Wall clock time and date at job start Mon Mar 30 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99482 * 2 1 4 4 H 1.48508 * 109.46812 * 269.99974 * 3 2 1 5 5 H 1.48500 * 109.47592 * 29.99882 * 3 2 1 6 6 H 1.48495 * 109.47031 * 150.00294 * 3 2 1 7 7 C 1.37871 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99831 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00358 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47382 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.28942 * 307.12187 * 10 9 7 12 12 C 1.54452 * 110.31835 * 184.99673 * 10 9 7 13 13 O 1.44842 * 102.89796 * 219.30298 * 12 10 9 14 14 C 1.44390 * 103.23089 * 36.61730 * 13 12 10 15 15 H 1.08997 * 110.11554 * 80.01217 * 14 13 12 16 16 C 1.52997 * 110.11143 * 201.60000 * 14 13 12 17 17 H 1.09000 * 109.87941 * 178.12186 * 16 14 13 18 18 C 1.54321 * 109.89167 * 299.32235 * 16 14 13 19 19 C 1.55422 * 103.04810 * 141.68957 * 18 16 14 20 20 C 1.54908 * 101.52379 * 324.36667 * 19 18 16 21 21 N 1.47448 * 109.89040 * 57.09263 * 16 14 13 22 22 O 1.43787 * 106.17075 * 320.77564 * 14 13 12 23 23 H 0.97004 * 120.00828 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46884 * 59.99578 * 9 7 2 25 25 H 1.09008 * 109.46807 * 300.00139 * 9 7 2 26 26 H 1.08998 * 110.72515 * 100.95517 * 12 10 9 27 27 H 1.08996 * 110.73317 * 337.65511 * 12 10 9 28 28 H 1.09004 * 110.70290 * 260.07710 * 18 16 14 29 29 H 1.09005 * 110.69934 * 23.12828 * 18 16 14 30 30 H 1.08998 * 111.10859 * 206.29820 * 19 18 16 31 31 H 1.08998 * 111.00401 * 82.38939 * 19 18 16 32 32 H 1.09002 * 110.37460 * 278.18013 * 20 19 18 33 33 H 1.08999 * 110.37548 * 155.95084 * 20 19 18 34 34 H 1.00894 * 111.00079 * 3.84944 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 1 3.5656 -3.1986 0.8148 12 6 5.5607 -2.6610 0.1267 13 8 5.9420 -3.7319 -0.7710 14 6 5.0043 -3.5990 -1.8609 15 1 5.3227 -2.8034 -2.5345 16 6 4.8936 -4.9207 -2.6237 17 1 4.1605 -4.8260 -3.4247 18 6 6.2687 -5.3060 -3.2087 19 6 6.3095 -6.8485 -3.0223 20 6 5.5655 -7.0171 -1.6741 21 7 4.4931 -5.9997 -1.7021 22 8 3.7398 -3.2658 -1.2630 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6806 0.8905 25 1 3.8752 -0.6794 -0.8895 26 1 5.8599 -2.8900 1.1494 27 1 5.9899 -1.7135 -0.1990 28 1 6.3251 -5.0440 -4.2653 29 1 7.0729 -4.8264 -2.6507 30 1 7.3359 -7.2080 -2.9494 31 1 5.7768 -7.3536 -3.8280 32 1 6.2432 -6.8313 -0.8408 33 1 5.1381 -8.0170 -1.5989 34 1 4.3140 -5.6377 -0.7775 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259906846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:56 Heat of formation + Delta-G solvation = -117.926506 kcal Electronic energy + Delta-G solvation = -16393.496655 eV Core-core repulsion = 13710.980677 eV Total energy + Delta-G solvation = -2682.515978 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.61229 -38.95660 -36.16457 -35.12965 -33.16941 -31.03466 -30.82588 -28.60252 -25.24997 -24.77452 -22.26923 -21.92718 -21.44180 -18.97097 -18.45145 -17.57649 -17.28171 -16.64261 -16.40684 -16.06533 -15.17736 -14.89879 -14.60586 -14.18411 -13.90816 -13.69546 -13.51830 -13.33024 -13.23527 -12.77865 -12.50716 -12.25599 -12.07352 -11.99304 -11.71327 -11.64648 -11.40413 -11.17121 -10.78938 -10.56790 -9.36283 -8.28358 -6.33124 1.35184 1.37555 1.48456 2.35337 2.57162 2.80674 3.07597 3.33513 3.65772 3.73379 3.82372 3.94867 4.00317 4.12381 4.27861 4.36020 4.51330 4.57694 4.64206 4.66116 4.90226 4.94890 4.95428 5.02975 5.06253 5.15811 5.34456 5.36158 5.59874 5.96346 6.12221 6.27843 6.33287 6.73893 7.29394 8.89173 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.050951 B = 0.006423 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.417117 B = 4358.050687 C = 4532.303436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.523 4.523 8 H 0.024 0.976 9 C -0.018 4.018 10 C 0.065 3.935 11 H 0.076 0.924 12 C 0.025 3.975 13 O -0.381 6.381 14 C 0.203 3.797 15 H 0.077 0.923 16 C 0.079 3.921 17 H 0.089 0.911 18 C -0.128 4.128 19 C -0.119 4.119 20 C 0.041 3.959 21 N -0.685 5.685 22 O -0.389 6.389 23 H 0.266 0.734 24 H 0.048 0.952 25 H 0.022 0.978 26 H 0.131 0.869 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.541 -8.676 -3.746 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.160 1.160 7 C -0.561 4.561 8 H 0.042 0.958 9 C -0.055 4.055 10 C 0.007 3.993 11 H 0.094 0.906 12 C -0.051 4.051 13 O -0.302 6.302 14 C 0.107 3.893 15 H 0.095 0.905 16 C -0.032 4.032 17 H 0.106 0.894 18 C -0.167 4.167 19 C -0.157 4.157 20 C -0.087 4.087 21 N -0.316 5.316 22 O -0.310 6.310 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.148 0.852 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.951 -9.125 -4.264 19.717 hybrid contribution 0.015 1.482 0.624 1.608 sum 16.966 -7.643 -3.640 18.961 Atomic orbital electron populations 1.70088 1.08521 1.28159 1.52714 1.26086 0.95680 1.03705 0.94152 0.85602 0.79751 0.77818 0.79090 1.19566 1.20944 1.15986 1.21281 0.91763 0.92914 1.50167 0.95776 1.19866 0.94889 0.93081 0.97678 1.23515 0.95056 0.94929 0.85767 0.90563 1.24481 0.92197 0.91546 0.96865 1.89310 1.54278 1.52927 1.33639 1.25004 0.76933 0.97956 0.89387 0.90530 1.22567 0.98233 0.87408 0.94946 0.89353 1.22811 0.94667 0.97123 1.02088 1.22717 1.01373 0.94740 0.96827 1.22942 0.91875 0.96139 0.97793 1.61979 1.42432 1.13056 1.14129 1.89060 1.28425 1.79120 1.34379 0.92527 0.93360 0.95975 0.85153 0.89536 0.88992 0.90666 0.88771 0.90269 0.93940 0.89959 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.28 13.96 21.44 0.30 -60.99 16 2 C 0.00 0.00 5.47 84.65 0.46 0.46 16 3 Si 0.95 43.84 27.47 68.60 1.88 45.73 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.52 -30.91 9.55 25.60 0.24 -30.66 16 8 H 0.02 1.61 7.99 -2.91 -0.02 1.59 16 9 C -0.02 -0.82 3.66 29.85 0.11 -0.71 16 10 C 0.06 2.55 3.65 31.09 0.11 2.66 16 11 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 12 C 0.03 0.73 7.36 72.48 0.53 1.26 16 13 O -0.38 -11.36 10.28 -125.98 -1.30 -12.65 16 14 C 0.20 6.58 3.40 71.98 0.25 6.83 16 15 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 16 C 0.08 2.25 3.63 45.26 0.16 2.41 16 17 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 18 C -0.13 -2.69 6.39 31.88 0.20 -2.49 16 19 C -0.12 -2.16 7.10 32.08 0.23 -1.94 16 20 C 0.04 0.93 7.56 86.77 0.66 1.59 16 21 N -0.69 -20.41 7.25 -482.35 -3.50 -23.91 16 22 O -0.39 -16.44 10.34 -125.98 -1.30 -17.74 16 23 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 24 H 0.05 2.04 7.20 -2.38 -0.02 2.02 16 25 H 0.02 1.00 7.57 -2.38 -0.02 0.98 16 26 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.09 2.27 7.86 -2.39 -0.02 2.25 16 28 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.07 1.61 7.29 -2.38 -0.02 1.60 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.34 11.18 7.54 -89.70 -0.68 10.50 16 Total: -1.00 -70.04 274.85 -0.60 -70.64 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.35 Total: 19.50 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 2.96 Total: -20.58 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -3.20 Total: -84.89 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -2.60 Total: -30.39 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Total: -70.04 -0.60 -70.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259906846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.289 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds