Wall clock time and date at job start Mon Mar 30 2020 04:00:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.47048 * 2 1
4 4 C 1.50702 * 109.47196 * 119.99702 * 2 1 3
5 5 H 1.07993 * 119.99768 * 124.53272 * 4 2 1
6 6 C 1.37878 * 119.99631 * 304.53487 * 4 2 1
7 7 N 1.31522 * 119.99714 * 152.59477 * 6 4 2
8 8 Si 1.86800 * 120.00407 * 332.58906 * 6 4 2
9 9 H 1.48503 * 109.47181 * 180.02562 * 8 6 4
10 10 H 1.48495 * 109.47306 * 300.00740 * 8 6 4
11 11 H 1.48505 * 109.46917 * 60.00283 * 8 6 4
12 12 N 1.46497 * 109.47192 * 240.00094 * 2 1 3
13 13 C 1.34770 * 120.00293 * 59.99677 * 12 2 1
14 14 O 1.21282 * 120.00316 * 0.02562 * 13 12 2
15 15 C 1.50706 * 119.99946 * 180.02562 * 13 12 2
16 16 H 1.08995 * 109.86906 * 304.29982 * 15 13 12
17 17 C 1.54096 * 109.87838 * 65.30764 * 15 13 12
18 18 C 1.54809 * 104.18715 * 121.45018 * 17 15 13
19 19 C 1.54992 * 102.09276 * 20.88386 * 18 17 15
20 20 O 1.43748 * 109.87662 * 183.29294 * 15 13 12
21 21 H 1.09006 * 109.46875 * 291.12365 * 1 2 3
22 22 H 1.09005 * 109.46858 * 51.11824 * 1 2 3
23 23 H 1.08997 * 109.47408 * 171.12079 * 1 2 3
24 24 H 1.09001 * 109.46896 * 172.31831 * 3 2 1
25 25 H 1.09007 * 109.46934 * 292.31183 * 3 2 1
26 26 H 1.08993 * 109.47403 * 52.31184 * 3 2 1
27 27 H 0.96998 * 119.99931 * 354.83861 * 7 6 4
28 28 H 0.97006 * 119.99774 * 240.00047 * 12 2 1
29 29 H 1.09001 * 110.49168 * 240.12892 * 17 15 13
30 30 H 1.09000 * 110.49021 * 2.77716 * 17 15 13
31 31 H 1.09003 * 110.90733 * 139.07619 * 18 17 15
32 32 H 1.08992 * 110.91443 * 262.64861 * 18 17 15
33 33 H 1.08998 * 110.62204 * 81.47477 * 19 18 17
34 34 H 1.09005 * 110.62347 * 204.31740 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7103 1.2305
5 1 2.7122 -1.5438 1.1331
6 6 1.6239 -0.2962 2.4806
7 7 1.5841 -1.1537 3.4770
8 14 1.1273 1.4829 2.7591
9 1 0.7323 1.6702 4.1784
10 1 2.2738 2.3722 2.4434
11 1 -0.0187 1.8208 1.8771
12 7 2.0183 -0.6906 -1.1962
13 6 1.6928 -0.2302 -2.4202
14 8 0.9958 0.7561 -2.5316
15 6 2.1947 -0.9410 -3.6507
16 1 3.2819 -1.0122 -3.6198
17 6 1.5792 -2.3515 -3.7287
18 6 0.8330 -2.3655 -5.0850
19 6 1.5340 -1.2161 -5.8530
20 8 1.7849 -0.2269 -4.8290
21 1 -0.3633 0.3704 0.9587
22 1 -0.3633 0.6451 -0.8000
23 1 -0.3634 -1.0153 -0.1586
24 1 3.1213 1.4456 0.1374
25 1 1.7932 1.9151 -0.9508
26 1 1.5688 1.9945 0.8132
27 1 1.7695 -2.0923 3.3168
28 1 2.5760 -1.4793 -1.1071
29 1 2.3615 -3.1105 -3.7158
30 1 0.8802 -2.5088 -2.9072
31 1 0.9737 -3.3176 -5.5967
32 1 -0.2271 -2.1526 -4.9481
33 1 2.4718 -1.5613 -6.2884
34 1 0.8783 -0.8148 -6.6258
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259987955.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:00:32
Heat of formation + Delta-G solvation = -74.048905 kcal
Electronic energy + Delta-G solvation = -16622.368273 eV
Core-core repulsion = 13941.754971 eV
Total energy + Delta-G solvation = -2680.613303 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.01731 -38.25328 -35.40127 -32.71360 -32.03396 -30.93371 -28.90368 -26.17075
-24.61656 -23.64788 -21.75354 -20.74798 -18.88833 -17.78074 -16.77413 -16.35911
-15.61127 -14.91476 -14.59408 -13.93403 -13.86397 -13.66947 -13.00195 -12.54214
-12.34590 -12.21734 -11.84453 -11.79883 -11.56930 -11.42118 -11.31137 -10.94956
-10.31763 -10.16925 -9.98827 -9.89170 -9.35430 -9.08511 -8.62963 -8.28530
-8.05618 -6.62936 -4.21182 3.20614 3.37963 3.43863 3.52321 3.63649
4.23018 4.42247 4.52206 4.78260 4.86017 5.07037 5.13118 5.17054
5.48130 5.57440 5.59078 5.66416 5.87170 5.98680 6.25845 6.46179
6.52265 6.73549 6.77129 6.85786 6.96394 7.16706 7.46156 7.48859
7.73802 8.22674 8.56031 8.69519 9.02213 9.43146 10.74598
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.051658 B = 0.007483 C = 0.007000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 541.891774 B = 3740.958493 C = 3999.094079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.276 3.724
3 C -0.169 4.169
4 C -0.625 4.625
5 H 0.064 0.936
6 C 0.050 3.950
7 N -0.883 5.883
8 Si 1.045 2.955
9 H -0.297 1.297
10 H -0.285 1.285
11 H -0.273 1.273
12 N -0.699 5.699
13 C 0.502 3.498
14 O -0.531 6.531
15 C 0.057 3.943
16 H 0.088 0.912
17 C -0.147 4.147
18 C -0.153 4.153
19 C 0.043 3.957
20 O -0.348 6.348
21 H 0.058 0.942
22 H 0.047 0.953
23 H 0.039 0.961
24 H 0.048 0.952
25 H 0.056 0.944
26 H 0.045 0.955
27 H 0.272 0.728
28 H 0.392 0.608
29 H 0.083 0.917
30 H 0.085 0.915
31 H 0.081 0.919
32 H 0.079 0.921
33 H 0.060 0.940
34 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.886 -3.303 -14.280 14.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.191 3.809
3 C -0.226 4.226
4 C -0.661 4.661
5 H 0.082 0.918
6 C -0.158 4.158
7 N -0.514 5.514
8 Si 0.877 3.123
9 H -0.224 1.224
10 H -0.212 1.212
11 H -0.200 1.200
12 N -0.349 5.349
13 C 0.286 3.714
14 O -0.408 6.408
15 C -0.005 4.005
16 H 0.106 0.894
17 C -0.185 4.185
18 C -0.191 4.191
19 C -0.034 4.034
20 O -0.266 6.266
21 H 0.077 0.923
22 H 0.066 0.934
23 H 0.058 0.942
24 H 0.067 0.933
25 H 0.075 0.925
26 H 0.063 0.937
27 H 0.082 0.918
28 H 0.225 0.775
29 H 0.102 0.898
30 H 0.104 0.896
31 H 0.099 0.901
32 H 0.097 0.903
33 H 0.078 0.922
34 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -0.107 -1.307 -13.171 13.236
hybrid contribution 0.930 -1.805 -1.115 2.316
sum 0.822 -3.111 -14.286 14.644
Atomic orbital electron populations
1.22465 0.97721 1.00207 1.01096 1.18336 0.90793 0.89250 0.82474
1.22616 1.00618 0.98788 1.00620 1.21837 1.33936 1.19591 0.90778
0.91841 1.25601 0.93213 1.04873 0.92124 1.70872 1.40955 1.04404
1.35176 0.84280 0.77312 0.76114 0.74598 1.22435 1.21230 1.20038
1.46332 1.52142 1.31169 1.05222 1.20296 0.81470 0.85150 0.84471
1.90617 1.37699 1.25949 1.86536 1.22716 0.99351 0.91505 0.86911
0.89450 1.22934 1.00848 0.95565 0.99146 1.23123 1.01005 0.99466
0.95465 1.23623 0.99122 0.88887 0.91725 1.89051 1.88450 1.29273
1.19790 0.92279 0.93398 0.94157 0.93263 0.92505 0.93656 0.91823
0.77467 0.89837 0.89612 0.90053 0.90270 0.92171 0.88857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.77 7.92 37.16 0.29 -3.47 16
2 C 0.28 6.63 0.78 -132.97 -0.10 6.53 16
3 C -0.17 -4.02 7.53 37.16 0.28 -3.74 16
4 C -0.62 -16.70 8.59 -34.44 -0.30 -17.00 16
5 H 0.06 1.76 7.85 -52.49 -0.41 1.34 16
6 C 0.05 1.41 5.07 -17.82 -0.09 1.32 16
7 N -0.88 -25.95 13.70 55.43 0.76 -25.20 16
8 Si 1.05 25.64 23.29 -169.99 -3.96 21.68 16
9 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16
10 H -0.28 -6.70 6.77 56.52 0.38 -6.32 16
11 H -0.27 -6.38 5.66 56.52 0.32 -6.06 16
12 N -0.70 -14.22 5.07 -48.68 -0.25 -14.47 16
13 C 0.50 9.96 6.34 -10.99 -0.07 9.89 16
14 O -0.53 -12.55 12.82 -14.01 -0.18 -12.73 16
15 C 0.06 0.86 3.84 -27.31 -0.10 0.76 16
16 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
17 C -0.15 -1.77 6.62 -25.21 -0.17 -1.93 16
18 C -0.15 -1.58 7.16 -24.73 -0.18 -1.76 16
19 C 0.04 0.48 7.72 38.21 0.29 0.78 16
20 O -0.35 -5.69 10.75 -54.80 -0.59 -6.28 16
21 H 0.06 1.45 4.44 -51.93 -0.23 1.22 16
22 H 0.05 1.14 6.45 -51.93 -0.33 0.81 16
23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16
24 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16
25 H 0.06 1.35 5.99 -51.93 -0.31 1.04 16
26 H 0.05 1.08 2.88 -51.93 -0.15 0.93 16
27 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16
28 H 0.39 7.06 8.33 -40.82 -0.34 6.72 16
29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
30 H 0.09 1.15 7.69 -51.93 -0.40 0.76 16
31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 264.20 15.07 3.98 3.98
Total: -1.00 -31.85 264.20 -5.18 -37.03
By element:
Atomic # 1 Polarization: 9.41 SS G_CDS: -4.81 Total: 4.60 kcal
Atomic # 6 Polarization: -8.49 SS G_CDS: -0.14 Total: -8.63 kcal
Atomic # 7 Polarization: -40.18 SS G_CDS: 0.51 Total: -39.67 kcal
Atomic # 8 Polarization: -18.24 SS G_CDS: -0.77 Total: -19.01 kcal
Atomic # 14 Polarization: 25.64 SS G_CDS: -3.96 Total: 21.68 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -31.85 -5.18 -37.03 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259987955.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.015 kcal
(2) G-P(sol) polarization free energy of solvation -31.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.049 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds