Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48496 * 109.46855 * 269.99860 * 3 2 1 5 5 H 1.48496 * 109.47022 * 29.99869 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00410 * 3 2 1 7 7 C 1.37875 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47151 * 180.02562 * 9 7 2 11 11 O 1.20763 * 119.99937 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99878 * 180.27611 * 10 9 7 13 13 C 1.53003 * 109.46878 * 179.72241 * 12 10 9 14 14 N 1.46901 * 109.46635 * 180.02562 * 13 12 10 15 15 C 1.47020 * 110.99799 * 293.63085 * 14 13 12 16 16 C 1.53094 * 109.25496 * 177.61145 * 15 14 13 17 17 O 1.43021 * 109.25964 * 56.85002 * 16 15 14 18 18 C 1.43009 * 113.73869 * 301.32429 * 17 16 15 19 19 C 1.47012 * 110.99871 * 169.99973 * 14 13 12 20 20 H 0.96997 * 119.99515 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47275 * 60.00051 * 9 7 2 22 22 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 23 23 H 1.09004 * 109.46965 * 299.72098 * 12 10 9 24 24 H 1.08994 * 109.46990 * 59.71952 * 12 10 9 25 25 H 1.08998 * 109.46943 * 299.99345 * 13 12 10 26 26 H 1.08994 * 109.47116 * 59.99734 * 13 12 10 27 27 H 1.09000 * 109.50528 * 297.54704 * 15 14 13 28 28 H 1.08996 * 109.50472 * 57.67913 * 15 14 13 29 29 H 1.09001 * 109.50857 * 296.91203 * 16 15 14 30 30 H 1.09001 * 109.54077 * 176.80293 * 16 15 14 31 31 H 1.08998 * 109.51024 * 298.73883 * 18 17 16 32 32 H 1.08996 * 109.54490 * 178.62427 * 18 17 16 33 33 H 1.09003 * 109.50542 * 302.32454 * 19 14 13 34 34 H 1.09001 * 109.50907 * 62.40699 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2302 -3.6447 -0.0015 11 8 3.4175 -3.4240 -0.0009 12 6 1.7278 -5.0655 -0.0088 13 6 2.9178 -6.0271 -0.0139 14 7 2.4280 -7.4121 -0.0217 15 6 1.7335 -7.7323 1.2339 16 6 1.1891 -9.1612 1.1595 17 8 2.2662 -10.0631 0.8914 18 6 2.9643 -9.7808 -0.3244 19 6 3.5267 -8.3581 -0.2651 20 1 -0.4849 0.8401 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6240 -2.5575 0.8881 23 1 1.1224 -5.2413 0.8804 24 1 1.1221 -5.2320 -0.8995 25 1 3.5232 -5.8513 -0.9031 26 1 3.5235 -5.8605 0.8768 27 1 2.4319 -7.6517 2.0669 28 1 0.9083 -7.0356 1.3813 29 1 0.4507 -9.2283 0.3605 30 1 0.7226 -9.4235 2.1091 31 1 2.2776 -9.8659 -1.1666 32 1 3.7822 -10.4905 -0.4485 33 1 4.0105 -8.1181 -1.2119 34 1 4.2542 -8.2870 0.5435 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = -87.773647 kcal Electronic energy + Delta-G solvation = -15585.194435 eV Core-core repulsion = 12903.985983 eV Total energy + Delta-G solvation = -2681.208452 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71861 -38.42928 -35.93094 -32.95594 -31.55766 -31.02935 -29.08689 -26.87625 -24.16158 -23.96457 -21.88869 -20.42379 -18.54824 -16.68857 -16.37333 -16.24778 -15.48329 -15.18701 -15.02235 -14.91073 -14.32797 -14.28694 -13.35809 -13.27679 -12.81012 -12.34931 -12.02267 -11.88608 -11.52823 -11.35831 -11.14913 -10.82396 -10.79970 -10.63404 -10.52725 -10.03030 -9.81451 -9.30204 -8.48634 -8.45159 -8.34637 -6.07163 -4.08054 3.02896 3.32478 3.38025 3.44429 3.60638 3.76989 4.43818 4.72182 4.85431 4.88266 5.00235 5.10532 5.21407 5.30048 5.33153 5.37878 5.41080 5.48654 5.65153 5.70632 5.82356 5.87009 6.13026 6.19948 6.67771 6.88674 6.92123 6.99052 7.22772 7.34308 7.91727 8.21057 8.68334 9.01515 9.57168 11.04833 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.070989 B = 0.004514 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.330579 B = 6201.049744 C = 6452.945873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.027 4.027 10 C 0.356 3.644 11 O -0.469 6.469 12 C -0.172 4.172 13 C 0.066 3.934 14 N -0.539 5.539 15 C 0.012 3.988 16 C 0.064 3.936 17 O -0.389 6.389 18 C 0.065 3.935 19 C 0.017 3.983 20 H 0.262 0.738 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -17.578 0.467 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.064 4.064 10 C 0.233 3.767 11 O -0.344 6.344 12 C -0.210 4.210 13 C -0.062 4.062 14 N -0.264 5.264 15 C -0.117 4.117 16 C -0.013 4.013 17 O -0.308 6.308 18 C -0.012 4.012 19 C -0.112 4.112 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.107 0.893 24 H 0.117 0.883 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.043 -17.547 0.209 17.666 hybrid contribution 0.717 1.284 0.471 1.545 sum 2.760 -16.262 0.680 16.509 Atomic orbital electron populations 1.69961 1.06048 1.26892 1.50980 1.25009 0.94884 0.99464 0.95125 0.86475 0.79868 0.82833 0.78196 1.20581 1.21216 1.19732 1.21195 0.94112 0.89724 1.50498 0.91041 1.19596 0.95131 0.92001 0.99635 1.25191 0.90903 0.91388 0.69267 1.90234 1.19938 1.87673 1.36558 1.22229 0.99226 0.95086 1.04483 1.21938 0.96577 0.85710 1.01939 1.62253 1.26995 1.03172 1.33967 1.22868 0.99755 0.97982 0.91051 1.22680 0.89063 0.87849 1.01690 1.87960 1.47247 1.53834 1.41726 1.22655 0.96384 0.94973 0.87225 1.22775 0.93167 0.93209 1.02022 0.92888 0.92941 0.93070 0.89324 0.88295 0.90164 0.94195 0.93948 0.89008 0.92178 0.88515 0.92248 0.88624 0.89563 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.89 8.92 -34.44 -0.31 -15.20 16 8 H 0.07 2.12 6.76 -52.49 -0.35 1.77 16 9 C -0.03 -0.67 5.40 -29.03 -0.16 -0.83 16 10 C 0.36 7.64 7.15 -29.03 -0.21 7.43 16 11 O -0.47 -11.37 15.08 6.00 0.09 -11.28 16 12 C -0.17 -2.75 5.57 -27.88 -0.16 -2.91 16 13 C 0.07 0.98 4.25 -3.82 -0.02 0.96 16 14 N -0.54 -6.91 4.73 -234.30 -1.11 -8.02 16 15 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 16 C 0.06 0.65 7.01 37.21 0.26 0.92 16 17 O -0.39 -4.56 10.83 -35.23 -0.38 -4.95 16 18 C 0.06 0.64 7.01 37.21 0.26 0.90 16 19 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 22 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 23 H 0.09 1.28 6.52 -51.93 -0.34 0.94 16 24 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.08 1.25 7.99 -51.93 -0.42 0.83 16 26 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.01 6.38 -51.93 -0.33 0.68 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 282.03 15.07 4.25 4.25 Total: -1.00 -31.73 282.03 -7.11 -38.84 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.22 Total: -3.23 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.46 Total: -6.93 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.37 Total: -33.70 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.29 Total: -16.23 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.73 -7.11 -38.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.934 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds