Wall clock time and date at job start Mon Mar 30 2020 04:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47048 * 2 1 4 4 C 1.50702 * 109.47196 * 119.99702 * 2 1 3 5 5 H 1.07993 * 119.99768 * 124.53272 * 4 2 1 6 6 C 1.37878 * 119.99631 * 304.53487 * 4 2 1 7 7 N 1.31522 * 119.99714 * 152.59477 * 6 4 2 8 8 Si 1.86800 * 120.00407 * 332.58906 * 6 4 2 9 9 H 1.48503 * 109.47181 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47306 * 300.00740 * 8 6 4 11 11 H 1.48505 * 109.46917 * 60.00283 * 8 6 4 12 12 N 1.46497 * 109.47192 * 240.00094 * 2 1 3 13 13 C 1.34770 * 120.00293 * 59.99677 * 12 2 1 14 14 O 1.21282 * 120.00316 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99946 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.86906 * 304.29982 * 15 13 12 17 17 C 1.54096 * 109.87838 * 65.30764 * 15 13 12 18 18 C 1.54809 * 104.18715 * 121.45018 * 17 15 13 19 19 C 1.54992 * 102.09276 * 20.88386 * 18 17 15 20 20 O 1.43748 * 109.87662 * 183.29294 * 15 13 12 21 21 H 1.09006 * 109.46875 * 291.12365 * 1 2 3 22 22 H 1.09005 * 109.46858 * 51.11824 * 1 2 3 23 23 H 1.08997 * 109.47408 * 171.12079 * 1 2 3 24 24 H 1.09001 * 109.46896 * 172.31831 * 3 2 1 25 25 H 1.09007 * 109.46934 * 292.31183 * 3 2 1 26 26 H 1.08993 * 109.47403 * 52.31184 * 3 2 1 27 27 H 0.96998 * 119.99931 * 354.83861 * 7 6 4 28 28 H 0.97006 * 119.99774 * 240.00047 * 12 2 1 29 29 H 1.09001 * 110.49168 * 240.12892 * 17 15 13 30 30 H 1.09000 * 110.49021 * 2.77716 * 17 15 13 31 31 H 1.09003 * 110.90733 * 139.07619 * 18 17 15 32 32 H 1.08992 * 110.91443 * 262.64861 * 18 17 15 33 33 H 1.08998 * 110.62204 * 81.47477 * 19 18 17 34 34 H 1.09005 * 110.62347 * 204.31740 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.7122 -1.5438 1.1331 6 6 1.6239 -0.2962 2.4806 7 7 1.5841 -1.1537 3.4770 8 14 1.1273 1.4829 2.7591 9 1 0.7323 1.6702 4.1784 10 1 2.2738 2.3722 2.4434 11 1 -0.0187 1.8208 1.8771 12 7 2.0183 -0.6906 -1.1962 13 6 1.6928 -0.2302 -2.4202 14 8 0.9958 0.7561 -2.5316 15 6 2.1947 -0.9410 -3.6507 16 1 3.2819 -1.0122 -3.6198 17 6 1.5792 -2.3515 -3.7287 18 6 0.8330 -2.3655 -5.0850 19 6 1.5340 -1.2161 -5.8530 20 8 1.7849 -0.2269 -4.8290 21 1 -0.3633 0.3704 0.9587 22 1 -0.3633 0.6451 -0.8000 23 1 -0.3634 -1.0153 -0.1586 24 1 3.1213 1.4456 0.1374 25 1 1.7932 1.9151 -0.9508 26 1 1.5688 1.9945 0.8132 27 1 1.7695 -2.0923 3.3168 28 1 2.5760 -1.4793 -1.1071 29 1 2.3615 -3.1105 -3.7158 30 1 0.8802 -2.5088 -2.9072 31 1 0.9737 -3.3176 -5.5967 32 1 -0.2271 -2.1526 -4.9481 33 1 2.4718 -1.5613 -6.2884 34 1 0.8783 -0.8148 -6.6258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259987955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:32 Heat of formation + Delta-G solvation = -97.632927 kcal Electronic energy + Delta-G solvation = -16623.390953 eV Core-core repulsion = 13941.754971 eV Total energy + Delta-G solvation = -2681.635983 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38650 -39.62898 -37.23759 -34.54726 -33.34871 -32.47452 -30.11946 -28.10644 -26.69628 -24.84914 -22.72941 -22.33555 -20.57421 -19.59312 -18.37257 -17.44110 -16.93693 -16.67393 -15.97315 -15.59107 -15.32353 -14.63625 -14.58224 -14.39588 -14.24672 -14.21378 -13.61958 -13.45539 -12.76455 -12.64844 -12.29773 -12.19035 -12.07662 -11.95193 -11.81285 -11.28540 -11.07947 -10.95161 -10.44646 -10.19466 -9.84861 -8.81814 -6.40084 1.43239 1.45833 1.68935 1.70518 2.16466 2.40491 2.92761 3.10795 3.52410 3.77002 3.86824 4.05907 4.28545 4.33413 4.40531 4.55029 4.63435 4.71715 4.78383 4.78939 4.89477 4.92701 4.99239 5.03460 5.13315 5.22171 5.54565 5.62417 5.77650 5.85934 6.03257 6.53942 6.89888 7.27002 7.44917 8.55121 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.051658 B = 0.007483 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.891774 B = 3740.958493 C = 3999.094079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.273 3.727 3 C -0.166 4.166 4 C -0.619 4.619 5 H 0.047 0.953 6 C 0.011 3.989 7 N -0.913 5.913 8 Si 1.070 2.930 9 H -0.299 1.299 10 H -0.268 1.268 11 H -0.257 1.257 12 N -0.697 5.697 13 C 0.498 3.502 14 O -0.573 6.573 15 C 0.062 3.938 16 H 0.113 0.887 17 C -0.144 4.144 18 C -0.148 4.148 19 C 0.037 3.963 20 O -0.386 6.386 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.404 0.596 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -3.721 -16.083 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.187 3.813 3 C -0.223 4.223 4 C -0.656 4.656 5 H 0.066 0.934 6 C -0.192 4.192 7 N -0.546 5.546 8 Si 0.897 3.103 9 H -0.227 1.227 10 H -0.194 1.194 11 H -0.184 1.184 12 N -0.347 5.347 13 C 0.285 3.715 14 O -0.453 6.453 15 C 0.001 3.999 16 H 0.131 0.869 17 C -0.182 4.182 18 C -0.185 4.185 19 C -0.039 4.039 20 O -0.304 6.304 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.239 0.761 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.410 -1.752 -15.007 15.114 hybrid contribution 0.792 -1.730 -0.626 2.003 sum 1.201 -3.482 -15.632 16.061 Atomic orbital electron populations 1.22384 0.97814 1.00133 1.00520 1.18142 0.90699 0.89516 0.82947 1.22566 1.00753 0.98444 1.00577 1.21974 1.32857 1.18858 0.91900 0.93442 1.26559 0.93214 1.07106 0.92365 1.70957 1.43387 1.04249 1.35998 0.83962 0.78339 0.73306 0.74692 1.22740 1.19400 1.18353 1.46137 1.52358 1.31437 1.04794 1.21160 0.80368 0.84614 0.85407 1.90586 1.39574 1.27922 1.87190 1.22745 1.00614 0.92120 0.84461 0.86925 1.22989 1.01512 0.94290 0.99427 1.23141 0.99870 1.00883 0.94634 1.23933 1.00841 0.88220 0.90899 1.89013 1.88774 1.31743 1.20914 0.93044 0.93541 0.94124 0.92976 0.92606 0.93656 0.92709 0.76128 0.86472 0.91522 0.86618 0.91632 0.89501 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.15 7.92 71.98 0.57 -6.58 16 2 C 0.27 12.90 0.78 2.86 0.00 12.90 16 3 C -0.17 -7.70 7.53 71.98 0.54 -7.15 16 4 C -0.62 -32.94 8.59 25.60 0.22 -32.72 16 5 H 0.05 2.63 7.85 -2.91 -0.02 2.61 16 6 C 0.01 0.62 5.07 84.65 0.43 1.05 16 7 N -0.91 -54.12 13.70 21.45 0.29 -53.83 16 8 Si 1.07 50.89 23.29 68.60 1.60 52.49 16 9 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 10 H -0.27 -11.94 6.77 99.48 0.67 -11.27 16 11 H -0.26 -11.54 5.66 99.48 0.56 -10.97 16 12 N -0.70 -27.66 5.07 -426.32 -2.16 -29.82 16 13 C 0.50 19.23 6.34 87.66 0.56 19.79 16 14 O -0.57 -26.87 12.82 15.67 0.20 -26.67 16 15 C 0.06 1.74 3.84 30.22 0.12 1.86 16 16 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 17 C -0.14 -3.05 6.62 31.58 0.21 -2.84 16 18 C -0.15 -2.59 7.16 31.89 0.23 -2.36 16 19 C 0.04 0.71 7.72 72.66 0.56 1.27 16 20 O -0.39 -11.88 10.75 -130.27 -1.40 -13.28 16 21 H 0.05 2.48 4.44 -2.38 -0.01 2.47 16 22 H 0.05 2.20 6.45 -2.38 -0.02 2.19 16 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.05 2.33 8.13 -2.39 -0.02 2.31 16 25 H 0.06 2.60 5.99 -2.38 -0.01 2.58 16 26 H 0.05 2.08 2.88 -2.39 -0.01 2.08 16 27 H 0.26 15.52 8.73 -92.71 -0.81 14.72 16 28 H 0.40 14.03 8.33 -92.70 -0.77 13.26 16 29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.68 7.69 -2.39 -0.02 1.66 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -68.43 264.20 2.08 -66.35 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.12 Total: 19.55 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.43 Total: -14.79 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.87 Total: -83.65 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.20 Total: -39.95 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.60 Total: 52.49 kcal Total: -68.43 2.08 -66.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.283 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds