Wall clock time and date at job start Mon Mar 30 2020 03:18:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86796 * 120.00075 * 2 1
4 4 H 1.48494 * 109.47393 * 269.99888 * 3 2 1
5 5 H 1.48498 * 109.47173 * 30.00433 * 3 2 1
6 6 H 1.48504 * 109.47142 * 149.99854 * 3 2 1
7 7 C 1.37883 * 120.00039 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99852 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00159 * 179.97438 * 7 2 1
10 10 H 1.08997 * 110.64787 * 298.29158 * 9 7 2
11 11 C 1.54454 * 110.88272 * 175.01885 * 9 7 2
12 12 O 1.43892 * 105.07918 * 219.78373 * 11 9 7
13 13 C 1.43774 * 107.10770 * 358.28745 * 12 11 9
14 14 H 1.09001 * 110.11559 * 265.90862 * 13 12 11
15 15 C 1.53000 * 110.11432 * 144.26436 * 13 12 11
16 16 C 1.53001 * 109.46998 * 68.25769 * 15 13 12
17 17 H 1.09000 * 110.64348 * 308.15624 * 16 15 13
18 18 C 1.54599 * 110.72650 * 185.00132 * 16 15 13
19 19 C 1.53990 * 105.14162 * 219.68417 * 18 16 15
20 20 N 1.47905 * 107.05854 * 358.77408 * 19 18 16
21 21 C 1.48530 * 105.82089 * 25.33108 * 20 19 18
22 22 O 1.44391 * 106.17240 * 25.09000 * 13 12 11
23 23 H 0.97002 * 120.00434 * 359.97438 * 1 2 3
24 24 H 1.09006 * 110.31671 * 338.67650 * 11 9 7
25 25 H 1.08990 * 110.32130 * 100.87840 * 11 9 7
26 26 H 1.08999 * 109.47603 * 188.25408 * 15 13 12
27 27 H 1.09000 * 109.47578 * 308.26142 * 15 13 12
28 28 H 1.09005 * 110.30812 * 338.60112 * 18 16 15
29 29 H 1.09000 * 110.30696 * 100.76598 * 18 16 15
30 30 H 1.09005 * 109.92059 * 118.12505 * 19 18 16
31 31 H 1.08997 * 109.92208 * 239.41961 * 19 18 16
32 32 H 1.00897 * 110.99927 * 264.82076 * 20 19 18
33 33 H 1.08996 * 110.67059 * 202.36148 * 21 20 19
34 34 H 1.08999 * 110.67006 * 79.22683 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 1 3.8955 -0.7105 -0.8993
11 6 4.0621 -2.6318 0.1236
12 8 5.1934 -2.5241 1.0062
13 6 5.3343 -1.1341 1.3455
14 1 6.0436 -0.6537 0.6714
15 6 5.8050 -0.9912 2.7943
16 6 7.2411 -1.5043 2.9170
17 1 7.3288 -2.5056 2.4951
18 6 7.7032 -1.4899 4.3922
19 6 9.1676 -1.0157 4.3504
20 7 9.5156 -0.8067 2.9281
21 6 8.2323 -0.5287 2.2339
22 8 4.0245 -0.5470 1.1888
23 1 -0.4851 0.8400 0.0004
24 1 3.3074 -3.2900 0.5543
25 1 4.3768 -3.0025 -0.8517
26 1 5.7680 0.0582 3.0866
27 1 5.1543 -1.5733 3.4469
28 1 7.0966 -0.7940 4.9718
29 1 7.6418 -2.4916 4.8177
30 1 9.2707 -0.0796 4.8993
31 1 9.8169 -1.7766 4.7835
32 1 9.9659 -1.6230 2.5423
33 1 8.3154 -0.7476 1.1694
34 1 7.9252 0.5051 2.3924
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000258997489.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:51
Heat of formation + Delta-G solvation = -117.301992 kcal
Electronic energy + Delta-G solvation = -16286.361454 eV
Core-core repulsion = 13603.872556 eV
Total energy + Delta-G solvation = -2682.488897 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.15959 -39.52910 -35.92502 -34.85824 -33.81969 -31.22391 -30.12100 -27.66409
-26.65665 -23.73640 -22.88710 -22.14770 -20.84562 -19.40432 -18.05283 -17.71990
-17.04255 -16.74869 -16.21603 -15.59841 -15.30159 -15.13641 -14.77165 -14.64045
-14.10692 -13.83783 -13.37104 -13.15023 -12.86676 -12.85815 -12.56383 -12.18141
-12.02343 -11.88891 -11.76772 -11.50575 -11.40910 -10.85228 -10.82110 -10.41197
-9.59577 -8.43133 -6.59300 1.33998 1.37338 1.63138 2.35802 2.69913
2.92326 3.19809 3.40083 3.73231 3.89789 3.96289 3.99645 4.10257
4.25993 4.29886 4.36011 4.49303 4.54737 4.64540 4.72555 4.85147
4.95457 4.99164 5.04969 5.06752 5.12421 5.22626 5.37908 5.51276
5.76414 6.05852 6.25831 6.45336 6.52944 7.17018 8.70436
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.042783 B = 0.006886 C = 0.006431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 654.306424 B = 4065.267072 C = 4353.137666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.031 3.969
3 Si 0.934 3.066
4 H -0.268 1.268
5 H -0.289 1.289
6 H -0.215 1.215
7 C -0.538 4.538
8 H 0.049 0.951
9 C 0.141 3.859
10 H 0.052 0.948
11 C 0.043 3.957
12 O -0.401 6.401
13 C 0.212 3.788
14 H 0.076 0.924
15 C -0.098 4.098
16 C -0.112 4.112
17 H 0.075 0.925
18 C -0.145 4.145
19 C 0.044 3.956
20 N -0.682 5.682
21 C 0.046 3.954
22 O -0.399 6.399
23 H 0.271 0.729
24 H 0.065 0.935
25 H 0.095 0.905
26 H 0.083 0.917
27 H 0.062 0.938
28 H 0.071 0.929
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.082 0.918
32 H 0.344 0.656
33 H 0.077 0.923
34 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.235 -1.237 5.639 19.127
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.169 4.169
3 Si 0.757 3.243
4 H -0.194 1.194
5 H -0.215 1.215
6 H -0.137 1.137
7 C -0.575 4.575
8 H 0.067 0.933
9 C 0.086 3.914
10 H 0.069 0.931
11 C -0.034 4.034
12 O -0.323 6.323
13 C 0.117 3.883
14 H 0.093 0.907
15 C -0.137 4.137
16 C -0.132 4.132
17 H 0.094 0.906
18 C -0.184 4.184
19 C -0.086 4.086
20 N -0.309 5.309
21 C -0.084 4.084
22 O -0.321 6.321
23 H 0.080 0.920
24 H 0.083 0.917
25 H 0.113 0.887
26 H 0.102 0.898
27 H 0.081 0.919
28 H 0.089 0.911
29 H 0.093 0.907
30 H 0.094 0.906
31 H 0.100 0.900
32 H 0.160 0.840
33 H 0.096 0.904
34 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 18.390 -0.448 5.913 19.322
hybrid contribution -1.129 -0.319 -0.281 1.207
sum 17.260 -0.767 5.632 18.172
Atomic orbital electron populations
1.70022 1.08357 1.28810 1.49814 1.25919 0.95475 1.03612 0.91938
0.85992 0.81626 0.77575 0.79156 1.19377 1.21505 1.13749 1.21040
0.89243 0.94055 1.53136 0.93317 1.21641 0.94369 0.89730 0.85684
0.93071 1.23838 0.87317 0.97937 0.94290 1.88710 1.49279 1.27132
1.67168 1.24496 0.87418 0.78941 0.97467 0.90673 1.21633 0.96467
1.02349 0.93216 1.22583 0.93471 1.00064 0.97092 0.90607 1.22837
0.97720 1.02395 0.95457 1.22759 0.94244 1.01392 0.90187 1.62722
1.22139 1.42670 1.03346 1.23207 0.87804 0.99077 0.98277 1.89743
1.30355 1.63537 1.48426 0.91969 0.91666 0.88685 0.89808 0.91915
0.91072 0.90724 0.90610 0.89984 0.83991 0.90424 0.90495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16
2 C 0.03 1.83 5.47 84.66 0.46 2.29 16
3 Si 0.93 44.24 27.12 68.60 1.86 46.10 16
4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16
5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16
6 H -0.22 -9.72 5.37 99.48 0.53 -9.18 16
7 C -0.54 -30.75 9.39 25.60 0.24 -30.51 16
8 H 0.05 3.03 7.84 -2.91 -0.02 3.00 16
9 C 0.14 6.64 2.61 30.34 0.08 6.72 16
10 H 0.05 2.29 7.70 -2.39 -0.02 2.27 16
11 C 0.04 1.72 7.65 72.48 0.55 2.27 16
12 O -0.40 -15.29 10.90 -125.98 -1.37 -16.67 16
13 C 0.21 7.70 3.82 71.98 0.27 7.97 16
14 H 0.08 2.46 7.45 -2.39 -0.02 2.44 16
15 C -0.10 -2.97 4.71 30.59 0.14 -2.83 16
16 C -0.11 -2.64 3.00 -9.58 -0.03 -2.67 16
17 H 0.08 1.92 7.84 -2.39 -0.02 1.90 16
18 C -0.15 -2.82 6.51 31.47 0.20 -2.62 16
19 C 0.04 0.75 7.52 86.44 0.65 1.39 16
20 N -0.68 -13.09 7.51 -502.19 -3.77 -16.86 16
21 C 0.05 1.00 6.36 86.65 0.55 1.55 16
22 O -0.40 -18.39 8.26 -125.98 -1.04 -19.43 16
23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
24 H 0.07 2.79 7.71 -2.38 -0.02 2.77 16
25 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16
26 H 0.08 2.43 7.99 -2.39 -0.02 2.41 16
27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
28 H 0.07 1.41 7.85 -2.38 -0.02 1.39 16
29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16
31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
32 H 0.34 5.61 8.92 -89.70 -0.80 4.81 16
33 H 0.08 1.63 7.99 -2.39 -0.02 1.62 16
34 H 0.08 1.75 7.94 -2.39 -0.02 1.74 16
Total: -1.00 -65.14 272.59 -0.78 -65.93
By element:
Atomic # 1 Polarization: 14.60 SS G_CDS: 0.11 Total: 14.71 kcal
Atomic # 6 Polarization: -19.55 SS G_CDS: 3.13 Total: -16.42 kcal
Atomic # 7 Polarization: -70.75 SS G_CDS: -3.47 Total: -74.22 kcal
Atomic # 8 Polarization: -33.68 SS G_CDS: -2.41 Total: -36.10 kcal
Atomic # 14 Polarization: 44.24 SS G_CDS: 1.86 Total: 46.10 kcal
Total: -65.14 -0.78 -65.93 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258997489.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.374 kcal
(2) G-P(sol) polarization free energy of solvation -65.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds