Wall clock time and date at job start Mon Mar 30 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47370 * 239.99784 * 3 2 1 5 5 H 1.48498 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47277 * 119.99689 * 3 2 1 7 7 C 1.37885 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99797 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.61830 * 56.92189 * 9 7 2 11 11 C 1.54914 * 110.69195 * 179.97438 * 9 7 2 12 12 O 1.44793 * 101.71676 * 153.96070 * 11 9 7 13 13 C 1.43752 * 104.81551 * 323.89634 * 12 11 9 14 14 H 1.09001 * 109.62697 * 264.58797 * 13 12 11 15 15 C 1.52996 * 109.62929 * 144.19293 * 13 12 11 16 16 C 1.53118 * 109.52328 * 61.45509 * 15 13 12 17 17 C 1.53034 * 109.28068 * 177.55504 * 16 15 13 18 18 N 1.46848 * 109.52504 * 300.82023 * 17 16 15 19 19 C 1.46847 * 111.19556 * 61.74015 * 18 17 16 20 20 C 1.53044 * 109.52516 * 298.25761 * 19 18 17 21 21 O 1.43364 * 108.79226 * 24.31388 * 13 12 11 22 22 H 0.96997 * 119.99540 * 0.02562 * 1 2 3 23 23 H 1.08997 * 110.98270 * 35.85286 * 11 9 7 24 24 H 1.09003 * 110.97636 * 272.06167 * 11 9 7 25 25 H 1.08992 * 109.52755 * 301.32691 * 15 13 12 26 26 H 1.09001 * 109.50624 * 57.61525 * 16 15 13 27 27 H 1.08998 * 109.50047 * 297.49982 * 16 15 13 28 28 H 1.09000 * 109.46341 * 180.80474 * 17 16 15 29 29 H 1.09003 * 109.45147 * 60.83100 * 17 16 15 30 30 H 1.00901 * 111.00066 * 185.83397 * 18 17 16 31 31 H 1.08999 * 109.46628 * 58.27319 * 19 18 17 32 32 H 1.09003 * 109.46158 * 178.24166 * 19 18 17 33 33 H 1.08996 * 109.50067 * 299.23984 * 20 19 18 34 34 H 1.08993 * 109.50192 * 179.12052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5772 -2.5534 -0.8546 11 6 2.2324 -3.6979 0.0005 12 8 1.4330 -4.7323 0.6229 13 6 0.6532 -4.0463 1.6168 14 1 1.1523 -4.1124 2.5836 15 6 -0.7350 -4.6827 1.7103 16 6 -0.5990 -6.1469 2.1369 17 6 -1.9927 -6.7608 2.2878 18 7 -2.7542 -6.0083 3.2929 19 6 -2.9384 -4.6104 2.8824 20 6 -1.5729 -3.9323 2.7493 21 8 0.5274 -2.6699 1.2360 22 1 -0.4849 0.8401 -0.0004 23 1 3.1178 -3.4773 0.5966 24 1 2.5079 -3.9766 -1.0166 25 1 -1.2259 -4.6305 0.7386 26 1 -0.0725 -6.2010 3.0897 27 1 -0.0395 -6.6960 1.3796 28 1 -1.8996 -7.7994 2.6053 29 1 -2.5134 -6.7188 1.3311 30 1 -3.6419 -6.4502 3.4795 31 1 -3.4547 -4.5785 1.9230 32 1 -3.5322 -4.0871 3.6318 33 1 -1.0617 -3.9515 3.7118 34 1 -1.7092 -2.8993 2.4295 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258818505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:56 Heat of formation + Delta-G solvation = -124.304040 kcal Electronic energy + Delta-G solvation = -16531.034568 eV Core-core repulsion = 13848.242039 eV Total energy + Delta-G solvation = -2682.792529 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14958 -39.14808 -35.79600 -34.77819 -33.66035 -31.70575 -30.72011 -27.11255 -26.01694 -23.99609 -23.03062 -22.60800 -20.75222 -18.89719 -17.94448 -17.39349 -17.26161 -16.51589 -16.16192 -15.55644 -15.36186 -14.79859 -14.58899 -14.20458 -14.08837 -13.86762 -13.59426 -13.19605 -13.06828 -12.76925 -12.43319 -12.42839 -12.15913 -12.04508 -11.57409 -11.30794 -11.23543 -10.87235 -10.70562 -10.03314 -9.41975 -8.23861 -6.47494 1.40939 1.44093 1.51974 2.36570 2.75452 3.03421 3.29989 3.49417 3.82969 3.91687 4.00650 4.20037 4.27458 4.28509 4.45440 4.48535 4.51419 4.61209 4.68840 4.74372 4.85919 4.91608 4.98425 5.02766 5.21062 5.28265 5.40149 5.43736 5.62639 6.02627 6.03342 6.50378 6.55669 6.78855 7.29680 8.84648 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.041274 B = 0.007308 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.237402 B = 3830.683530 C = 4349.975535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.178 3.822 10 H 0.009 0.991 11 C 0.031 3.969 12 O -0.398 6.398 13 C 0.224 3.776 14 H 0.064 0.936 15 C -0.090 4.090 16 C -0.101 4.101 17 C 0.063 3.937 18 N -0.691 5.691 19 C 0.067 3.933 20 C -0.101 4.101 21 O -0.394 6.394 22 H 0.265 0.735 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.027 0.973 30 H 0.355 0.645 31 H 0.025 0.975 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -10.298 4.220 11.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.093 0.907 9 C 0.123 3.877 10 H 0.027 0.973 11 C -0.045 4.045 12 O -0.319 6.319 13 C 0.128 3.872 14 H 0.081 0.919 15 C -0.109 4.109 16 C -0.138 4.138 17 C -0.067 4.067 18 N -0.324 5.324 19 C -0.063 4.063 20 C -0.139 4.139 21 O -0.316 6.316 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.130 0.870 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.046 0.954 30 H 0.175 0.825 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.917 -10.140 4.661 11.535 hybrid contribution -0.270 1.036 -0.927 1.416 sum -3.187 -9.104 3.734 10.344 Atomic orbital electron populations 1.70160 1.07917 1.28023 1.47728 1.26025 0.95685 1.03485 0.92679 0.85441 0.78287 0.77530 0.79345 1.18478 1.20757 1.19372 1.21373 0.93429 0.90734 1.54273 0.90734 1.21177 0.88633 0.94467 0.83449 0.97339 1.24448 0.94688 0.86227 0.99157 1.89001 1.56848 1.32590 1.53497 1.24085 0.91669 0.80289 0.91119 0.91882 1.21495 0.93861 0.96609 0.98939 1.21483 0.97732 0.93079 1.01554 1.21916 0.93282 0.98111 0.93341 1.60262 1.24534 1.02219 1.45387 1.21822 0.95608 0.89692 0.99131 1.21381 0.96057 0.98215 0.98215 1.89140 1.75831 1.23845 1.42808 0.92586 0.91125 0.86977 0.93237 0.91252 0.91164 0.88360 0.95448 0.82509 0.95654 0.89222 0.91575 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.22 13.15 21.45 0.28 -53.94 16 2 C 0.02 1.36 5.45 84.66 0.46 1.82 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.56 -31.47 8.81 25.60 0.23 -31.24 16 8 H 0.07 3.93 7.76 -2.91 -0.02 3.90 16 9 C 0.18 9.54 3.43 30.50 0.10 9.65 16 10 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 11 C 0.03 1.33 7.37 72.64 0.54 1.87 16 12 O -0.40 -16.97 10.80 -126.22 -1.36 -18.34 16 13 C 0.22 9.77 3.50 71.98 0.25 10.02 16 14 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 15 C -0.09 -3.34 2.28 -10.72 -0.02 -3.36 16 16 C -0.10 -2.96 5.21 30.65 0.16 -2.80 16 17 C 0.06 1.48 6.55 86.32 0.57 2.04 16 18 N -0.69 -16.13 6.85 -513.99 -3.52 -19.65 16 19 C 0.07 1.82 6.55 86.33 0.57 2.39 16 20 C -0.10 -3.54 5.19 30.65 0.16 -3.38 16 21 O -0.39 -21.31 10.10 -126.22 -1.27 -22.59 16 22 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 23 H 0.07 2.92 8.02 -2.39 -0.02 2.91 16 24 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 2.07 7.81 -2.39 -0.02 2.05 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.36 6.26 8.90 -89.69 -0.80 5.46 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 2.02 7.76 -2.39 -0.02 2.00 16 Total: -1.00 -65.04 276.06 -0.57 -65.60 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.28 Total: 16.62 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.00 Total: -12.99 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -3.24 Total: -73.59 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -2.64 Total: -40.92 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.04 -0.57 -65.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258818505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.700 kcal (2) G-P(sol) polarization free energy of solvation -65.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds