Wall clock time and date at job start Mon Mar 30 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99482 * 2 1 4 4 H 1.48508 * 109.46812 * 269.99974 * 3 2 1 5 5 H 1.48500 * 109.47592 * 29.99882 * 3 2 1 6 6 H 1.48495 * 109.47031 * 150.00294 * 3 2 1 7 7 C 1.37871 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99831 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00358 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47382 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.28942 * 307.12187 * 10 9 7 12 12 C 1.54452 * 110.31835 * 184.99673 * 10 9 7 13 13 O 1.44842 * 102.89796 * 219.30298 * 12 10 9 14 14 C 1.44390 * 103.23089 * 36.61730 * 13 12 10 15 15 H 1.08997 * 110.11554 * 80.01217 * 14 13 12 16 16 C 1.52997 * 110.11143 * 201.60000 * 14 13 12 17 17 H 1.09000 * 109.87941 * 178.12186 * 16 14 13 18 18 C 1.54321 * 109.89167 * 299.32235 * 16 14 13 19 19 C 1.55422 * 103.04810 * 141.68957 * 18 16 14 20 20 C 1.54908 * 101.52379 * 324.36667 * 19 18 16 21 21 N 1.47448 * 109.89040 * 57.09263 * 16 14 13 22 22 O 1.43787 * 106.17075 * 320.77564 * 14 13 12 23 23 H 0.97004 * 120.00828 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46884 * 59.99578 * 9 7 2 25 25 H 1.09008 * 109.46807 * 300.00139 * 9 7 2 26 26 H 1.08998 * 110.72515 * 100.95517 * 12 10 9 27 27 H 1.08996 * 110.73317 * 337.65511 * 12 10 9 28 28 H 1.09004 * 110.70290 * 260.07710 * 18 16 14 29 29 H 1.09005 * 110.69934 * 23.12828 * 18 16 14 30 30 H 1.08998 * 111.10859 * 206.29820 * 19 18 16 31 31 H 1.08998 * 111.00401 * 82.38939 * 19 18 16 32 32 H 1.09002 * 110.37460 * 278.18013 * 20 19 18 33 33 H 1.08999 * 110.37548 * 155.95084 * 20 19 18 34 34 H 1.00894 * 111.00079 * 3.84944 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 1 3.5656 -3.1986 0.8148 12 6 5.5607 -2.6610 0.1267 13 8 5.9420 -3.7319 -0.7710 14 6 5.0043 -3.5990 -1.8609 15 1 5.3227 -2.8034 -2.5345 16 6 4.8936 -4.9207 -2.6237 17 1 4.1605 -4.8260 -3.4247 18 6 6.2687 -5.3060 -3.2087 19 6 6.3095 -6.8485 -3.0223 20 6 5.5655 -7.0171 -1.6741 21 7 4.4931 -5.9997 -1.7021 22 8 3.7398 -3.2658 -1.2630 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6806 0.8905 25 1 3.8752 -0.6794 -0.8895 26 1 5.8599 -2.8900 1.1494 27 1 5.9899 -1.7135 -0.1990 28 1 6.3251 -5.0440 -4.2653 29 1 7.0729 -4.8264 -2.6507 30 1 7.3359 -7.2080 -2.9494 31 1 5.7768 -7.3536 -3.8280 32 1 6.2432 -6.8313 -0.8408 33 1 5.1381 -8.0170 -1.5989 34 1 4.3140 -5.6377 -0.7775 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259906846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:57 Heat of formation + Delta-G solvation = -94.315464 kcal Electronic energy + Delta-G solvation = -16392.472803 eV Core-core repulsion = 13710.980677 eV Total energy + Delta-G solvation = -2681.492127 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27673 -37.85692 -34.68727 -33.15767 -31.43264 -30.03490 -29.47617 -26.98593 -24.02894 -23.00973 -21.10839 -20.45704 -20.30222 -17.21719 -16.80161 -16.23135 -16.08756 -15.31057 -14.93586 -14.52743 -13.68612 -13.36828 -13.20203 -12.84604 -12.38453 -12.33115 -12.06648 -11.97826 -11.70666 -11.51560 -11.21032 -11.16099 -10.75427 -10.55490 -10.29896 -9.92579 -9.70845 -9.32627 -9.00240 -8.56060 -8.22769 -6.03969 -4.02020 3.27837 3.35104 3.35769 3.86705 4.06315 4.42086 4.43274 4.70501 4.81645 5.04059 5.10617 5.22976 5.27904 5.33371 5.44083 5.51176 5.57729 5.69412 5.76336 5.85384 5.88619 5.92342 6.07508 6.23073 6.29532 6.52281 6.88535 7.02206 7.14290 7.53564 7.54472 7.74056 8.52570 9.03294 9.56287 11.09542 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.050951 B = 0.006423 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.417117 B = 4358.050687 C = 4532.303436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.077 0.923 9 C -0.022 4.022 10 C 0.069 3.931 11 H 0.088 0.912 12 C 0.014 3.986 13 O -0.387 6.387 14 C 0.206 3.794 15 H 0.070 0.930 16 C 0.083 3.917 17 H 0.100 0.900 18 C -0.136 4.136 19 C -0.126 4.126 20 C 0.045 3.955 21 N -0.668 5.668 22 O -0.354 6.354 23 H 0.263 0.737 24 H 0.030 0.970 25 H 0.018 0.982 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.427 -9.179 -3.500 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.011 3.989 11 H 0.106 0.894 12 C -0.062 4.062 13 O -0.308 6.308 14 C 0.109 3.891 15 H 0.088 0.912 16 C -0.028 4.028 17 H 0.118 0.882 18 C -0.174 4.174 19 C -0.164 4.164 20 C -0.084 4.084 21 N -0.299 5.299 22 O -0.274 6.274 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.805 -9.597 -4.014 17.286 hybrid contribution 1.079 1.750 0.560 2.131 sum 14.884 -7.848 -3.454 17.177 Atomic orbital electron populations 1.69907 1.06221 1.26802 1.51020 1.25008 0.94744 0.98945 0.94741 0.86824 0.80219 0.83962 0.78487 1.20302 1.21268 1.19243 1.20981 0.88685 0.94774 1.50489 0.90539 1.19931 0.98728 0.90277 0.96965 1.23629 0.91878 0.97277 0.86077 0.89405 1.24482 0.95823 0.90736 0.95191 1.89308 1.54897 1.52708 1.33846 1.24809 0.78222 0.96700 0.89327 0.91250 1.22512 0.96545 0.88259 0.95454 0.88173 1.22831 0.96996 0.96304 1.01304 1.22701 1.00223 0.95641 0.97861 1.22825 0.92340 0.96672 0.96596 1.61963 1.40715 1.12433 1.14830 1.89083 1.25628 1.78924 1.33811 0.92711 0.95242 0.96383 0.88127 0.91068 0.90782 0.90558 0.91072 0.90825 0.94020 0.90735 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.51 -14.67 9.55 -34.44 -0.33 -15.00 16 8 H 0.08 2.42 7.99 -52.48 -0.42 2.00 16 9 C -0.02 -0.51 3.66 -27.89 -0.10 -0.61 16 10 C 0.07 1.36 3.65 -25.97 -0.09 1.27 16 11 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 12 C 0.01 0.22 7.36 37.92 0.28 0.50 16 13 O -0.39 -6.19 10.28 -59.28 -0.61 -6.80 16 14 C 0.21 3.43 3.40 37.16 0.13 3.56 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.08 1.21 3.63 -66.72 -0.24 0.97 16 17 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 18 C -0.14 -1.59 6.39 -24.75 -0.16 -1.75 16 19 C -0.13 -1.32 7.10 -24.44 -0.17 -1.50 16 20 C 0.04 0.54 7.56 -2.30 -0.02 0.53 16 21 N -0.67 -10.06 7.25 -103.81 -0.75 -10.82 16 22 O -0.35 -7.38 10.34 -59.28 -0.61 -7.99 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 25 H 0.02 0.42 7.57 -51.92 -0.39 0.03 16 26 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.07 7.86 -51.93 -0.41 0.67 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.93 7.29 -51.93 -0.38 0.55 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.35 5.71 7.54 -39.30 -0.30 5.42 16 LS Contribution 274.85 15.07 4.14 4.14 Total: -1.00 -31.33 274.85 -7.78 -39.10 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.24 Total: 2.91 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.81 Total: -10.17 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.02 Total: -38.05 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -1.22 Total: -14.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.33 -7.78 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259906846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.211 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds