Wall clock time and date at job start Mon Mar 30 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47370 * 239.99784 * 3 2 1 5 5 H 1.48498 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47277 * 119.99689 * 3 2 1 7 7 C 1.37885 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99797 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.61830 * 56.92189 * 9 7 2 11 11 C 1.54914 * 110.69195 * 179.97438 * 9 7 2 12 12 O 1.44793 * 101.71676 * 153.96070 * 11 9 7 13 13 C 1.43752 * 104.81551 * 323.89634 * 12 11 9 14 14 H 1.09001 * 109.62697 * 264.58797 * 13 12 11 15 15 C 1.52996 * 109.62929 * 144.19293 * 13 12 11 16 16 C 1.53118 * 109.52328 * 61.45509 * 15 13 12 17 17 C 1.53034 * 109.28068 * 177.55504 * 16 15 13 18 18 N 1.46848 * 109.52504 * 300.82023 * 17 16 15 19 19 C 1.46847 * 111.19556 * 61.74015 * 18 17 16 20 20 C 1.53044 * 109.52516 * 298.25761 * 19 18 17 21 21 O 1.43364 * 108.79226 * 24.31388 * 13 12 11 22 22 H 0.96997 * 119.99540 * 0.02562 * 1 2 3 23 23 H 1.08997 * 110.98270 * 35.85286 * 11 9 7 24 24 H 1.09003 * 110.97636 * 272.06167 * 11 9 7 25 25 H 1.08992 * 109.52755 * 301.32691 * 15 13 12 26 26 H 1.09001 * 109.50624 * 57.61525 * 16 15 13 27 27 H 1.08998 * 109.50047 * 297.49982 * 16 15 13 28 28 H 1.09000 * 109.46341 * 180.80474 * 17 16 15 29 29 H 1.09003 * 109.45147 * 60.83100 * 17 16 15 30 30 H 1.00901 * 111.00066 * 185.83397 * 18 17 16 31 31 H 1.08999 * 109.46628 * 58.27319 * 19 18 17 32 32 H 1.09003 * 109.46158 * 178.24166 * 19 18 17 33 33 H 1.08996 * 109.50067 * 299.23984 * 20 19 18 34 34 H 1.08993 * 109.50192 * 179.12052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5772 -2.5534 -0.8546 11 6 2.2324 -3.6979 0.0005 12 8 1.4330 -4.7323 0.6229 13 6 0.6532 -4.0463 1.6168 14 1 1.1523 -4.1124 2.5836 15 6 -0.7350 -4.6827 1.7103 16 6 -0.5990 -6.1469 2.1369 17 6 -1.9927 -6.7608 2.2878 18 7 -2.7542 -6.0083 3.2929 19 6 -2.9384 -4.6104 2.8824 20 6 -1.5729 -3.9323 2.7493 21 8 0.5274 -2.6699 1.2360 22 1 -0.4849 0.8401 -0.0004 23 1 3.1178 -3.4773 0.5966 24 1 2.5079 -3.9766 -1.0166 25 1 -1.2259 -4.6305 0.7386 26 1 -0.0725 -6.2010 3.0897 27 1 -0.0395 -6.6960 1.3796 28 1 -1.8996 -7.7994 2.6053 29 1 -2.5134 -6.7188 1.3311 30 1 -3.6419 -6.4502 3.4795 31 1 -3.4547 -4.5785 1.9230 32 1 -3.5322 -4.0871 3.6318 33 1 -1.0617 -3.9515 3.7118 34 1 -1.7092 -2.8993 2.4295 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258818505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:56 Heat of formation + Delta-G solvation = -102.797312 kcal Electronic energy + Delta-G solvation = -16530.101966 eV Core-core repulsion = 13848.242039 eV Total energy + Delta-G solvation = -2681.859927 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42047 -37.79706 -33.87353 -32.93821 -32.04723 -30.48331 -28.83427 -25.28793 -24.32815 -22.69162 -21.29179 -20.96006 -19.37671 -16.83591 -16.58908 -15.70498 -15.41203 -14.75514 -14.41313 -14.37975 -13.88338 -13.29876 -12.85038 -12.76868 -12.40623 -12.17612 -11.90330 -11.80163 -11.30339 -10.94228 -10.91052 -10.73732 -10.58846 -10.23913 -10.10628 -9.97532 -9.35219 -9.01182 -8.66349 -8.37218 -8.08071 -6.12583 -4.27868 3.27122 3.31964 3.34097 4.32823 4.34833 4.51499 4.89836 5.12391 5.20757 5.32488 5.47199 5.53203 5.72797 5.78200 5.84534 5.98938 6.04526 6.09386 6.12349 6.25960 6.28528 6.36689 6.37519 6.57208 6.72914 6.73774 6.94681 7.17053 7.43173 7.46658 7.76504 8.10874 8.47759 8.83907 9.44297 10.95052 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.041274 B = 0.007308 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.237402 B = 3830.683530 C = 4349.975535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.080 3.920 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.187 3.813 10 H 0.043 0.957 11 C 0.020 3.980 12 O -0.402 6.402 13 C 0.231 3.769 14 H 0.058 0.942 15 C -0.095 4.095 16 C -0.107 4.107 17 C 0.060 3.940 18 N -0.692 5.692 19 C 0.060 3.940 20 C -0.104 4.104 21 O -0.365 6.365 22 H 0.264 0.736 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.336 0.664 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -9.417 3.538 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.132 3.868 10 H 0.060 0.940 11 C -0.056 4.056 12 O -0.323 6.323 13 C 0.135 3.865 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.145 4.145 17 C -0.069 4.069 18 N -0.323 5.323 19 C -0.069 4.069 20 C -0.142 4.142 21 O -0.286 6.286 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.153 0.847 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.304 -9.231 3.978 10.580 hybrid contribution -0.145 0.814 -0.726 1.101 sum -3.449 -8.416 3.251 9.659 Atomic orbital electron populations 1.70014 1.06134 1.27071 1.46522 1.25075 0.94834 0.99515 0.93282 0.86587 0.79658 0.82494 0.78830 1.19948 1.21051 1.19943 1.20958 0.92774 0.89709 1.54317 0.91627 1.21266 0.88330 0.92815 0.84367 0.93973 1.24521 0.95637 0.87956 0.97466 1.89010 1.56801 1.32934 1.53545 1.23788 0.89756 0.81783 0.91161 0.92494 1.21535 0.95937 0.94370 0.99529 1.21530 0.95772 0.95554 1.01672 1.21914 0.95007 0.96985 0.93040 1.60328 1.23228 1.03002 1.45723 1.21944 0.97760 0.88688 0.98548 1.21463 0.94091 0.99811 0.98870 1.89206 1.75461 1.21006 1.42973 0.92613 0.92048 0.89483 0.91121 0.91503 0.91145 0.91199 0.95444 0.84722 0.95328 0.90988 0.91623 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.15 55.43 0.73 -24.48 16 2 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.98 8.81 -34.44 -0.30 -15.28 16 8 H 0.07 1.74 7.76 -52.49 -0.41 1.33 16 9 C 0.19 4.89 3.43 -26.87 -0.09 4.79 16 10 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 11 C 0.02 0.44 7.37 38.17 0.28 0.72 16 12 O -0.40 -8.64 10.80 -59.04 -0.64 -9.28 16 13 C 0.23 4.99 3.50 37.16 0.13 5.12 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.09 -1.75 2.28 -90.50 -0.21 -1.95 16 16 C -0.11 -1.66 5.21 -26.65 -0.14 -1.80 16 17 C 0.06 0.78 6.55 -3.83 -0.03 0.76 16 18 N -0.69 -9.00 6.85 -113.81 -0.78 -9.78 16 19 C 0.06 0.85 6.55 -3.83 -0.03 0.83 16 20 C -0.10 -1.82 5.19 -26.65 -0.14 -1.96 16 21 O -0.37 -9.54 10.10 -59.04 -0.60 -10.14 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.06 1.30 8.02 -51.93 -0.42 0.89 16 24 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.09 7.81 -51.93 -0.41 0.69 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.34 3.52 8.90 -39.29 -0.35 3.17 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.64 7.76 -51.93 -0.40 1.24 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -29.88 276.06 -8.10 -37.98 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.34 Total: 2.18 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.62 Total: -6.64 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.05 Total: -34.26 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.23 Total: -19.42 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.88 -8.10 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258818505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.813 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds