Wall clock time and date at job start Mon Mar 30 2020 03:18:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86796 * 120.00075 * 2 1
4 4 H 1.48494 * 109.47393 * 269.99888 * 3 2 1
5 5 H 1.48498 * 109.47173 * 30.00433 * 3 2 1
6 6 H 1.48504 * 109.47142 * 149.99854 * 3 2 1
7 7 C 1.37883 * 120.00039 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99852 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00159 * 179.97438 * 7 2 1
10 10 H 1.08997 * 110.64787 * 298.29158 * 9 7 2
11 11 C 1.54454 * 110.88272 * 175.01885 * 9 7 2
12 12 O 1.43892 * 105.07918 * 219.78373 * 11 9 7
13 13 C 1.43774 * 107.10770 * 358.28745 * 12 11 9
14 14 H 1.09001 * 110.11559 * 265.90862 * 13 12 11
15 15 C 1.53000 * 110.11432 * 144.26436 * 13 12 11
16 16 C 1.53001 * 109.46998 * 68.25769 * 15 13 12
17 17 H 1.09000 * 110.64348 * 308.15624 * 16 15 13
18 18 C 1.54599 * 110.72650 * 185.00132 * 16 15 13
19 19 C 1.53990 * 105.14162 * 219.68417 * 18 16 15
20 20 N 1.47905 * 107.05854 * 358.77408 * 19 18 16
21 21 C 1.48530 * 105.82089 * 25.33108 * 20 19 18
22 22 O 1.44391 * 106.17240 * 25.09000 * 13 12 11
23 23 H 0.97002 * 120.00434 * 359.97438 * 1 2 3
24 24 H 1.09006 * 110.31671 * 338.67650 * 11 9 7
25 25 H 1.08990 * 110.32130 * 100.87840 * 11 9 7
26 26 H 1.08999 * 109.47603 * 188.25408 * 15 13 12
27 27 H 1.09000 * 109.47578 * 308.26142 * 15 13 12
28 28 H 1.09005 * 110.30812 * 338.60112 * 18 16 15
29 29 H 1.09000 * 110.30696 * 100.76598 * 18 16 15
30 30 H 1.09005 * 109.92059 * 118.12505 * 19 18 16
31 31 H 1.08997 * 109.92208 * 239.41961 * 19 18 16
32 32 H 1.00897 * 110.99927 * 264.82076 * 20 19 18
33 33 H 1.08996 * 110.67059 * 202.36148 * 21 20 19
34 34 H 1.08999 * 110.67006 * 79.22683 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 1 3.8955 -0.7105 -0.8993
11 6 4.0621 -2.6318 0.1236
12 8 5.1934 -2.5241 1.0062
13 6 5.3343 -1.1341 1.3455
14 1 6.0436 -0.6537 0.6714
15 6 5.8050 -0.9912 2.7943
16 6 7.2411 -1.5043 2.9170
17 1 7.3288 -2.5056 2.4951
18 6 7.7032 -1.4899 4.3922
19 6 9.1676 -1.0157 4.3504
20 7 9.5156 -0.8067 2.9281
21 6 8.2323 -0.5287 2.2339
22 8 4.0245 -0.5470 1.1888
23 1 -0.4851 0.8400 0.0004
24 1 3.3074 -3.2900 0.5543
25 1 4.3768 -3.0025 -0.8517
26 1 5.7680 0.0582 3.0866
27 1 5.1543 -1.5733 3.4469
28 1 7.0966 -0.7940 4.9718
29 1 7.6418 -2.4916 4.8177
30 1 9.2707 -0.0796 4.8993
31 1 9.8169 -1.7766 4.7835
32 1 9.9659 -1.6230 2.5423
33 1 8.3154 -0.7476 1.1694
34 1 7.9252 0.5051 2.3924
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000258997489.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:51
Heat of formation + Delta-G solvation = -94.799061 kcal
Electronic energy + Delta-G solvation = -16285.385653 eV
Core-core repulsion = 13603.872556 eV
Total energy + Delta-G solvation = -2681.513097 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.58857 -38.48374 -34.15772 -33.05868 -32.28347 -29.69936 -29.03323 -26.31600
-24.82592 -22.45949 -21.39732 -20.85196 -19.71451 -17.39260 -16.82045 -16.27750
-15.44401 -15.18580 -14.47704 -14.24697 -14.05641 -13.81147 -13.60949 -12.76841
-12.50095 -12.28348 -12.14909 -11.68607 -11.61900 -11.42781 -11.07428 -10.93680
-10.74502 -10.51457 -10.10209 -9.92437 -9.64599 -9.09055 -8.73873 -8.71425
-8.68702 -6.23388 -4.34563 3.29594 3.36174 3.58086 4.12363 4.37634
4.41538 4.51822 4.71348 4.89073 4.97764 5.16197 5.34672 5.41520
5.46820 5.52052 5.59581 5.78940 5.82064 5.88298 5.92873 5.97883
6.00069 6.12660 6.23358 6.34661 6.44905 6.62746 6.79648 6.88648
7.21657 7.47121 7.97361 8.26555 8.74909 9.37820 10.86587
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.042783 B = 0.006886 C = 0.006431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 654.306424 B = 4065.267072 C = 4353.137666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.087 3.913
3 Si 0.869 3.131
4 H -0.282 1.282
5 H -0.288 1.288
6 H -0.226 1.226
7 C -0.527 4.527
8 H 0.084 0.916
9 C 0.143 3.857
10 H 0.038 0.962
11 C 0.037 3.963
12 O -0.402 6.402
13 C 0.219 3.781
14 H 0.055 0.945
15 C -0.104 4.104
16 C -0.118 4.118
17 H 0.083 0.917
18 C -0.148 4.148
19 C 0.042 3.958
20 N -0.678 5.678
21 C 0.044 3.956
22 O -0.374 6.374
23 H 0.268 0.732
24 H 0.079 0.921
25 H 0.064 0.936
26 H 0.078 0.922
27 H 0.076 0.924
28 H 0.072 0.928
29 H 0.067 0.933
30 H 0.074 0.926
31 H 0.063 0.937
32 H 0.335 0.665
33 H 0.075 0.925
34 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.623 -1.823 5.343 16.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.119 4.119
3 Si 0.695 3.305
4 H -0.208 1.208
5 H -0.214 1.214
6 H -0.149 1.149
7 C -0.563 4.563
8 H 0.102 0.898
9 C 0.088 3.912
10 H 0.056 0.944
11 C -0.039 4.039
12 O -0.324 6.324
13 C 0.123 3.877
14 H 0.072 0.928
15 C -0.142 4.142
16 C -0.138 4.138
17 H 0.101 0.899
18 C -0.187 4.187
19 C -0.088 4.088
20 N -0.304 5.304
21 C -0.086 4.086
22 O -0.296 6.296
23 H 0.078 0.922
24 H 0.097 0.903
25 H 0.083 0.917
26 H 0.096 0.904
27 H 0.094 0.906
28 H 0.090 0.910
29 H 0.085 0.915
30 H 0.092 0.908
31 H 0.082 0.918
32 H 0.150 0.850
33 H 0.093 0.907
34 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 15.754 -1.013 5.618 16.756
hybrid contribution -0.321 -0.046 -0.218 0.391
sum 15.433 -1.059 5.400 16.385
Atomic orbital electron populations
1.69899 1.06625 1.27734 1.47896 1.25020 0.94744 0.99820 0.92282
0.86989 0.82732 0.82269 0.78483 1.20783 1.21380 1.14936 1.20796
0.86628 0.95305 1.53598 0.89847 1.21753 0.96883 0.87489 0.85098
0.94404 1.23928 0.87263 0.99976 0.92764 1.88714 1.49913 1.26568
1.67200 1.24075 0.89030 0.79609 0.94988 0.92755 1.21636 0.94864
1.02021 0.95643 1.22666 0.95295 1.00452 0.95423 0.89877 1.22854
0.97076 1.01847 0.96958 1.22730 0.94725 1.00698 0.90653 1.62742
1.22831 1.41932 1.02868 1.23266 0.87564 0.99678 0.98071 1.89837
1.27948 1.62984 1.48792 0.92221 0.90324 0.91733 0.90382 0.90556
0.90965 0.91458 0.90759 0.91842 0.84972 0.90662 0.90016
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16
2 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16
3 Si 0.87 21.54 27.12 -169.99 -4.61 16.93 16
4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
6 H -0.23 -5.46 5.37 56.52 0.30 -5.16 16
7 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16
8 H 0.08 2.48 7.84 -52.49 -0.41 2.07 16
9 C 0.14 3.44 2.61 -27.12 -0.07 3.37 16
10 H 0.04 0.89 7.70 -51.93 -0.40 0.49 16
11 C 0.04 0.77 7.65 37.92 0.29 1.06 16
12 O -0.40 -8.05 10.90 -59.28 -0.65 -8.69 16
13 C 0.22 4.21 3.82 37.16 0.14 4.35 16
14 H 0.06 0.98 7.45 -51.93 -0.39 0.59 16
15 C -0.10 -1.66 4.71 -26.73 -0.13 -1.78 16
16 C -0.12 -1.53 3.00 -88.75 -0.27 -1.80 16
17 H 0.08 1.15 7.84 -51.93 -0.41 0.74 16
18 C -0.15 -1.63 6.51 -25.37 -0.17 -1.80 16
19 C 0.04 0.42 7.52 -2.75 -0.02 0.40 16
20 N -0.68 -7.49 7.51 -110.08 -0.83 -8.31 16
21 C 0.04 0.53 6.36 -1.90 -0.01 0.52 16
22 O -0.37 -8.91 8.26 -59.28 -0.49 -9.40 16
23 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16
24 H 0.08 1.67 7.71 -51.93 -0.40 1.27 16
25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
26 H 0.08 1.21 7.99 -51.93 -0.42 0.79 16
27 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16
28 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16
29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.34 3.23 8.92 -39.29 -0.35 2.88 16
33 H 0.07 0.90 7.99 -51.93 -0.41 0.48 16
34 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16
LS Contribution 272.59 15.07 4.11 4.11
Total: -1.00 -30.48 272.59 -7.69 -38.17
By element:
Atomic # 1 Polarization: 6.97 SS G_CDS: -5.35 Total: 1.62 kcal
Atomic # 6 Polarization: -7.77 SS G_CDS: -0.65 Total: -8.42 kcal
Atomic # 7 Polarization: -34.26 SS G_CDS: -0.05 Total: -34.31 kcal
Atomic # 8 Polarization: -16.96 SS G_CDS: -1.14 Total: -18.10 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -4.61 Total: 16.93 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -30.48 -7.69 -38.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258997489.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.626 kcal
(2) G-P(sol) polarization free energy of solvation -30.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.107 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.799 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds