Wall clock time and date at job start Mon Mar 30 2020 03:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48497 * 109.47410 * 270.00527 * 3 2 1 5 5 H 1.48500 * 109.46934 * 30.00274 * 3 2 1 6 6 H 1.48497 * 109.46940 * 150.00233 * 3 2 1 7 7 C 1.37873 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00326 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00020 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.54611 * 60.10827 * 9 7 2 11 11 C 1.53102 * 109.50819 * 300.00111 * 9 7 2 12 12 O 1.43010 * 109.29479 * 183.23908 * 11 9 7 13 13 C 1.43015 * 113.73771 * 58.64707 * 12 11 9 14 14 C 1.53093 * 109.25988 * 301.32691 * 13 12 11 15 15 N 1.47009 * 109.25666 * 56.85260 * 14 13 12 16 16 C 1.46908 * 110.99905 * 177.61050 * 15 14 13 17 17 H 1.09001 * 110.45176 * 178.02098 * 16 15 14 18 18 C 1.54511 * 110.50939 * 300.62205 * 16 15 14 19 19 C 1.54480 * 104.05771 * 118.64797 * 18 16 15 20 20 O 1.44419 * 104.80514 * 23.97706 * 19 18 16 21 21 C 1.44424 * 105.27992 * 319.48702 * 20 19 18 22 22 H 0.97005 * 120.00637 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.50685 * 63.28196 * 11 9 7 24 24 H 1.09004 * 109.50191 * 303.19164 * 11 9 7 25 25 H 1.09002 * 109.51250 * 61.26581 * 13 12 11 26 26 H 1.09006 * 109.50461 * 181.39131 * 13 12 11 27 27 H 1.09002 * 109.50905 * 176.78724 * 14 13 12 28 28 H 1.09004 * 109.50730 * 296.87244 * 14 13 12 29 29 H 1.08994 * 110.51174 * 237.29566 * 18 16 15 30 30 H 1.09004 * 110.50774 * 0.02562 * 18 16 15 31 31 H 1.09002 * 110.36884 * 142.81248 * 19 18 16 32 32 H 1.09002 * 110.37021 * 265.14599 * 19 18 16 33 33 H 1.08998 * 110.37322 * 281.68094 * 21 20 19 34 34 H 1.08998 * 110.37019 * 159.33852 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6251 -2.5588 -0.8909 11 6 0.3710 -2.5814 1.2496 12 8 -0.2837 -3.8523 1.2837 13 6 0.6164 -4.9637 1.2898 14 6 1.4981 -4.9063 0.0396 15 7 2.2050 -3.6178 0.0036 16 6 3.1073 -3.5445 -1.1534 17 1 3.6003 -2.5731 -1.1909 18 6 4.1530 -4.6805 -1.0973 19 6 3.8857 -5.5003 -2.3791 20 8 3.2445 -4.5739 -3.2826 21 6 2.3318 -3.8122 -2.4623 22 1 -0.4851 0.8400 0.0004 23 1 -0.3757 -1.7879 1.2218 24 1 0.9907 -2.4672 2.1390 25 1 1.2438 -4.9192 2.1800 26 1 0.0469 -5.8932 1.2912 27 1 2.2239 -5.7190 0.0684 28 1 0.8756 -5.0056 -0.8497 29 1 5.1630 -4.2709 -1.1096 30 1 4.0002 -5.2968 -0.2113 31 1 4.8240 -5.8570 -2.8039 32 1 3.2235 -6.3385 -2.1621 33 1 1.4314 -4.3915 -2.2582 34 1 2.0766 -2.8721 -2.9513 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259684127.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:38 Heat of formation + Delta-G solvation = -96.752731 kcal Electronic energy + Delta-G solvation = -17069.515775 eV Core-core repulsion = 14387.917960 eV Total energy + Delta-G solvation = -2681.597814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26449 -39.39178 -36.42052 -35.04364 -32.00903 -31.62270 -29.77384 -27.56120 -26.56944 -24.10944 -23.98962 -21.85860 -20.47762 -18.62320 -17.88137 -17.35383 -16.68547 -16.63163 -16.22314 -16.01508 -15.57910 -15.42733 -14.92580 -14.33306 -14.18092 -13.65274 -13.23398 -12.86397 -12.71702 -12.60216 -12.47495 -12.37785 -12.09782 -11.90812 -11.66666 -11.37183 -10.98666 -10.84682 -10.67954 -10.27230 -9.00899 -8.19976 -6.31526 1.41235 1.42758 1.53006 2.37943 2.84305 3.05394 3.22592 3.41123 3.74040 3.89288 4.01471 4.16730 4.22663 4.30517 4.41861 4.43631 4.61072 4.69636 4.77716 4.82768 4.85263 4.94881 4.96807 5.10727 5.19986 5.33808 5.51349 5.62384 5.74282 6.00313 6.23087 6.43936 6.61738 6.82214 7.38111 8.87386 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.011402 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.372440 B = 2455.143570 C = 3271.015185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.196 3.804 10 H -0.028 1.028 11 C 0.081 3.919 12 O -0.420 6.420 13 C 0.059 3.941 14 C 0.010 3.990 15 N -0.524 5.524 16 C 0.061 3.939 17 H 0.081 0.919 18 C -0.142 4.142 19 C 0.041 3.959 20 O -0.396 6.396 21 C 0.022 3.978 22 H 0.266 0.734 23 H 0.094 0.906 24 H 0.029 0.971 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -10.090 -0.424 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.089 3.911 10 H -0.010 1.010 11 C 0.004 3.996 12 O -0.339 6.339 13 C -0.017 4.017 14 C -0.118 4.118 15 N -0.249 5.249 16 C -0.049 4.049 17 H 0.100 0.900 18 C -0.180 4.180 19 C -0.035 4.035 20 O -0.314 6.314 21 C -0.056 4.056 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.125 0.875 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.172 -9.933 -0.213 11.696 hybrid contribution -0.292 1.233 -0.625 1.413 sum 5.879 -8.700 -0.838 10.534 Atomic orbital electron populations 1.69969 1.07238 1.27798 1.50896 1.25739 0.95669 1.02581 0.94400 0.85488 0.78723 0.78909 0.78162 1.20333 1.20784 1.19055 1.21276 0.93358 0.90320 1.51028 0.91815 1.19575 0.89582 0.89232 0.92750 1.01026 1.22752 0.96478 0.83467 0.96903 1.87871 1.35193 1.15779 1.95100 1.22809 0.92280 0.89989 0.96660 1.22958 0.97497 0.93512 0.97864 1.62459 1.20285 1.02299 1.39836 1.22978 0.93906 1.00503 0.87499 0.90040 1.23012 0.99099 0.96528 0.99338 1.23664 0.98675 0.91983 0.89208 1.89051 1.57213 1.52117 1.33051 1.23960 0.93375 0.95414 0.92887 0.92523 0.88825 0.95296 0.92568 0.86469 0.87497 0.95530 0.89509 0.88544 0.86721 0.91386 0.92629 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.14 11.36 21.45 0.24 -51.89 16 2 C 0.02 0.84 5.30 84.65 0.45 1.29 16 3 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.52 -27.90 7.88 25.60 0.20 -27.69 16 8 H 0.06 3.37 6.56 -2.91 -0.02 3.35 16 9 C 0.20 9.85 1.76 44.18 0.08 9.93 16 10 H -0.03 -1.58 7.50 -2.38 -0.02 -1.60 16 11 C 0.08 4.05 6.02 72.02 0.43 4.48 16 12 O -0.42 -18.81 10.83 -148.98 -1.61 -20.42 16 13 C 0.06 2.01 7.01 72.01 0.50 2.51 16 14 C 0.01 0.32 4.96 86.31 0.43 0.75 16 15 N -0.52 -21.40 4.52 -843.34 -3.81 -25.22 16 16 C 0.06 2.27 2.95 45.93 0.14 2.40 16 17 H 0.08 3.46 6.24 -2.39 -0.01 3.44 16 18 C -0.14 -3.85 6.20 31.61 0.20 -3.66 16 19 C 0.04 1.02 7.63 72.49 0.55 1.57 16 20 O -0.40 -13.51 11.65 -148.98 -1.74 -15.24 16 21 C 0.02 0.84 6.15 72.49 0.45 1.28 16 22 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 23 H 0.09 5.23 6.17 -2.39 -0.01 5.22 16 24 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 27 H 0.11 2.83 6.27 -2.39 -0.01 2.81 16 28 H 0.03 0.97 5.91 -2.39 -0.01 0.95 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.10 2.36 6.44 -2.38 -0.02 2.34 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.14 5.50 -2.39 -0.01 2.13 16 34 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -61.42 260.96 -0.38 -61.80 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.09 Total: 13.27 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 3.42 Total: -7.13 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -3.57 Total: -77.11 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -3.35 Total: -35.67 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.42 -0.38 -61.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259684127.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.954 kcal (2) G-P(sol) polarization free energy of solvation -61.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds