Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00075 * 2 1 4 4 H 1.48494 * 109.47393 * 269.99888 * 3 2 1 5 5 H 1.48498 * 109.47173 * 30.00433 * 3 2 1 6 6 H 1.48504 * 109.47142 * 149.99854 * 3 2 1 7 7 C 1.37883 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99852 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00159 * 179.97438 * 7 2 1 10 10 H 1.08997 * 110.64787 * 298.29158 * 9 7 2 11 11 C 1.54454 * 110.88272 * 175.01885 * 9 7 2 12 12 O 1.43892 * 105.07918 * 219.78373 * 11 9 7 13 13 C 1.43774 * 107.10770 * 358.28745 * 12 11 9 14 14 H 1.09001 * 110.11559 * 265.90862 * 13 12 11 15 15 C 1.53000 * 110.11432 * 144.26436 * 13 12 11 16 16 C 1.53001 * 109.46998 * 68.25769 * 15 13 12 17 17 H 1.09000 * 110.64348 * 308.15624 * 16 15 13 18 18 C 1.54599 * 110.72650 * 185.00132 * 16 15 13 19 19 C 1.53990 * 105.14162 * 219.68417 * 18 16 15 20 20 N 1.47905 * 107.05854 * 358.77408 * 19 18 16 21 21 C 1.48530 * 105.82089 * 25.33108 * 20 19 18 22 22 O 1.44391 * 106.17240 * 25.09000 * 13 12 11 23 23 H 0.97002 * 120.00434 * 359.97438 * 1 2 3 24 24 H 1.09006 * 110.31671 * 338.67650 * 11 9 7 25 25 H 1.08990 * 110.32130 * 100.87840 * 11 9 7 26 26 H 1.08999 * 109.47603 * 188.25408 * 15 13 12 27 27 H 1.09000 * 109.47578 * 308.26142 * 15 13 12 28 28 H 1.09005 * 110.30812 * 338.60112 * 18 16 15 29 29 H 1.09000 * 110.30696 * 100.76598 * 18 16 15 30 30 H 1.09005 * 109.92059 * 118.12505 * 19 18 16 31 31 H 1.08997 * 109.92208 * 239.41961 * 19 18 16 32 32 H 1.00897 * 110.99927 * 264.82076 * 20 19 18 33 33 H 1.08996 * 110.67059 * 202.36148 * 21 20 19 34 34 H 1.08999 * 110.67006 * 79.22683 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8955 -0.7105 -0.8993 11 6 4.0621 -2.6318 0.1236 12 8 5.1934 -2.5241 1.0062 13 6 5.3343 -1.1341 1.3455 14 1 6.0436 -0.6537 0.6714 15 6 5.8050 -0.9912 2.7943 16 6 7.2411 -1.5043 2.9170 17 1 7.3288 -2.5056 2.4951 18 6 7.7032 -1.4899 4.3922 19 6 9.1676 -1.0157 4.3504 20 7 9.5156 -0.8067 2.9281 21 6 8.2323 -0.5287 2.2339 22 8 4.0245 -0.5470 1.1888 23 1 -0.4851 0.8400 0.0004 24 1 3.3074 -3.2900 0.5543 25 1 4.3768 -3.0025 -0.8517 26 1 5.7680 0.0582 3.0866 27 1 5.1543 -1.5733 3.4469 28 1 7.0966 -0.7940 4.9718 29 1 7.6418 -2.4916 4.8177 30 1 9.2707 -0.0796 4.8993 31 1 9.8169 -1.7766 4.7835 32 1 9.9659 -1.6230 2.5423 33 1 8.3154 -0.7476 1.1694 34 1 7.9252 0.5051 2.3924 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258997489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = -117.301992 kcal Electronic energy + Delta-G solvation = -16286.361454 eV Core-core repulsion = 13603.872556 eV Total energy + Delta-G solvation = -2682.488897 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.15959 -39.52910 -35.92502 -34.85824 -33.81969 -31.22391 -30.12100 -27.66409 -26.65665 -23.73640 -22.88710 -22.14770 -20.84562 -19.40432 -18.05283 -17.71990 -17.04255 -16.74869 -16.21603 -15.59841 -15.30159 -15.13641 -14.77165 -14.64045 -14.10692 -13.83783 -13.37104 -13.15023 -12.86676 -12.85815 -12.56383 -12.18141 -12.02343 -11.88891 -11.76772 -11.50575 -11.40910 -10.85228 -10.82110 -10.41197 -9.59577 -8.43133 -6.59300 1.33998 1.37338 1.63138 2.35802 2.69913 2.92326 3.19809 3.40083 3.73231 3.89789 3.96289 3.99645 4.10257 4.25993 4.29886 4.36011 4.49303 4.54737 4.64540 4.72555 4.85147 4.95457 4.99164 5.04969 5.06752 5.12421 5.22626 5.37908 5.51276 5.76414 6.05852 6.25831 6.45336 6.52944 7.17018 8.70436 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.042783 B = 0.006886 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.306424 B = 4065.267072 C = 4353.137666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.031 3.969 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.215 1.215 7 C -0.538 4.538 8 H 0.049 0.951 9 C 0.141 3.859 10 H 0.052 0.948 11 C 0.043 3.957 12 O -0.401 6.401 13 C 0.212 3.788 14 H 0.076 0.924 15 C -0.098 4.098 16 C -0.112 4.112 17 H 0.075 0.925 18 C -0.145 4.145 19 C 0.044 3.956 20 N -0.682 5.682 21 C 0.046 3.954 22 O -0.399 6.399 23 H 0.271 0.729 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.344 0.656 33 H 0.077 0.923 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.235 -1.237 5.639 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.169 4.169 3 Si 0.757 3.243 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.137 1.137 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.086 3.914 10 H 0.069 0.931 11 C -0.034 4.034 12 O -0.323 6.323 13 C 0.117 3.883 14 H 0.093 0.907 15 C -0.137 4.137 16 C -0.132 4.132 17 H 0.094 0.906 18 C -0.184 4.184 19 C -0.086 4.086 20 N -0.309 5.309 21 C -0.084 4.084 22 O -0.321 6.321 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.390 -0.448 5.913 19.322 hybrid contribution -1.129 -0.319 -0.281 1.207 sum 17.260 -0.767 5.632 18.172 Atomic orbital electron populations 1.70022 1.08357 1.28810 1.49814 1.25919 0.95475 1.03612 0.91938 0.85992 0.81626 0.77575 0.79156 1.19377 1.21505 1.13749 1.21040 0.89243 0.94055 1.53136 0.93317 1.21641 0.94369 0.89730 0.85684 0.93071 1.23838 0.87317 0.97937 0.94290 1.88710 1.49279 1.27132 1.67168 1.24496 0.87418 0.78941 0.97467 0.90673 1.21633 0.96467 1.02349 0.93216 1.22583 0.93471 1.00064 0.97092 0.90607 1.22837 0.97720 1.02395 0.95457 1.22759 0.94244 1.01392 0.90187 1.62722 1.22139 1.42670 1.03346 1.23207 0.87804 0.99077 0.98277 1.89743 1.30355 1.63537 1.48426 0.91969 0.91666 0.88685 0.89808 0.91915 0.91072 0.90724 0.90610 0.89984 0.83991 0.90424 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16 2 C 0.03 1.83 5.47 84.66 0.46 2.29 16 3 Si 0.93 44.24 27.12 68.60 1.86 46.10 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.22 -9.72 5.37 99.48 0.53 -9.18 16 7 C -0.54 -30.75 9.39 25.60 0.24 -30.51 16 8 H 0.05 3.03 7.84 -2.91 -0.02 3.00 16 9 C 0.14 6.64 2.61 30.34 0.08 6.72 16 10 H 0.05 2.29 7.70 -2.39 -0.02 2.27 16 11 C 0.04 1.72 7.65 72.48 0.55 2.27 16 12 O -0.40 -15.29 10.90 -125.98 -1.37 -16.67 16 13 C 0.21 7.70 3.82 71.98 0.27 7.97 16 14 H 0.08 2.46 7.45 -2.39 -0.02 2.44 16 15 C -0.10 -2.97 4.71 30.59 0.14 -2.83 16 16 C -0.11 -2.64 3.00 -9.58 -0.03 -2.67 16 17 H 0.08 1.92 7.84 -2.39 -0.02 1.90 16 18 C -0.15 -2.82 6.51 31.47 0.20 -2.62 16 19 C 0.04 0.75 7.52 86.44 0.65 1.39 16 20 N -0.68 -13.09 7.51 -502.19 -3.77 -16.86 16 21 C 0.05 1.00 6.36 86.65 0.55 1.55 16 22 O -0.40 -18.39 8.26 -125.98 -1.04 -19.43 16 23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 24 H 0.07 2.79 7.71 -2.38 -0.02 2.77 16 25 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 26 H 0.08 2.43 7.99 -2.39 -0.02 2.41 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 1.41 7.85 -2.38 -0.02 1.39 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.34 5.61 8.92 -89.70 -0.80 4.81 16 33 H 0.08 1.63 7.99 -2.39 -0.02 1.62 16 34 H 0.08 1.75 7.94 -2.39 -0.02 1.74 16 Total: -1.00 -65.14 272.59 -0.78 -65.93 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.11 Total: 14.71 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 3.13 Total: -16.42 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -3.47 Total: -74.22 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -2.41 Total: -36.10 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.86 Total: 46.10 kcal Total: -65.14 -0.78 -65.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258997489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.374 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds