Wall clock time and date at job start Mon Mar 30 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 O 1.42964 * 109.46410 * 300.04809 * 9 7 2 11 11 C 1.43120 * 113.75794 * 181.15762 * 10 9 7 12 12 C 1.53112 * 108.94215 * 57.78092 * 11 10 9 13 13 C 1.52992 * 109.57744 * 65.63013 * 12 11 10 14 14 C 1.53057 * 109.28166 * 177.65600 * 13 12 11 15 15 N 1.46846 * 109.50296 * 300.98548 * 14 13 12 16 16 C 1.46847 * 111.23807 * 61.79434 * 15 14 13 17 17 C 1.52977 * 109.61921 * 185.70664 * 12 11 10 18 18 C 1.53125 * 109.09427 * 305.69144 * 12 11 10 19 19 O 1.42969 * 109.46401 * 179.97438 * 9 7 2 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09003 * 109.46598 * 60.01938 * 9 7 2 22 22 H 1.09003 * 109.56100 * 297.94635 * 11 10 9 23 23 H 1.08999 * 109.56076 * 177.61856 * 11 10 9 24 24 H 1.09006 * 109.49587 * 297.59500 * 13 12 11 25 25 H 1.08993 * 109.50223 * 57.70732 * 13 12 11 26 26 H 1.08997 * 109.46687 * 180.97821 * 14 13 12 27 27 H 1.08998 * 109.46753 * 60.99432 * 14 13 12 28 28 H 1.00905 * 110.99450 * 297.67141 * 15 14 13 29 29 H 1.08996 * 109.46565 * 178.19579 * 16 15 14 30 30 H 1.09003 * 109.45269 * 58.22285 * 16 15 14 31 31 H 1.08993 * 109.50597 * 302.32571 * 17 12 11 32 32 H 1.08994 * 109.49941 * 62.44281 * 17 12 11 33 33 H 1.08994 * 109.56211 * 294.48571 * 18 12 11 34 34 H 1.08994 * 109.56288 * 174.15270 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 8 3.9830 -0.5163 -1.1792 11 6 5.4095 -0.4853 -1.2912 12 6 5.9394 -1.9218 -1.2909 13 6 5.4588 -2.6457 -2.5502 14 6 6.0401 -4.0615 -2.5721 15 7 7.5066 -3.9897 -2.5525 16 6 7.9912 -3.3425 -1.3267 17 6 7.4689 -1.9050 -1.2668 18 6 5.4147 -2.6491 -0.0498 19 8 3.9879 -2.5421 -0.0168 20 1 -0.4849 0.8401 0.0041 21 1 3.8785 -0.6827 0.8778 22 1 5.8302 0.0589 -0.4456 23 1 5.6919 0.0077 -2.2214 24 1 4.3701 -2.6993 -2.5459 25 1 5.7935 -2.1011 -3.4330 26 1 5.7136 -4.5741 -3.4769 27 1 5.6916 -4.6108 -1.6976 28 1 7.8565 -3.5180 -3.3731 29 1 9.0811 -3.3333 -1.3273 30 1 7.6332 -3.8956 -0.4583 31 1 7.8404 -1.3468 -2.1260 32 1 7.8131 -1.4309 -0.3477 33 1 5.8353 -2.1922 0.8460 34 1 5.7008 -3.6998 -0.0943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:16 Heat of formation + Delta-G solvation = -95.909960 kcal Electronic energy + Delta-G solvation = -17113.742568 eV Core-core repulsion = 14432.181299 eV Total energy + Delta-G solvation = -2681.561269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24850 -37.46708 -34.68831 -33.16885 -32.19432 -30.78874 -27.87366 -25.78972 -25.49152 -22.88850 -22.30646 -21.42793 -18.76942 -17.28735 -16.40917 -16.16138 -15.06898 -14.90016 -14.62846 -14.50833 -14.22113 -13.85679 -13.67315 -12.86771 -12.57199 -12.32797 -12.13425 -11.89591 -11.65992 -11.17187 -10.93603 -10.88117 -10.62965 -10.26678 -10.19717 -9.85439 -9.62474 -9.11911 -8.79867 -8.58364 -8.28793 -6.23623 -4.33737 3.31615 3.35237 3.43340 4.31572 4.34139 4.56915 4.60539 4.70765 4.85425 5.02780 5.20252 5.25856 5.38003 5.40624 5.51467 5.64596 5.77474 5.79431 5.82626 5.86294 5.97924 6.07764 6.15985 6.22339 6.36031 6.44010 6.55749 7.04677 7.35539 7.36209 7.77926 8.23317 8.46766 8.85234 9.35662 10.86091 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.049159 B = 0.008687 C = 0.008169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.448399 B = 3222.546840 C = 3426.630139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.091 0.909 9 C 0.337 3.663 10 O -0.391 6.391 11 C 0.059 3.941 12 C -0.123 4.123 13 C -0.134 4.134 14 C 0.054 3.946 15 N -0.687 5.687 16 C 0.056 3.944 17 C -0.144 4.144 18 C 0.065 3.935 19 O -0.381 6.381 20 H 0.270 0.730 21 H 0.016 0.984 22 H 0.038 0.962 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.336 0.664 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.426 -3.030 -3.154 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.118 4.118 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.109 0.891 9 C 0.245 3.755 10 O -0.312 6.312 11 C -0.019 4.019 12 C -0.124 4.124 13 C -0.173 4.173 14 C -0.075 4.075 15 N -0.315 5.315 16 C -0.073 4.073 17 C -0.184 4.184 18 C -0.013 4.013 19 O -0.302 6.302 20 H 0.080 0.920 21 H 0.033 0.967 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.153 0.847 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.069 -3.664 -3.029 15.801 hybrid contribution 0.584 2.094 -0.048 2.174 sum 15.653 -1.571 -3.078 16.030 Atomic orbital electron populations 1.69881 1.06326 1.27751 1.47839 1.24854 0.94842 0.99435 0.92652 0.86376 0.79185 0.82137 0.78805 1.19738 1.22304 1.19860 1.20609 0.85791 0.95756 1.52340 0.89056 1.21699 0.94265 0.75800 0.83708 1.88444 1.17305 1.76177 1.49280 1.22489 0.85061 0.93655 1.00676 1.21651 0.94970 0.98038 0.97767 1.22070 1.03476 0.96120 0.95682 1.22095 0.86601 0.96082 1.02739 1.60718 1.09885 1.56319 1.04569 1.22026 0.99351 0.92193 0.93773 1.22197 0.94966 0.98881 1.02333 1.22595 0.83850 1.00299 0.94524 1.88173 1.17851 1.30370 1.93758 0.91991 0.96666 0.94422 0.90287 0.89376 0.92566 0.90811 0.90466 0.84662 0.90954 0.90772 0.91831 0.91513 0.94246 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.90 13.96 55.43 0.77 -26.13 16 2 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 3 Si 0.91 22.91 26.17 -169.99 -4.45 18.46 16 4 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.51 -15.09 9.70 -34.44 -0.33 -15.43 16 8 H 0.09 2.93 8.06 -52.49 -0.42 2.51 16 9 C 0.34 8.63 2.57 36.00 0.09 8.72 16 10 O -0.39 -9.46 7.81 -59.03 -0.46 -9.92 16 11 C 0.06 1.09 5.64 37.22 0.21 1.30 16 12 C -0.12 -1.96 0.53 -154.40 -0.08 -2.04 16 13 C -0.13 -2.10 4.67 -26.71 -0.12 -2.22 16 14 C 0.05 0.72 6.31 -3.82 -0.02 0.69 16 15 N -0.69 -7.96 6.86 -113.79 -0.78 -8.74 16 16 C 0.06 0.62 6.31 -3.82 -0.02 0.60 16 17 C -0.14 -1.74 4.87 -26.71 -0.13 -1.87 16 18 C 0.06 1.14 5.03 37.22 0.19 1.33 16 19 O -0.38 -8.92 10.02 -59.03 -0.59 -9.52 16 20 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 21 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.09 1.70 7.51 -51.93 -0.39 1.31 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.10 6.41 -51.93 -0.33 0.77 16 28 H 0.34 3.46 8.86 -39.29 -0.35 3.11 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.85 6.67 -51.93 -0.35 0.51 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.38 5.01 -51.93 -0.26 1.12 16 LS Contribution 259.84 15.07 3.92 3.92 Total: -1.00 -31.21 259.84 -6.94 -38.16 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.02 Total: 0.20 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.33 Total: -6.43 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.01 Total: -34.87 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -1.05 Total: -19.44 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.45 Total: 18.46 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.21 -6.94 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.753 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds