.54918 * 103.07819 * 21.43265 * 10 9 2
12 12 H 1.09003 * 110.97588 * 82.58094 * 11 10 9
13 13 C 1.50695 * 110.97717 * 206.33029 * 11 10 9
14 14 H 1.07995 * 120.00496 * 356.89013 * 13 11 10
15 15 C 1.37880 * 119.99572 * 176.88947 * 13 11 10
16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11
17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11
18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13
19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13
20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13
21 21 O 1.43801 * 109.59515 * 120.24116 * 2 1 3
22 22 H 1.09000 * 109.46979 * 179.69388 * 1 2 3
23 23 H 1.09000 * 109.47151 * 299.69187 * 1 2 3
24 24 H 1.08995 * 109.46896 * 59.69718 * 1 2 3
25 25 H 1.08999 * 110.72077 * 322.50557 * 5 3 2
26 26 H 1.09001 * 110.72011 * 85.78838 * 5 3 2
27 27 H 1.08992 * 110.15181 * 262.84227 * 6 5 3
28 28 H 1.09010 * 110.47410 * 140.76693 * 6 5 3
29 29 H 1.09000 * 109.91466 * 242.01791 * 7 6 5
30 30 H 1.08992 * 110.08946 * 120.81414 * 7 6 5
31 31 H 1.00898 * 110.99868 * 95.19076 * 8 7 6
32 32 H 1.09000 * 110.69570 * 263.03453 * 10 9 2
33 33 H 1.09004 * 110.84569 * 139.89773 * 10 9 2
34 34 H 0.97006 * 119.99995 * 359.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0439 1.4410 0.0000
4 1 1.6460 1.9901 0.8534
5 6 1.6776 2.1523 -1.3269
6 6 2.7479 3.2660 -1.4269
7 6 3.9104 2.7904 -0.5360
8 7 3.5290 1.4680 0.0057
9 8 2.0118 -0.6832 -1.1647
10 6 2.7885 -1.8097 -0.7102
11 6 2.2653 -2.0381 0.7300
12 1 1.3461 -2.6240 0.7228
13 6 3.3150 -2.6969 1.5872
14 1 4.2610 -2.9877 1.1548
15 6 3.0678 -2.9284 2.9238
16 7 1.9157 -2.5747 3.4503
17 14 4.3693 -3.7443 3.9867
18 1 5.5998 -2.9129 3.9882
19 1 4.6816 -5.0898 3.4414
20 1 3.8614 -3.8783 5.3757
21 8 2.0122 -0.6823 1.1704
22 1 -0.3633 -1.0277 -0.0055
23 1 -0.3633 0.5090 0.8927
24 1 -0.3633 0.5185 -0.8872
25 1 1.7588 1.4644 -2.1684
26 1 0.6763 2.5796 -1.2717
27 1 2.3458 4.2077 -1.0536
28 1 3.0836 3.3807 -2.4576
29 1 4.0649 3.4956 0.2807
30 1 4.8222 2.7009 -1.1265
31 1 3.9064 0.7229 -0.5604
32 1 3.8509 -1.5661 -0.6999
33 1 2.6016 -2.6858 -1.3314
34 1 1.2400 -2.1507 2.8985
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000258444857.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:11
Heat of formation + Delta-G solvation = -98.181765 kcal
Electronic energy + Delta-G solvation = -17009.876799 eV
Core-core repulsion = 14328.217017 eV
Total energy + Delta-G solvation = -2681.659782 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.92935 -37.56859 -34.14401 -32.91016 -31.29979 -29.67621 -27.99991 -27.44511
-24.30601 -22.45979 -21.44712 -20.70332 -19.65679 -17.41782 -16.45918 -15.78226
-15.11990 -15.00371 -14.08682 -13.74925 -13.62337 -13.46608 -13.28592 -12.73599
-12.48231 -11.98178 -11.66923 -11.58602 -11.36311 -11.26772 -11.05047 -10.80234
-10.75133 -10.49643 -10.38058 -10.06773 -9.15213 -8.92336 -8.61293 -8.31799
-8.17068 -6.45226 -4.24618 3.42067 3.46384 3.63731 4.26368 4.49023
4.51774 4.67050 4.91971 5.07871 5.30444 5.41612 5.53779 5.56881
5.66509 5.74050 5.92590 5.95553 5.96678 6.01074 6.04987 6.10901
6.17403 6.28440 6.37683 6.47665 6.50798 6.72892 7.14409 7.16997
7.76031 7.94321 8.20548 8.36327 8.76045 9.57128 10.96243
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.036613 B = 0.008569 C = 0.007939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 764.572297 B = 3266.780556 C = 3525.860046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.247 3.753
3 C 0.079 3.921
4 H 0.093 0.907
5 C -0.147 4.147
6 C -0.150 4.150
7 C 0.040 3.960
8 N -0.653 5.653
9 O -0.399 6.399
10 C 0.031 3.969
11 C 0.167 3.833
12 H 0.030 0.970
13 C -0.605 4.605
14 H 0.061 0.939
15 C 0.035 3.965
16 N -0.885 5.885
17 Si 1.072 2.928
18 H -0.285 1.285
19 H -0.286 1.286
20 H -0.281 1.281
21 O -0.354 6.354
22 H 0.061 0.939
23 H 0.069 0.931
24 H 0.060 0.940
25 H 0.076 0.924
26 H 0.069 0.931
27 H 0.065 0.935
28 H 0.063 0.937
29 H 0.072 0.928
30 H 0.060 0.940
31 H 0.341 0.659
32 H 0.066 0.934
33 H 0.078 0.922
34 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.116 7.553 -8.707 11.528
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.169 3.831
3 C -0.032 4.032
4 H 0.111 0.889
5 C -0.187 4.187
6 C -0.190 4.190
7 C -0.090 4.090
8 N -0.281 5.281
9 O -0.321 6.321
10 C -0.045 4.045
11 C 0.112 3.888
12 H 0.048 0.952
13 C -0.642 4.642
14 H 0.079 0.921
15 C -0.174 4.174
16 N -0.519 5.519
17 Si 0.899 3.101
18 H -0.211 1.211
19 H -0.213 1.213
20 H -0.206 1.206
21 O -0.275 6.275
22 H 0.080 0.920
23 H 0.088 0.912
24 H 0.079 0.921
25 H 0.095 0.905
26 H 0.087 0.913
27 H 0.083 0.917
28 H 0.082 0.918
29 H 0.090 0.910
30 H 0.079 0.921
31 H 0.158 0.842
32 H 0.084 0.916
33 H 0.096 0.904
34 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 0.297 7.326 -6.440 9.759
hybrid contribution -0.591 0.444 -2.641 2.743
sum -0.294 7.770 -9.082 11.956
Atomic orbital electron populations
1.22315 0.95225 1.02846 1.01904 1.23107 0.91829 0.90160 0.78032
1.22970 0.88895 0.94494 0.96806 0.88904 1.23132 0.98741 0.97553
0.99251 1.22822 0.96965 0.98919 1.00251 1.22760 0.96942 0.92540
0.96735 1.62681 1.07590 1.03389 1.54471 1.88674 1.69853 1.42924
1.30676 1.24211 0.95532 0.87439 0.97289 1.21583 0.96024 0.81196
0.89973 0.95197 1.21718 1.02646 1.42566 0.97270 0.92129 1.25916
1.00070 0.95180 0.96266 1.70692 1.05540 1.35888 1.39787 0.83514
0.74648 0.75851 0.76051 1.21130 1.21287 1.20624 1.89646 1.84642
1.24628 1.28611 0.91983 0.91189 0.92072 0.90502 0.91264 0.91651
0.91838 0.90999 0.92088 0.84176 0.91627 0.90392 0.91119
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.95 9.05 37.15 0.34 -2.62 16
2 C 0.25 5.07 0.83 -26.74 -0.02 5.05 16
3 C 0.08 1.43 2.88 -65.79 -0.19 1.24 16
4 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16
5 C -0.15 -2.15 5.64 -24.77 -0.14 -2.29 16
6 C -0.15 -1.91 6.93 -25.28 -0.18 -2.08 16
7 C 0.04 0.58 7.52 -2.75 -0.02 0.56 16
8 N -0.65 -12.11 7.23 -103.18 -0.75 -12.85 16
9 O -0.40 -8.13 9.16 -59.03 -0.54 -8.67 16
10 C 0.03 0.68 7.19 38.17 0.27 0.95 16
11 C 0.17 4.28 2.77 -26.87 -0.07 4.21 16
12 H 0.03 0.81 8.01 -51.93 -0.42 0.40 16
13 C -0.61 -17.03 8.84 -34.44 -0.30 -17.33 16
14 H 0.06 1.66 7.78 -52.49 -0.41 1.25 16
15 C 0.03 0.99 5.44 -17.82 -0.10 0.89 16
16 N -0.89 -26.99 13.60 55.43 0.75 -26.24 16
17 Si 1.07 25.07 29.90 -169.99 -5.08 19.99 16
18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
19 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16
20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
21 O -0.35 -9.08 9.76 -59.03 -0.58 -9.65 16
22 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
24 H 0.06 0.93 7.42 -51.93 -0.39 0.55 16
25 H 0.08 1.19 7.19 -51.93 -0.37 0.82 16
26 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16
27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
28 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16
29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.34 6.57 7.37 -39.29 -0.29 6.28 16
32 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16
33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16
34 H 0.28 8.55 6.71 -40.82 -0.27 8.27 16
LS Contribution 273.41 15.07 4.12 4.12
Total: -1.00 -30.70 273.41 -7.63 -38.32
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: -5.14 Total: 6.41 kcal
Atomic # 6 Polarization: -11.01 SS G_CDS: -0.41 Total: -11.42 kcal
Atomic # 7 Polarization: -39.10 SS G_CDS: 0.01 Total: -39.09 kcal
Atomic # 8 Polarization: -17.21 SS G_CDS: -1.12 Total: -18.32 kcal
Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal
Total LS contribution 4.12 Total: 4.12 kcal
Total: -30.70 -7.63 -38.32 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258444857.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.860 kcal
(2) G-P(sol) polarization free energy of solvation -30.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.556 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds