Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 O 1.42964 * 109.46410 * 300.04809 * 9 7 2 11 11 C 1.43120 * 113.75794 * 181.15762 * 10 9 7 12 12 C 1.53112 * 108.94215 * 57.78092 * 11 10 9 13 13 C 1.52992 * 109.57744 * 65.63013 * 12 11 10 14 14 C 1.53057 * 109.28166 * 177.65600 * 13 12 11 15 15 N 1.46846 * 109.50296 * 300.98548 * 14 13 12 16 16 C 1.46847 * 111.23807 * 61.79434 * 15 14 13 17 17 C 1.52977 * 109.61921 * 185.70664 * 12 11 10 18 18 C 1.53125 * 109.09427 * 305.69144 * 12 11 10 19 19 O 1.42969 * 109.46401 * 179.97438 * 9 7 2 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09003 * 109.46598 * 60.01938 * 9 7 2 22 22 H 1.09003 * 109.56100 * 297.94635 * 11 10 9 23 23 H 1.08999 * 109.56076 * 177.61856 * 11 10 9 24 24 H 1.09006 * 109.49587 * 297.59500 * 13 12 11 25 25 H 1.08993 * 109.50223 * 57.70732 * 13 12 11 26 26 H 1.08997 * 109.46687 * 180.97821 * 14 13 12 27 27 H 1.08998 * 109.46753 * 60.99432 * 14 13 12 28 28 H 1.00905 * 110.99450 * 297.67141 * 15 14 13 29 29 H 1.08996 * 109.46565 * 178.19579 * 16 15 14 30 30 H 1.09003 * 109.45269 * 58.22285 * 16 15 14 31 31 H 1.08993 * 109.50597 * 302.32571 * 17 12 11 32 32 H 1.08994 * 109.49941 * 62.44281 * 17 12 11 33 33 H 1.08994 * 109.56211 * 294.48571 * 18 12 11 34 34 H 1.08994 * 109.56288 * 174.15270 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 8 3.9830 -0.5163 -1.1792 11 6 5.4095 -0.4853 -1.2912 12 6 5.9394 -1.9218 -1.2909 13 6 5.4588 -2.6457 -2.5502 14 6 6.0401 -4.0615 -2.5721 15 7 7.5066 -3.9897 -2.5525 16 6 7.9912 -3.3425 -1.3267 17 6 7.4689 -1.9050 -1.2668 18 6 5.4147 -2.6491 -0.0498 19 8 3.9879 -2.5421 -0.0168 20 1 -0.4849 0.8401 0.0041 21 1 3.8785 -0.6827 0.8778 22 1 5.8302 0.0589 -0.4456 23 1 5.6919 0.0077 -2.2214 24 1 4.3701 -2.6993 -2.5459 25 1 5.7935 -2.1011 -3.4330 26 1 5.7136 -4.5741 -3.4769 27 1 5.6916 -4.6108 -1.6976 28 1 7.8565 -3.5180 -3.3731 29 1 9.0811 -3.3333 -1.3273 30 1 7.6332 -3.8956 -0.4583 31 1 7.8404 -1.3468 -2.1260 32 1 7.8131 -1.4309 -0.3477 33 1 5.8353 -2.1922 0.8460 34 1 5.7008 -3.6998 -0.0943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259736813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = -120.231202 kcal Electronic energy + Delta-G solvation = -17114.797216 eV Core-core repulsion = 14432.181299 eV Total energy + Delta-G solvation = -2682.615917 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.64194 -38.88587 -36.44790 -35.05697 -33.79253 -31.82974 -29.80302 -27.23198 -26.94389 -24.19178 -23.81642 -22.77792 -20.10661 -19.37597 -18.05272 -17.71370 -16.72596 -16.44410 -16.06640 -15.76724 -15.52530 -15.18528 -15.06060 -14.70106 -14.34195 -13.45547 -13.35618 -13.26138 -13.10657 -12.92040 -12.79797 -12.20103 -12.02122 -11.88240 -11.71478 -11.47535 -11.26617 -10.99339 -10.64906 -10.42038 -9.28870 -8.48902 -6.66350 1.28189 1.36187 1.44359 2.25192 2.65077 3.00237 3.32961 3.37541 3.50615 3.61863 3.85769 4.05146 4.18131 4.20179 4.34142 4.39546 4.44388 4.53269 4.61586 4.66969 4.81994 4.90127 4.97813 5.05346 5.08820 5.25269 5.29413 5.31759 5.79142 6.06410 6.32493 6.44148 6.52912 6.61975 7.09077 8.65520 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.049159 B = 0.008687 C = 0.008169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.448399 B = 3222.546840 C = 3426.630139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.037 3.963 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.535 4.535 8 H 0.043 0.957 9 C 0.353 3.647 10 O -0.415 6.415 11 C 0.045 3.955 12 C -0.119 4.119 13 C -0.130 4.130 14 C 0.063 3.937 15 N -0.683 5.683 16 C 0.057 3.943 17 C -0.134 4.134 18 C 0.055 3.945 19 O -0.409 6.409 20 H 0.277 0.723 21 H 0.017 0.983 22 H 0.050 0.950 23 H 0.102 0.898 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.348 0.652 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.904 -2.070 -3.585 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.165 4.165 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.572 4.572 8 H 0.062 0.938 9 C 0.260 3.740 10 O -0.337 6.337 11 C -0.032 4.032 12 C -0.119 4.119 13 C -0.170 4.170 14 C -0.066 4.066 15 N -0.312 5.312 16 C -0.073 4.073 17 C -0.173 4.173 18 C -0.021 4.021 19 O -0.330 6.330 20 H 0.086 0.914 21 H 0.034 0.966 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.166 0.834 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.573 -2.722 -3.462 19.088 hybrid contribution -0.462 1.680 0.048 1.743 sum 18.111 -1.042 -3.414 18.459 Atomic orbital electron populations 1.69996 1.08078 1.29185 1.49022 1.25765 0.95666 1.03245 0.91814 0.85328 0.78485 0.77281 0.79098 1.19439 1.20853 1.18163 1.20807 0.88683 0.94335 1.53361 0.93836 1.21059 0.91892 0.76976 0.84026 1.88297 1.21060 1.76002 1.48308 1.22918 0.81975 0.95933 1.02333 1.21622 0.97838 0.95885 0.96605 1.22021 1.00571 0.98053 0.96336 1.21947 0.87830 0.94326 1.02545 1.60699 1.08204 1.56766 1.05520 1.22104 1.00853 0.91148 0.93153 1.22160 0.91277 1.00077 1.03809 1.22960 0.80850 1.02078 0.96217 1.88114 1.21672 1.29227 1.94019 0.91370 0.96566 0.93185 0.88043 0.94088 0.91181 0.90013 0.91869 0.83355 0.88254 0.91380 0.90135 0.90258 0.92984 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.34 13.96 21.45 0.30 -58.04 16 2 C 0.04 2.21 5.47 84.66 0.46 2.68 16 3 Si 0.97 47.20 26.17 68.60 1.80 48.99 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -11.67 6.54 99.48 0.65 -11.02 16 7 C -0.54 -33.21 9.70 25.60 0.25 -32.97 16 8 H 0.04 3.01 8.06 -2.91 -0.02 2.98 16 9 C 0.35 18.29 2.57 71.23 0.18 18.47 16 10 O -0.41 -19.80 7.81 -126.23 -0.99 -20.79 16 11 C 0.04 1.55 5.64 72.02 0.41 1.96 16 12 C -0.12 -3.48 0.53 -52.11 -0.03 -3.51 16 13 C -0.13 -3.89 4.67 30.61 0.14 -3.75 16 14 C 0.06 1.56 6.31 86.33 0.54 2.11 16 15 N -0.68 -13.41 6.86 -513.93 -3.53 -16.94 16 16 C 0.06 1.01 6.31 86.33 0.54 1.55 16 17 C -0.13 -2.64 4.87 30.61 0.15 -2.49 16 18 C 0.06 1.87 5.03 72.02 0.36 2.24 16 19 O -0.41 -19.54 10.02 -126.23 -1.27 -20.80 16 20 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 21 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 24 H 0.04 1.61 7.51 -2.38 -0.02 1.59 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.74 6.41 -2.39 -0.02 1.72 16 28 H 0.35 5.71 8.86 -89.69 -0.79 4.91 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.32 6.67 -2.39 -0.02 1.30 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 3.18 5.01 -2.39 -0.01 3.17 16 Total: -1.00 -70.46 259.84 -0.42 -70.88 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.24 Total: 10.41 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 3.02 Total: -13.72 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -3.23 Total: -74.97 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -2.25 Total: -41.59 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.80 Total: 48.99 kcal Total: -70.46 -0.42 -70.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.350 kcal (2) G-P(sol) polarization free energy of solvation -70.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds