Wall clock time and date at job start Mon Mar 30 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48496 * 109.46855 * 269.99860 * 3 2 1 5 5 H 1.48496 * 109.47022 * 29.99869 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00410 * 3 2 1 7 7 C 1.37875 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47151 * 180.02562 * 9 7 2 11 11 O 1.20763 * 119.99937 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99878 * 180.27611 * 10 9 7 13 13 C 1.53003 * 109.46878 * 179.72241 * 12 10 9 14 14 N 1.46901 * 109.46635 * 180.02562 * 13 12 10 15 15 C 1.47020 * 110.99799 * 293.63085 * 14 13 12 16 16 C 1.53094 * 109.25496 * 177.61145 * 15 14 13 17 17 O 1.43021 * 109.25964 * 56.85002 * 16 15 14 18 18 C 1.43009 * 113.73869 * 301.32429 * 17 16 15 19 19 C 1.47012 * 110.99871 * 169.99973 * 14 13 12 20 20 H 0.96997 * 119.99515 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47275 * 60.00051 * 9 7 2 22 22 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 23 23 H 1.09004 * 109.46965 * 299.72098 * 12 10 9 24 24 H 1.08994 * 109.46990 * 59.71952 * 12 10 9 25 25 H 1.08998 * 109.46943 * 299.99345 * 13 12 10 26 26 H 1.08994 * 109.47116 * 59.99734 * 13 12 10 27 27 H 1.09000 * 109.50528 * 297.54704 * 15 14 13 28 28 H 1.08996 * 109.50472 * 57.67913 * 15 14 13 29 29 H 1.09001 * 109.50857 * 296.91203 * 16 15 14 30 30 H 1.09001 * 109.54077 * 176.80293 * 16 15 14 31 31 H 1.08998 * 109.51024 * 298.73883 * 18 17 16 32 32 H 1.08996 * 109.54490 * 178.62427 * 18 17 16 33 33 H 1.09003 * 109.50542 * 302.32454 * 19 14 13 34 34 H 1.09001 * 109.50907 * 62.40699 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2302 -3.6447 -0.0015 11 8 3.4175 -3.4240 -0.0009 12 6 1.7278 -5.0655 -0.0088 13 6 2.9178 -6.0271 -0.0139 14 7 2.4280 -7.4121 -0.0217 15 6 1.7335 -7.7323 1.2339 16 6 1.1891 -9.1612 1.1595 17 8 2.2662 -10.0631 0.8914 18 6 2.9643 -9.7808 -0.3244 19 6 3.5267 -8.3581 -0.2651 20 1 -0.4849 0.8401 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6240 -2.5575 0.8881 23 1 1.1224 -5.2413 0.8804 24 1 1.1221 -5.2320 -0.8995 25 1 3.5232 -5.8513 -0.9031 26 1 3.5235 -5.8605 0.8768 27 1 2.4319 -7.6517 2.0669 28 1 0.9083 -7.0356 1.3813 29 1 0.4507 -9.2283 0.3605 30 1 0.7226 -9.4235 2.1091 31 1 2.2776 -9.8659 -1.1666 32 1 3.7822 -10.4905 -0.4485 33 1 4.0105 -8.1181 -1.2119 34 1 4.2542 -8.2870 0.5435 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:19 Heat of formation + Delta-G solvation = -110.154630 kcal Electronic energy + Delta-G solvation = -15586.164947 eV Core-core repulsion = 12903.985983 eV Total energy + Delta-G solvation = -2682.178964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76090 -40.01564 -36.97043 -35.11915 -32.72973 -32.04885 -30.96769 -28.07244 -25.79407 -25.00912 -23.26025 -21.34456 -20.22154 -18.52343 -17.71564 -17.16920 -16.78894 -16.65072 -16.26283 -15.99702 -15.79981 -15.60911 -15.00054 -14.56848 -14.17936 -13.95609 -13.28561 -13.15420 -13.03470 -12.80848 -12.57976 -12.44826 -12.30949 -12.08176 -11.84715 -11.47345 -11.45394 -10.68660 -10.63755 -10.16100 -9.47368 -8.26124 -6.34655 1.28781 1.38389 1.38770 1.51109 2.38211 2.61964 2.96605 3.08490 3.56856 3.83062 3.94703 3.98760 4.11310 4.20446 4.33955 4.35106 4.51070 4.61643 4.73388 4.80947 4.82813 4.90441 4.94911 4.97477 5.06077 5.19381 5.31414 5.69238 5.85943 5.93194 6.11315 6.18210 6.77235 6.92467 7.34638 8.85505 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.070989 B = 0.004514 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.330579 B = 6201.049744 C = 6452.945873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.054 0.946 9 C -0.031 4.031 10 C 0.363 3.637 11 O -0.501 6.501 12 C -0.154 4.154 13 C 0.074 3.926 14 N -0.540 5.540 15 C 0.008 3.992 16 C 0.065 3.935 17 O -0.406 6.406 18 C 0.066 3.934 19 C 0.014 3.986 20 H 0.267 0.733 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 -18.426 0.348 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.068 4.068 10 C 0.241 3.759 11 O -0.378 6.378 12 C -0.192 4.192 13 C -0.053 4.053 14 N -0.265 5.265 15 C -0.120 4.120 16 C -0.011 4.011 17 O -0.325 6.325 18 C -0.011 4.011 19 C -0.114 4.114 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.128 0.872 24 H 0.135 0.865 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.821 -18.413 0.088 18.503 hybrid contribution 0.762 1.529 0.510 1.783 sum 2.583 -16.884 0.598 17.091 Atomic orbital electron populations 1.70037 1.07182 1.28035 1.51186 1.25798 0.95814 1.02791 0.94505 0.85506 0.78517 0.78811 0.78591 1.19667 1.19934 1.19865 1.21470 0.93684 0.91938 1.51278 0.92776 1.19561 0.95617 0.92613 0.99021 1.25256 0.89576 0.93123 0.67945 1.90223 1.20985 1.88464 1.38095 1.22039 0.99820 0.91048 1.06260 1.21747 0.95650 0.87025 1.00916 1.62259 1.27460 1.02114 1.34654 1.22972 0.99625 0.99285 0.90123 1.22783 0.88777 0.86595 1.02994 1.87944 1.47736 1.54275 1.42510 1.22775 0.97059 0.94391 0.86857 1.22880 0.92689 0.93709 1.02158 0.92427 0.93563 0.93644 0.87168 0.86503 0.90937 0.95703 0.94848 0.88339 0.91531 0.86666 0.91620 0.86551 0.88690 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.29 13.29 21.45 0.28 -54.01 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.55 -31.90 8.92 25.60 0.23 -31.67 16 8 H 0.05 3.29 6.76 -2.91 -0.02 3.27 16 9 C -0.03 -1.58 5.40 29.10 0.16 -1.42 16 10 C 0.36 15.55 7.15 29.10 0.21 15.76 16 11 O -0.50 -24.59 15.08 -1.46 -0.02 -24.61 16 12 C -0.15 -4.70 5.57 29.85 0.17 -4.54 16 13 C 0.07 2.15 4.25 86.30 0.37 2.52 16 14 N -0.54 -12.90 4.73 -895.20 -4.23 -17.14 16 15 C 0.01 0.17 5.44 86.31 0.47 0.64 16 16 C 0.07 1.18 7.01 72.01 0.50 1.68 16 17 O -0.41 -8.64 10.83 -148.98 -1.61 -10.25 16 18 C 0.07 1.15 7.01 72.02 0.50 1.66 16 19 C 0.01 0.28 5.64 86.32 0.49 0.77 16 20 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 21 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 23 H 0.11 2.94 6.52 -2.38 -0.02 2.93 16 24 H 0.12 3.23 8.14 -2.39 -0.02 3.22 16 25 H 0.07 2.20 7.99 -2.39 -0.02 2.18 16 26 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 1.93 6.38 -2.39 -0.02 1.92 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 34 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -67.39 282.03 1.07 -66.32 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.07 Total: 6.13 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.55 Total: -13.59 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -3.95 Total: -71.15 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.63 Total: -34.86 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.39 1.07 -66.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.831 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds