Wall clock time and date at job start Mon Mar 30 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.62982 * 2 1 4 4 H 1.08999 * 110.59543 * 56.76198 * 3 2 1 5 5 C 1.54942 * 110.66888 * 293.75597 * 3 2 1 6 6 C 1.54779 * 102.83483 * 204.27923 * 5 3 2 7 7 C 1.53992 * 105.21587 * 21.72861 * 6 5 3 8 8 N 1.47905 * 107.05493 * 1.36264 * 7 6 5 9 9 O 1.43372 * 109.63715 * 239.60471 * 2 1 3 10 10 C 1.44189 * 107.29225 * 240.79204 * 9 2 1 11 11 C 1.54918 * 103.07819 * 21.43265 * 10 9 2 12 12 H 1.09003 * 110.97588 * 82.58094 * 11 10 9 13 13 C 1.50695 * 110.97717 * 206.33029 * 11 10 9 14 14 H 1.07995 * 120.00496 * 356.89013 * 13 11 10 15 15 C 1.37880 * 119.99572 * 176.88947 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 O 1.43801 * 109.59515 * 120.24116 * 2 1 3 22 22 H 1.09000 * 109.46979 * 179.69388 * 1 2 3 23 23 H 1.09000 * 109.47151 * 299.69187 * 1 2 3 24 24 H 1.08995 * 109.46896 * 59.69718 * 1 2 3 25 25 H 1.08999 * 110.72077 * 322.50557 * 5 3 2 26 26 H 1.09001 * 110.72011 * 85.78838 * 5 3 2 27 27 H 1.08992 * 110.15181 * 262.84227 * 6 5 3 28 28 H 1.09010 * 110.47410 * 140.76693 * 6 5 3 29 29 H 1.09000 * 109.91466 * 242.01791 * 7 6 5 30 30 H 1.08992 * 110.08946 * 120.81414 * 7 6 5 31 31 H 1.00898 * 110.99868 * 95.19076 * 8 7 6 32 32 H 1.09000 * 110.69570 * 263.03453 * 10 9 2 33 33 H 1.09004 * 110.84569 * 139.89773 * 10 9 2 34 34 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 1 1.6460 1.9901 0.8534 5 6 1.6776 2.1523 -1.3269 6 6 2.7479 3.2660 -1.4269 7 6 3.9104 2.7904 -0.5360 8 7 3.5290 1.4680 0.0057 9 8 2.0118 -0.6832 -1.1647 10 6 2.7885 -1.8097 -0.7102 11 6 2.2653 -2.0381 0.7300 12 1 1.3461 -2.6240 0.7228 13 6 3.3150 -2.6969 1.5872 14 1 4.2610 -2.9877 1.1548 15 6 3.0678 -2.9284 2.9238 16 7 1.9157 -2.5747 3.4503 17 14 4.3693 -3.7443 3.9867 18 1 5.5998 -2.9129 3.9882 19 1 4.6816 -5.0898 3.4414 20 1 3.8614 -3.8783 5.3757 21 8 2.0122 -0.6823 1.1704 22 1 -0.3633 -1.0277 -0.0055 23 1 -0.3633 0.5090 0.8927 24 1 -0.3633 0.5185 -0.8872 25 1 1.7588 1.4644 -2.1684 26 1 0.6763 2.5796 -1.2717 27 1 2.3458 4.2077 -1.0536 28 1 3.0836 3.3807 -2.4576 29 1 4.0649 3.4956 0.2807 30 1 4.8222 2.7009 -1.1265 31 1 3.9064 0.7229 -0.5604 32 1 3.8509 -1.5661 -0.6999 33 1 2.6016 -2.6858 -1.3314 34 1 1.2400 -2.1507 2.8985 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258444857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:11 Heat of formation + Delta-G solvation = -120.289112 kcal Electronic energy + Delta-G solvation = -17010.835445 eV Core-core repulsion = 14328.217017 eV Total energy + Delta-G solvation = -2682.618429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57707 -38.94599 -36.01298 -34.86467 -32.97527 -30.90496 -29.81270 -28.78997 -26.34000 -23.93510 -23.33936 -21.92293 -21.07703 -19.38930 -18.19221 -17.41412 -16.69154 -16.27281 -15.87152 -15.63527 -15.13660 -14.98488 -14.64201 -14.26775 -14.14678 -13.73110 -13.44313 -13.05736 -12.93424 -12.60476 -12.55286 -12.39460 -12.26281 -12.07421 -11.91341 -11.47045 -11.02231 -10.76534 -10.66166 -10.26284 -9.51061 -8.71745 -6.51363 1.53839 1.62717 1.81546 2.51655 2.65047 2.99936 3.19095 3.35696 3.76327 3.86173 4.04278 4.06783 4.12089 4.21602 4.30305 4.40250 4.46540 4.50509 4.63821 4.73189 4.78111 4.90652 4.97340 5.01320 5.05734 5.13085 5.21288 5.31636 5.84410 5.89560 6.04356 6.36071 6.43843 6.52994 7.39713 8.69274 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036613 B = 0.008569 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.572297 B = 3266.780556 C = 3525.860046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 C 0.076 3.924 4 H 0.084 0.916 5 C -0.138 4.138 6 C -0.141 4.141 7 C 0.037 3.963 8 N -0.682 5.682 9 O -0.391 6.391 10 C 0.043 3.957 11 C 0.161 3.839 12 H 0.006 0.994 13 C -0.620 4.620 14 H 0.064 0.936 15 C -0.018 4.018 16 N -0.915 5.915 17 Si 1.120 2.880 18 H -0.273 1.273 19 H -0.261 1.261 20 H -0.284 1.284 21 O -0.386 6.386 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.333 0.667 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 8.542 -9.966 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.159 3.841 3 C -0.034 4.034 4 H 0.102 0.898 5 C -0.177 4.177 6 C -0.179 4.179 7 C -0.092 4.092 8 N -0.310 5.310 9 O -0.313 6.313 10 C -0.033 4.033 11 C 0.105 3.895 12 H 0.023 0.977 13 C -0.657 4.657 14 H 0.082 0.918 15 C -0.219 4.219 16 N -0.550 5.550 17 Si 0.940 3.060 18 H -0.199 1.199 19 H -0.186 1.186 20 H -0.209 1.209 21 O -0.307 6.307 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.962 8.332 -7.733 11.408 hybrid contribution -0.821 0.192 -2.301 2.451 sum 0.142 8.524 -10.034 13.167 Atomic orbital electron populations 1.22295 0.93505 1.02464 1.03613 1.23536 0.93215 0.91007 0.76369 1.22949 0.89028 0.92845 0.98585 0.89841 1.23070 1.00515 0.97653 0.96472 1.22779 0.95415 0.98727 1.01025 1.22866 0.98362 0.90621 0.97393 1.62677 1.07856 1.04988 1.55457 1.88657 1.69781 1.42486 1.30357 1.24060 0.95520 0.88570 0.95126 1.21442 0.94634 0.81251 0.92123 0.97661 1.22122 1.03160 1.42603 0.97829 0.91758 1.27447 1.01091 0.95169 0.98239 1.70823 1.06450 1.37972 1.39727 0.82927 0.72455 0.76325 0.74292 1.19866 1.18592 1.20920 1.89558 1.85337 1.24475 1.31324 0.93453 0.90874 0.88887 0.91243 0.89276 0.89882 0.89933 0.90824 0.90675 0.85081 0.91528 0.88261 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 9.05 71.98 0.65 -5.01 16 2 C 0.24 9.62 0.83 30.59 0.03 9.64 16 3 C 0.08 2.68 2.88 45.26 0.13 2.81 16 4 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 5 C -0.14 -3.62 5.64 31.87 0.18 -3.44 16 6 C -0.14 -3.08 6.93 31.54 0.22 -2.86 16 7 C 0.04 0.98 7.52 86.44 0.65 1.63 16 8 N -0.68 -24.67 7.23 -480.36 -3.47 -28.14 16 9 O -0.39 -15.56 9.16 -126.22 -1.16 -16.71 16 10 C 0.04 1.85 7.19 72.64 0.52 2.38 16 11 C 0.16 8.42 2.77 30.50 0.08 8.51 16 12 H 0.01 0.33 8.01 -2.39 -0.02 0.31 16 13 C -0.62 -35.36 8.84 25.60 0.23 -35.13 16 14 H 0.06 3.51 7.78 -2.91 -0.02 3.49 16 15 C -0.02 -1.03 5.44 84.66 0.46 -0.57 16 16 N -0.91 -57.28 13.60 21.45 0.29 -56.99 16 17 Si 1.12 50.37 29.90 68.60 2.05 52.42 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 O -0.39 -20.20 9.76 -126.22 -1.23 -21.44 16 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.09 2.64 7.42 -2.39 -0.02 2.62 16 25 H 0.07 1.95 7.19 -2.39 -0.02 1.93 16 26 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.33 12.62 7.37 -89.70 -0.66 11.96 16 32 H 0.07 2.82 7.70 -2.39 -0.02 2.80 16 33 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 34 H 0.26 16.81 6.71 -92.70 -0.62 16.19 16 Total: -1.00 -67.08 273.41 0.20 -66.88 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.57 Total: 26.03 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.15 Total: -22.05 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -3.18 Total: -85.13 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -2.39 Total: -38.15 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal Total: -67.08 0.20 -66.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258444857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.412 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds