Wall clock time and date at job start Mon Mar 30 2020 03:29:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52995 * 109.62982 * 2 1
4 4 H 1.08999 * 110.59543 * 56.76198 * 3 2 1
5 5 C 1.54942 * 110.66888 * 293.75597 * 3 2 1
6 6 C 1.54779 * 102.83483 * 204.27923 * 5 3 2
7 7 C 1.53992 * 105.21587 * 21.72861 * 6 5 3
8 8 N 1.47905 * 107.05493 * 1.36264 * 7 6 5
9 9 O 1.43372 * 109.63715 * 239.60471 * 2 1 3
10 10 C 1.44189 * 107.29225 * 240.79204 * 9 2 1
11 11 C 1.54918 * 103.07819 * 21.43265 * 10 9 2
12 12 H 1.09003 * 110.97588 * 82.58094 * 11 10 9
13 13 C 1.50695 * 110.97717 * 206.33029 * 11 10 9
14 14 H 1.07995 * 120.00496 * 356.89013 * 13 11 10
15 15 C 1.37880 * 119.99572 * 176.88947 * 13 11 10
16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11
17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11
18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13
19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13
20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13
21 21 O 1.43801 * 109.59515 * 120.24116 * 2 1 3
22 22 H 1.09000 * 109.46979 * 179.69388 * 1 2 3
23 23 H 1.09000 * 109.47151 * 299.69187 * 1 2 3
24 24 H 1.08995 * 109.46896 * 59.69718 * 1 2 3
25 25 H 1.08999 * 110.72077 * 322.50557 * 5 3 2
26 26 H 1.09001 * 110.72011 * 85.78838 * 5 3 2
27 27 H 1.08992 * 110.15181 * 262.84227 * 6 5 3
28 28 H 1.09010 * 110.47410 * 140.76693 * 6 5 3
29 29 H 1.09000 * 109.91466 * 242.01791 * 7 6 5
30 30 H 1.08992 * 110.08946 * 120.81414 * 7 6 5
31 31 H 1.00898 * 110.99868 * 95.19076 * 8 7 6
32 32 H 1.09000 * 110.69570 * 263.03453 * 10 9 2
33 33 H 1.09004 * 110.84569 * 139.89773 * 10 9 2
34 34 H 0.97006 * 119.99995 * 359.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0439 1.4410 0.0000
4 1 1.6460 1.9901 0.8534
5 6 1.6776 2.1523 -1.3269
6 6 2.7479 3.2660 -1.4269
7 6 3.9104 2.7904 -0.5360
8 7 3.5290 1.4680 0.0057
9 8 2.0118 -0.6832 -1.1647
10 6 2.7885 -1.8097 -0.7102
11 6 2.2653 -2.0381 0.7300
12 1 1.3461 -2.6240 0.7228
13 6 3.3150 -2.6969 1.5872
14 1 4.2610 -2.9877 1.1548
15 6 3.0678 -2.9284 2.9238
16 7 1.9157 -2.5747 3.4503
17 14 4.3693 -3.7443 3.9867
18 1 5.5998 -2.9129 3.9882
19 1 4.6816 -5.0898 3.4414
20 1 3.8614 -3.8783 5.3757
21 8 2.0122 -0.6823 1.1704
22 1 -0.3633 -1.0277 -0.0055
23 1 -0.3633 0.5090 0.8927
24 1 -0.3633 0.5185 -0.8872
25 1 1.7588 1.4644 -2.1684
26 1 0.6763 2.5796 -1.2717
27 1 2.3458 4.2077 -1.0536
28 1 3.0836 3.3807 -2.4576
29 1 4.0649 3.4956 0.2807
30 1 4.8222 2.7009 -1.1265
31 1 3.9064 0.7229 -0.5604
32 1 3.8509 -1.5661 -0.6999
33 1 2.6016 -2.6858 -1.3314
34 1 1.2400 -2.1507 2.8985
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000258444857.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:11
Heat of formation + Delta-G solvation = -120.289112 kcal
Electronic energy + Delta-G solvation = -17010.835445 eV
Core-core repulsion = 14328.217017 eV
Total energy + Delta-G solvation = -2682.618429 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.57707 -38.94599 -36.01298 -34.86467 -32.97527 -30.90496 -29.81270 -28.78997
-26.34000 -23.93510 -23.33936 -21.92293 -21.07703 -19.38930 -18.19221 -17.41412
-16.69154 -16.27281 -15.87152 -15.63527 -15.13660 -14.98488 -14.64201 -14.26775
-14.14678 -13.73110 -13.44313 -13.05736 -12.93424 -12.60476 -12.55286 -12.39460
-12.26281 -12.07421 -11.91341 -11.47045 -11.02231 -10.76534 -10.66166 -10.26284
-9.51061 -8.71745 -6.51363 1.53839 1.62717 1.81546 2.51655 2.65047
2.99936 3.19095 3.35696 3.76327 3.86173 4.04278 4.06783 4.12089
4.21602 4.30305 4.40250 4.46540 4.50509 4.63821 4.73189 4.78111
4.90652 4.97340 5.01320 5.05734 5.13085 5.21288 5.31636 5.84410
5.89560 6.04356 6.36071 6.43843 6.52994 7.39713 8.69274
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.036613 B = 0.008569 C = 0.007939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 764.572297 B = 3266.780556 C = 3525.860046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.236 3.764
3 C 0.076 3.924
4 H 0.084 0.916
5 C -0.138 4.138
6 C -0.141 4.141
7 C 0.037 3.963
8 N -0.682 5.682
9 O -0.391 6.391
10 C 0.043 3.957
11 C 0.161 3.839
12 H 0.006 0.994
13 C -0.620 4.620
14 H 0.064 0.936
15 C -0.018 4.018
16 N -0.915 5.915
17 Si 1.120 2.880
18 H -0.273 1.273
19 H -0.261 1.261
20 H -0.284 1.284
21 O -0.386 6.386
22 H 0.046 0.954
23 H 0.072 0.928
24 H 0.092 0.908
25 H 0.069 0.931
26 H 0.089 0.911
27 H 0.082 0.918
28 H 0.082 0.918
29 H 0.073 0.927
30 H 0.075 0.925
31 H 0.333 0.667
32 H 0.067 0.933
33 H 0.099 0.901
34 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.557 8.542 -9.966 13.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.159 3.841
3 C -0.034 4.034
4 H 0.102 0.898
5 C -0.177 4.177
6 C -0.179 4.179
7 C -0.092 4.092
8 N -0.310 5.310
9 O -0.313 6.313
10 C -0.033 4.033
11 C 0.105 3.895
12 H 0.023 0.977
13 C -0.657 4.657
14 H 0.082 0.918
15 C -0.219 4.219
16 N -0.550 5.550
17 Si 0.940 3.060
18 H -0.199 1.199
19 H -0.186 1.186
20 H -0.209 1.209
21 O -0.307 6.307
22 H 0.065 0.935
23 H 0.091 0.909
24 H 0.111 0.889
25 H 0.088 0.912
26 H 0.107 0.893
27 H 0.101 0.899
28 H 0.101 0.899
29 H 0.092 0.908
30 H 0.093 0.907
31 H 0.149 0.851
32 H 0.085 0.915
33 H 0.117 0.883
34 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 0.962 8.332 -7.733 11.408
hybrid contribution -0.821 0.192 -2.301 2.451
sum 0.142 8.524 -10.034 13.167
Atomic orbital electron populations
1.22295 0.93505 1.02464 1.03613 1.23536 0.93215 0.91007 0.76369
1.22949 0.89028 0.92845 0.98585 0.89841 1.23070 1.00515 0.97653
0.96472 1.22779 0.95415 0.98727 1.01025 1.22866 0.98362 0.90621
0.97393 1.62677 1.07856 1.04988 1.55457 1.88657 1.69781 1.42486
1.30357 1.24060 0.95520 0.88570 0.95126 1.21442 0.94634 0.81251
0.92123 0.97661 1.22122 1.03160 1.42603 0.97829 0.91758 1.27447
1.01091 0.95169 0.98239 1.70823 1.06450 1.37972 1.39727 0.82927
0.72455 0.76325 0.74292 1.19866 1.18592 1.20920 1.89558 1.85337
1.24475 1.31324 0.93453 0.90874 0.88887 0.91243 0.89276 0.89882
0.89933 0.90824 0.90675 0.85081 0.91528 0.88261 0.92827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.67 9.05 71.98 0.65 -5.01 16
2 C 0.24 9.62 0.83 30.59 0.03 9.64 16
3 C 0.08 2.68 2.88 45.26 0.13 2.81 16
4 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16
5 C -0.14 -3.62 5.64 31.87 0.18 -3.44 16
6 C -0.14 -3.08 6.93 31.54 0.22 -2.86 16
7 C 0.04 0.98 7.52 86.44 0.65 1.63 16
8 N -0.68 -24.67 7.23 -480.36 -3.47 -28.14 16
9 O -0.39 -15.56 9.16 -126.22 -1.16 -16.71 16
10 C 0.04 1.85 7.19 72.64 0.52 2.38 16
11 C 0.16 8.42 2.77 30.50 0.08 8.51 16
12 H 0.01 0.33 8.01 -2.39 -0.02 0.31 16
13 C -0.62 -35.36 8.84 25.60 0.23 -35.13 16
14 H 0.06 3.51 7.78 -2.91 -0.02 3.49 16
15 C -0.02 -1.03 5.44 84.66 0.46 -0.57 16
16 N -0.91 -57.28 13.60 21.45 0.29 -56.99 16
17 Si 1.12 50.37 29.90 68.60 2.05 52.42 16
18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
19 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16
20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
21 O -0.39 -20.20 9.76 -126.22 -1.23 -21.44 16
22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
23 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16
24 H 0.09 2.64 7.42 -2.39 -0.02 2.62 16
25 H 0.07 1.95 7.19 -2.39 -0.02 1.93 16
26 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16
27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16
29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
31 H 0.33 12.62 7.37 -89.70 -0.66 11.96 16
32 H 0.07 2.82 7.70 -2.39 -0.02 2.80 16
33 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16
34 H 0.26 16.81 6.71 -92.70 -0.62 16.19 16
Total: -1.00 -67.08 273.41 0.20 -66.88
By element:
Atomic # 1 Polarization: 25.47 SS G_CDS: 0.57 Total: 26.03 kcal
Atomic # 6 Polarization: -25.20 SS G_CDS: 3.15 Total: -22.05 kcal
Atomic # 7 Polarization: -81.95 SS G_CDS: -3.18 Total: -85.13 kcal
Atomic # 8 Polarization: -35.76 SS G_CDS: -2.39 Total: -38.15 kcal
Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal
Total: -67.08 0.20 -66.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258444857.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.412 kcal
(2) G-P(sol) polarization free energy of solvation -67.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.489 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds