Wall clock time and date at job start Mon Mar 30 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.62982 * 2 1 4 4 H 1.08999 * 110.59543 * 56.76198 * 3 2 1 5 5 C 1.54942 * 110.66888 * 293.75597 * 3 2 1 6 6 C 1.54779 * 102.83483 * 204.27923 * 5 3 2 7 7 C 1.53992 * 105.21587 * 21.72861 * 6 5 3 8 8 N 1.47905 * 107.05493 * 1.36264 * 7 6 5 9 9 O 1.43372 * 109.63715 * 239.60471 * 2 1 3 10 10 C 1.44189 * 107.29225 * 240.79204 * 9 2 1 11 11 C 1.54918 * 103.07819 * 21.43265 * 10 9 2 12 12 H 1.09003 * 110.97588 * 82.58094 * 11 10 9 13 13 C 1.50695 * 110.97717 * 206.33029 * 11 10 9 14 14 H 1.07995 * 120.00496 * 356.89013 * 13 11 10 15 15 C 1.37880 * 119.99572 * 176.88947 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 O 1.43801 * 109.59515 * 120.24116 * 2 1 3 22 22 H 1.09000 * 109.46979 * 179.69388 * 1 2 3 23 23 H 1.09000 * 109.47151 * 299.69187 * 1 2 3 24 24 H 1.08995 * 109.46896 * 59.69718 * 1 2 3 25 25 H 1.08999 * 110.72077 * 322.50557 * 5 3 2 26 26 H 1.09001 * 110.72011 * 85.78838 * 5 3 2 27 27 H 1.08992 * 110.15181 * 262.84227 * 6 5 3 28 28 H 1.09010 * 110.47410 * 140.76693 * 6 5 3 29 29 H 1.09000 * 109.91466 * 242.01791 * 7 6 5 30 30 H 1.08992 * 110.08946 * 120.81414 * 7 6 5 31 31 H 1.00898 * 110.99868 * 95.19076 * 8 7 6 32 32 H 1.09000 * 110.69570 * 263.03453 * 10 9 2 33 33 H 1.09004 * 110.84569 * 139.89773 * 10 9 2 34 34 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 1 1.6460 1.9901 0.8534 5 6 1.6776 2.1523 -1.3269 6 6 2.7479 3.2660 -1.4269 7 6 3.9104 2.7904 -0.5360 8 7 3.5290 1.4680 0.0057 9 8 2.0118 -0.6832 -1.1647 10 6 2.7885 -1.8097 -0.7102 11 6 2.2653 -2.0381 0.7300 12 1 1.3461 -2.6240 0.7228 13 6 3.3150 -2.6969 1.5872 14 1 4.2610 -2.9877 1.1548 15 6 3.0678 -2.9284 2.9238 16 7 1.9157 -2.5747 3.4503 17 14 4.3693 -3.7443 3.9867 18 1 5.5998 -2.9129 3.9882 19 1 4.6816 -5.0898 3.4414 20 1 3.8614 -3.8783 5.3757 21 8 2.0122 -0.6823 1.1704 22 1 -0.3633 -1.0277 -0.0055 23 1 -0.3633 0.5090 0.8927 24 1 -0.3633 0.5185 -0.8872 25 1 1.7588 1.4644 -2.1684 26 1 0.6763 2.5796 -1.2717 27 1 2.3458 4.2077 -1.0536 28 1 3.0836 3.3807 -2.4576 29 1 4.0649 3.4956 0.2807 30 1 4.8222 2.7009 -1.1265 31 1 3.9064 0.7229 -0.5604 32 1 3.8509 -1.5661 -0.6999 33 1 2.6016 -2.6858 -1.3314 34 1 1.2400 -2.1507 2.8985 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258444857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:11 Heat of formation + Delta-G solvation = -98.181765 kcal Electronic energy + Delta-G solvation = -17009.876799 eV Core-core repulsion = 14328.217017 eV Total energy + Delta-G solvation = -2681.659782 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92935 -37.56859 -34.14401 -32.91016 -31.29979 -29.67621 -27.99991 -27.44511 -24.30601 -22.45979 -21.44712 -20.70332 -19.65679 -17.41782 -16.45918 -15.78226 -15.11990 -15.00371 -14.08682 -13.74925 -13.62337 -13.46608 -13.28592 -12.73599 -12.48231 -11.98178 -11.66923 -11.58602 -11.36311 -11.26772 -11.05047 -10.80234 -10.75133 -10.49643 -10.38058 -10.06773 -9.15213 -8.92336 -8.61293 -8.31799 -8.17068 -6.45226 -4.24618 3.42067 3.46384 3.63731 4.26368 4.49023 4.51774 4.67050 4.91971 5.07871 5.30444 5.41612 5.53779 5.56881 5.66509 5.74050 5.92590 5.95553 5.96678 6.01074 6.04987 6.10901 6.17403 6.28440 6.37683 6.47665 6.50798 6.72892 7.14409 7.16997 7.76031 7.94321 8.20548 8.36327 8.76045 9.57128 10.96243 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036613 B = 0.008569 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.572297 B = 3266.780556 C = 3525.860046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.247 3.753 3 C 0.079 3.921 4 H 0.093 0.907 5 C -0.147 4.147 6 C -0.150 4.150 7 C 0.040 3.960 8 N -0.653 5.653 9 O -0.399 6.399 10 C 0.031 3.969 11 C 0.167 3.833 12 H 0.030 0.970 13 C -0.605 4.605 14 H 0.061 0.939 15 C 0.035 3.965 16 N -0.885 5.885 17 Si 1.072 2.928 18 H -0.285 1.285 19 H -0.286 1.286 20 H -0.281 1.281 21 O -0.354 6.354 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.341 0.659 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 7.553 -8.707 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.169 3.831 3 C -0.032 4.032 4 H 0.111 0.889 5 C -0.187 4.187 6 C -0.190 4.190 7 C -0.090 4.090 8 N -0.281 5.281 9 O -0.321 6.321 10 C -0.045 4.045 11 C 0.112 3.888 12 H 0.048 0.952 13 C -0.642 4.642 14 H 0.079 0.921 15 C -0.174 4.174 16 N -0.519 5.519 17 Si 0.899 3.101 18 H -0.211 1.211 19 H -0.213 1.213 20 H -0.206 1.206 21 O -0.275 6.275 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.297 7.326 -6.440 9.759 hybrid contribution -0.591 0.444 -2.641 2.743 sum -0.294 7.770 -9.082 11.956 Atomic orbital electron populations 1.22315 0.95225 1.02846 1.01904 1.23107 0.91829 0.90160 0.78032 1.22970 0.88895 0.94494 0.96806 0.88904 1.23132 0.98741 0.97553 0.99251 1.22822 0.96965 0.98919 1.00251 1.22760 0.96942 0.92540 0.96735 1.62681 1.07590 1.03389 1.54471 1.88674 1.69853 1.42924 1.30676 1.24211 0.95532 0.87439 0.97289 1.21583 0.96024 0.81196 0.89973 0.95197 1.21718 1.02646 1.42566 0.97270 0.92129 1.25916 1.00070 0.95180 0.96266 1.70692 1.05540 1.35888 1.39787 0.83514 0.74648 0.75851 0.76051 1.21130 1.21287 1.20624 1.89646 1.84642 1.24628 1.28611 0.91983 0.91189 0.92072 0.90502 0.91264 0.91651 0.91838 0.90999 0.92088 0.84176 0.91627 0.90392 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.05 37.15 0.34 -2.62 16 2 C 0.25 5.07 0.83 -26.74 -0.02 5.05 16 3 C 0.08 1.43 2.88 -65.79 -0.19 1.24 16 4 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 5 C -0.15 -2.15 5.64 -24.77 -0.14 -2.29 16 6 C -0.15 -1.91 6.93 -25.28 -0.18 -2.08 16 7 C 0.04 0.58 7.52 -2.75 -0.02 0.56 16 8 N -0.65 -12.11 7.23 -103.18 -0.75 -12.85 16 9 O -0.40 -8.13 9.16 -59.03 -0.54 -8.67 16 10 C 0.03 0.68 7.19 38.17 0.27 0.95 16 11 C 0.17 4.28 2.77 -26.87 -0.07 4.21 16 12 H 0.03 0.81 8.01 -51.93 -0.42 0.40 16 13 C -0.61 -17.03 8.84 -34.44 -0.30 -17.33 16 14 H 0.06 1.66 7.78 -52.49 -0.41 1.25 16 15 C 0.03 0.99 5.44 -17.82 -0.10 0.89 16 16 N -0.89 -26.99 13.60 55.43 0.75 -26.24 16 17 Si 1.07 25.07 29.90 -169.99 -5.08 19.99 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 O -0.35 -9.08 9.76 -59.03 -0.58 -9.65 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.06 0.93 7.42 -51.93 -0.39 0.55 16 25 H 0.08 1.19 7.19 -51.93 -0.37 0.82 16 26 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.34 6.57 7.37 -39.29 -0.29 6.28 16 32 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.28 8.55 6.71 -40.82 -0.27 8.27 16 LS Contribution 273.41 15.07 4.12 4.12 Total: -1.00 -30.70 273.41 -7.63 -38.32 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.14 Total: 6.41 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.41 Total: -11.42 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.01 Total: -39.09 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -1.12 Total: -18.32 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.70 -7.63 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258444857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.860 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds