Wall clock time and date at job start Mon Mar 30 2020 04:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47048 * 2 1 4 4 C 1.50702 * 109.47196 * 119.99702 * 2 1 3 5 5 H 1.07993 * 119.99768 * 124.53272 * 4 2 1 6 6 C 1.37878 * 119.99631 * 304.53487 * 4 2 1 7 7 N 1.31522 * 119.99714 * 152.59477 * 6 4 2 8 8 Si 1.86800 * 120.00407 * 332.58906 * 6 4 2 9 9 H 1.48503 * 109.47181 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47306 * 300.00740 * 8 6 4 11 11 H 1.48505 * 109.46917 * 60.00283 * 8 6 4 12 12 N 1.46497 * 109.47192 * 240.00094 * 2 1 3 13 13 C 1.34770 * 120.00293 * 59.99677 * 12 2 1 14 14 O 1.21282 * 120.00316 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99946 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.86906 * 304.29982 * 15 13 12 17 17 C 1.54096 * 109.87838 * 65.30764 * 15 13 12 18 18 C 1.54809 * 104.18715 * 121.45018 * 17 15 13 19 19 C 1.54992 * 102.09276 * 20.88386 * 18 17 15 20 20 O 1.43748 * 109.87662 * 183.29294 * 15 13 12 21 21 H 1.09006 * 109.46875 * 291.12365 * 1 2 3 22 22 H 1.09005 * 109.46858 * 51.11824 * 1 2 3 23 23 H 1.08997 * 109.47408 * 171.12079 * 1 2 3 24 24 H 1.09001 * 109.46896 * 172.31831 * 3 2 1 25 25 H 1.09007 * 109.46934 * 292.31183 * 3 2 1 26 26 H 1.08993 * 109.47403 * 52.31184 * 3 2 1 27 27 H 0.96998 * 119.99931 * 354.83861 * 7 6 4 28 28 H 0.97006 * 119.99774 * 240.00047 * 12 2 1 29 29 H 1.09001 * 110.49168 * 240.12892 * 17 15 13 30 30 H 1.09000 * 110.49021 * 2.77716 * 17 15 13 31 31 H 1.09003 * 110.90733 * 139.07619 * 18 17 15 32 32 H 1.08992 * 110.91443 * 262.64861 * 18 17 15 33 33 H 1.08998 * 110.62204 * 81.47477 * 19 18 17 34 34 H 1.09005 * 110.62347 * 204.31740 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.7122 -1.5438 1.1331 6 6 1.6239 -0.2962 2.4806 7 7 1.5841 -1.1537 3.4770 8 14 1.1273 1.4829 2.7591 9 1 0.7323 1.6702 4.1784 10 1 2.2738 2.3722 2.4434 11 1 -0.0187 1.8208 1.8771 12 7 2.0183 -0.6906 -1.1962 13 6 1.6928 -0.2302 -2.4202 14 8 0.9958 0.7561 -2.5316 15 6 2.1947 -0.9410 -3.6507 16 1 3.2819 -1.0122 -3.6198 17 6 1.5792 -2.3515 -3.7287 18 6 0.8330 -2.3655 -5.0850 19 6 1.5340 -1.2161 -5.8530 20 8 1.7849 -0.2269 -4.8290 21 1 -0.3633 0.3704 0.9587 22 1 -0.3633 0.6451 -0.8000 23 1 -0.3634 -1.0153 -0.1586 24 1 3.1213 1.4456 0.1374 25 1 1.7932 1.9151 -0.9508 26 1 1.5688 1.9945 0.8132 27 1 1.7695 -2.0923 3.3168 28 1 2.5760 -1.4793 -1.1071 29 1 2.3615 -3.1105 -3.7158 30 1 0.8802 -2.5088 -2.9072 31 1 0.9737 -3.3176 -5.5967 32 1 -0.2271 -2.1526 -4.9481 33 1 2.4718 -1.5613 -6.2884 34 1 0.8783 -0.8148 -6.6258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259987955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:32 Heat of formation + Delta-G solvation = -74.048905 kcal Electronic energy + Delta-G solvation = -16622.368273 eV Core-core repulsion = 13941.754971 eV Total energy + Delta-G solvation = -2680.613303 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01731 -38.25328 -35.40127 -32.71360 -32.03396 -30.93371 -28.90368 -26.17075 -24.61656 -23.64788 -21.75354 -20.74798 -18.88833 -17.78074 -16.77413 -16.35911 -15.61127 -14.91476 -14.59408 -13.93403 -13.86397 -13.66947 -13.00195 -12.54214 -12.34590 -12.21734 -11.84453 -11.79883 -11.56930 -11.42118 -11.31137 -10.94956 -10.31763 -10.16925 -9.98827 -9.89170 -9.35430 -9.08511 -8.62963 -8.28530 -8.05618 -6.62936 -4.21182 3.20614 3.37963 3.43863 3.52321 3.63649 4.23018 4.42247 4.52206 4.78260 4.86017 5.07037 5.13118 5.17054 5.48130 5.57440 5.59078 5.66416 5.87170 5.98680 6.25845 6.46179 6.52265 6.73549 6.77129 6.85786 6.96394 7.16706 7.46156 7.48859 7.73802 8.22674 8.56031 8.69519 9.02213 9.43146 10.74598 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.051658 B = 0.007483 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.891774 B = 3740.958493 C = 3999.094079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.276 3.724 3 C -0.169 4.169 4 C -0.625 4.625 5 H 0.064 0.936 6 C 0.050 3.950 7 N -0.883 5.883 8 Si 1.045 2.955 9 H -0.297 1.297 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.502 3.498 14 O -0.531 6.531 15 C 0.057 3.943 16 H 0.088 0.912 17 C -0.147 4.147 18 C -0.153 4.153 19 C 0.043 3.957 20 O -0.348 6.348 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -3.303 -14.280 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.191 3.809 3 C -0.226 4.226 4 C -0.661 4.661 5 H 0.082 0.918 6 C -0.158 4.158 7 N -0.514 5.514 8 Si 0.877 3.123 9 H -0.224 1.224 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.349 5.349 13 C 0.286 3.714 14 O -0.408 6.408 15 C -0.005 4.005 16 H 0.106 0.894 17 C -0.185 4.185 18 C -0.191 4.191 19 C -0.034 4.034 20 O -0.266 6.266 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.107 -1.307 -13.171 13.236 hybrid contribution 0.930 -1.805 -1.115 2.316 sum 0.822 -3.111 -14.286 14.644 Atomic orbital electron populations 1.22465 0.97721 1.00207 1.01096 1.18336 0.90793 0.89250 0.82474 1.22616 1.00618 0.98788 1.00620 1.21837 1.33936 1.19591 0.90778 0.91841 1.25601 0.93213 1.04873 0.92124 1.70872 1.40955 1.04404 1.35176 0.84280 0.77312 0.76114 0.74598 1.22435 1.21230 1.20038 1.46332 1.52142 1.31169 1.05222 1.20296 0.81470 0.85150 0.84471 1.90617 1.37699 1.25949 1.86536 1.22716 0.99351 0.91505 0.86911 0.89450 1.22934 1.00848 0.95565 0.99146 1.23123 1.01005 0.99466 0.95465 1.23623 0.99122 0.88887 0.91725 1.89051 1.88450 1.29273 1.19790 0.92279 0.93398 0.94157 0.93263 0.92505 0.93656 0.91823 0.77467 0.89837 0.89612 0.90053 0.90270 0.92171 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 7.92 37.16 0.29 -3.47 16 2 C 0.28 6.63 0.78 -132.97 -0.10 6.53 16 3 C -0.17 -4.02 7.53 37.16 0.28 -3.74 16 4 C -0.62 -16.70 8.59 -34.44 -0.30 -17.00 16 5 H 0.06 1.76 7.85 -52.49 -0.41 1.34 16 6 C 0.05 1.41 5.07 -17.82 -0.09 1.32 16 7 N -0.88 -25.95 13.70 55.43 0.76 -25.20 16 8 Si 1.05 25.64 23.29 -169.99 -3.96 21.68 16 9 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -6.70 6.77 56.52 0.38 -6.32 16 11 H -0.27 -6.38 5.66 56.52 0.32 -6.06 16 12 N -0.70 -14.22 5.07 -48.68 -0.25 -14.47 16 13 C 0.50 9.96 6.34 -10.99 -0.07 9.89 16 14 O -0.53 -12.55 12.82 -14.01 -0.18 -12.73 16 15 C 0.06 0.86 3.84 -27.31 -0.10 0.76 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.15 -1.77 6.62 -25.21 -0.17 -1.93 16 18 C -0.15 -1.58 7.16 -24.73 -0.18 -1.76 16 19 C 0.04 0.48 7.72 38.21 0.29 0.78 16 20 O -0.35 -5.69 10.75 -54.80 -0.59 -6.28 16 21 H 0.06 1.45 4.44 -51.93 -0.23 1.22 16 22 H 0.05 1.14 6.45 -51.93 -0.33 0.81 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 25 H 0.06 1.35 5.99 -51.93 -0.31 1.04 16 26 H 0.05 1.08 2.88 -51.93 -0.15 0.93 16 27 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 28 H 0.39 7.06 8.33 -40.82 -0.34 6.72 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.15 7.69 -51.93 -0.40 0.76 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 264.20 15.07 3.98 3.98 Total: -1.00 -31.85 264.20 -5.18 -37.03 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.81 Total: 4.60 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -0.14 Total: -8.63 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.51 Total: -39.67 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.77 Total: -19.01 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -3.96 Total: 21.68 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.85 -5.18 -37.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.015 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds