Wall clock time and date at job start Mon Mar 30 2020 04:00:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.47048 * 2 1
4 4 C 1.50702 * 109.47196 * 119.99702 * 2 1 3
5 5 H 1.07993 * 119.99768 * 124.53272 * 4 2 1
6 6 C 1.37878 * 119.99631 * 304.53487 * 4 2 1
7 7 N 1.31522 * 119.99714 * 152.59477 * 6 4 2
8 8 Si 1.86800 * 120.00407 * 332.58906 * 6 4 2
9 9 H 1.48503 * 109.47181 * 180.02562 * 8 6 4
10 10 H 1.48495 * 109.47306 * 300.00740 * 8 6 4
11 11 H 1.48505 * 109.46917 * 60.00283 * 8 6 4
12 12 N 1.46497 * 109.47192 * 240.00094 * 2 1 3
13 13 C 1.34770 * 120.00293 * 59.99677 * 12 2 1
14 14 O 1.21282 * 120.00316 * 0.02562 * 13 12 2
15 15 C 1.50706 * 119.99946 * 180.02562 * 13 12 2
16 16 H 1.08995 * 109.86906 * 304.29982 * 15 13 12
17 17 C 1.54096 * 109.87838 * 65.30764 * 15 13 12
18 18 C 1.54809 * 104.18715 * 121.45018 * 17 15 13
19 19 C 1.54992 * 102.09276 * 20.88386 * 18 17 15
20 20 O 1.43748 * 109.87662 * 183.29294 * 15 13 12
21 21 H 1.09006 * 109.46875 * 291.12365 * 1 2 3
22 22 H 1.09005 * 109.46858 * 51.11824 * 1 2 3
23 23 H 1.08997 * 109.47408 * 171.12079 * 1 2 3
24 24 H 1.09001 * 109.46896 * 172.31831 * 3 2 1
25 25 H 1.09007 * 109.46934 * 292.31183 * 3 2 1
26 26 H 1.08993 * 109.47403 * 52.31184 * 3 2 1
27 27 H 0.96998 * 119.99931 * 354.83861 * 7 6 4
28 28 H 0.97006 * 119.99774 * 240.00047 * 12 2 1
29 29 H 1.09001 * 110.49168 * 240.12892 * 17 15 13
30 30 H 1.09000 * 110.49021 * 2.77716 * 17 15 13
31 31 H 1.09003 * 110.90733 * 139.07619 * 18 17 15
32 32 H 1.08992 * 110.91443 * 262.64861 * 18 17 15
33 33 H 1.08998 * 110.62204 * 81.47477 * 19 18 17
34 34 H 1.09005 * 110.62347 * 204.31740 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7103 1.2305
5 1 2.7122 -1.5438 1.1331
6 6 1.6239 -0.2962 2.4806
7 7 1.5841 -1.1537 3.4770
8 14 1.1273 1.4829 2.7591
9 1 0.7323 1.6702 4.1784
10 1 2.2738 2.3722 2.4434
11 1 -0.0187 1.8208 1.8771
12 7 2.0183 -0.6906 -1.1962
13 6 1.6928 -0.2302 -2.4202
14 8 0.9958 0.7561 -2.5316
15 6 2.1947 -0.9410 -3.6507
16 1 3.2819 -1.0122 -3.6198
17 6 1.5792 -2.3515 -3.7287
18 6 0.8330 -2.3655 -5.0850
19 6 1.5340 -1.2161 -5.8530
20 8 1.7849 -0.2269 -4.8290
21 1 -0.3633 0.3704 0.9587
22 1 -0.3633 0.6451 -0.8000
23 1 -0.3634 -1.0153 -0.1586
24 1 3.1213 1.4456 0.1374
25 1 1.7932 1.9151 -0.9508
26 1 1.5688 1.9945 0.8132
27 1 1.7695 -2.0923 3.3168
28 1 2.5760 -1.4793 -1.1071
29 1 2.3615 -3.1105 -3.7158
30 1 0.8802 -2.5088 -2.9072
31 1 0.9737 -3.3176 -5.5967
32 1 -0.2271 -2.1526 -4.9481
33 1 2.4718 -1.5613 -6.2884
34 1 0.8783 -0.8148 -6.6258
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259987955.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:00:32
Heat of formation + Delta-G solvation = -97.632927 kcal
Electronic energy + Delta-G solvation = -16623.390953 eV
Core-core repulsion = 13941.754971 eV
Total energy + Delta-G solvation = -2681.635983 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.38650 -39.62898 -37.23759 -34.54726 -33.34871 -32.47452 -30.11946 -28.10644
-26.69628 -24.84914 -22.72941 -22.33555 -20.57421 -19.59312 -18.37257 -17.44110
-16.93693 -16.67393 -15.97315 -15.59107 -15.32353 -14.63625 -14.58224 -14.39588
-14.24672 -14.21378 -13.61958 -13.45539 -12.76455 -12.64844 -12.29773 -12.19035
-12.07662 -11.95193 -11.81285 -11.28540 -11.07947 -10.95161 -10.44646 -10.19466
-9.84861 -8.81814 -6.40084 1.43239 1.45833 1.68935 1.70518 2.16466
2.40491 2.92761 3.10795 3.52410 3.77002 3.86824 4.05907 4.28545
4.33413 4.40531 4.55029 4.63435 4.71715 4.78383 4.78939 4.89477
4.92701 4.99239 5.03460 5.13315 5.22171 5.54565 5.62417 5.77650
5.85934 6.03257 6.53942 6.89888 7.27002 7.44917 8.55121
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.051658 B = 0.007483 C = 0.007000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 541.891774 B = 3740.958493 C = 3999.094079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.273 3.727
3 C -0.166 4.166
4 C -0.619 4.619
5 H 0.047 0.953
6 C 0.011 3.989
7 N -0.913 5.913
8 Si 1.070 2.930
9 H -0.299 1.299
10 H -0.268 1.268
11 H -0.257 1.257
12 N -0.697 5.697
13 C 0.498 3.502
14 O -0.573 6.573
15 C 0.062 3.938
16 H 0.113 0.887
17 C -0.144 4.144
18 C -0.148 4.148
19 C 0.037 3.963
20 O -0.386 6.386
21 H 0.051 0.949
22 H 0.046 0.954
23 H 0.040 0.960
24 H 0.051 0.949
25 H 0.055 0.945
26 H 0.045 0.955
27 H 0.264 0.736
28 H 0.404 0.596
29 H 0.117 0.883
30 H 0.066 0.934
31 H 0.115 0.885
32 H 0.065 0.935
33 H 0.087 0.913
34 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.383 -3.721 -16.083 16.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.187 3.813
3 C -0.223 4.223
4 C -0.656 4.656
5 H 0.066 0.934
6 C -0.192 4.192
7 N -0.546 5.546
8 Si 0.897 3.103
9 H -0.227 1.227
10 H -0.194 1.194
11 H -0.184 1.184
12 N -0.347 5.347
13 C 0.285 3.715
14 O -0.453 6.453
15 C 0.001 3.999
16 H 0.131 0.869
17 C -0.182 4.182
18 C -0.185 4.185
19 C -0.039 4.039
20 O -0.304 6.304
21 H 0.070 0.930
22 H 0.065 0.935
23 H 0.059 0.941
24 H 0.070 0.930
25 H 0.074 0.926
26 H 0.063 0.937
27 H 0.073 0.927
28 H 0.239 0.761
29 H 0.135 0.865
30 H 0.085 0.915
31 H 0.134 0.866
32 H 0.084 0.916
33 H 0.105 0.895
34 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 0.410 -1.752 -15.007 15.114
hybrid contribution 0.792 -1.730 -0.626 2.003
sum 1.201 -3.482 -15.632 16.061
Atomic orbital electron populations
1.22384 0.97814 1.00133 1.00520 1.18142 0.90699 0.89516 0.82947
1.22566 1.00753 0.98444 1.00577 1.21974 1.32857 1.18858 0.91900
0.93442 1.26559 0.93214 1.07106 0.92365 1.70957 1.43387 1.04249
1.35998 0.83962 0.78339 0.73306 0.74692 1.22740 1.19400 1.18353
1.46137 1.52358 1.31437 1.04794 1.21160 0.80368 0.84614 0.85407
1.90586 1.39574 1.27922 1.87190 1.22745 1.00614 0.92120 0.84461
0.86925 1.22989 1.01512 0.94290 0.99427 1.23141 0.99870 1.00883
0.94634 1.23933 1.00841 0.88220 0.90899 1.89013 1.88774 1.31743
1.20914 0.93044 0.93541 0.94124 0.92976 0.92606 0.93656 0.92709
0.76128 0.86472 0.91522 0.86618 0.91632 0.89501 0.87825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -7.15 7.92 71.98 0.57 -6.58 16
2 C 0.27 12.90 0.78 2.86 0.00 12.90 16
3 C -0.17 -7.70 7.53 71.98 0.54 -7.15 16
4 C -0.62 -32.94 8.59 25.60 0.22 -32.72 16
5 H 0.05 2.63 7.85 -2.91 -0.02 2.61 16
6 C 0.01 0.62 5.07 84.65 0.43 1.05 16
7 N -0.91 -54.12 13.70 21.45 0.29 -53.83 16
8 Si 1.07 50.89 23.29 68.60 1.60 52.49 16
9 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16
10 H -0.27 -11.94 6.77 99.48 0.67 -11.27 16
11 H -0.26 -11.54 5.66 99.48 0.56 -10.97 16
12 N -0.70 -27.66 5.07 -426.32 -2.16 -29.82 16
13 C 0.50 19.23 6.34 87.66 0.56 19.79 16
14 O -0.57 -26.87 12.82 15.67 0.20 -26.67 16
15 C 0.06 1.74 3.84 30.22 0.12 1.86 16
16 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16
17 C -0.14 -3.05 6.62 31.58 0.21 -2.84 16
18 C -0.15 -2.59 7.16 31.89 0.23 -2.36 16
19 C 0.04 0.71 7.72 72.66 0.56 1.27 16
20 O -0.39 -11.88 10.75 -130.27 -1.40 -13.28 16
21 H 0.05 2.48 4.44 -2.38 -0.01 2.47 16
22 H 0.05 2.20 6.45 -2.38 -0.02 2.19 16
23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
24 H 0.05 2.33 8.13 -2.39 -0.02 2.31 16
25 H 0.06 2.60 5.99 -2.38 -0.01 2.58 16
26 H 0.05 2.08 2.88 -2.39 -0.01 2.08 16
27 H 0.26 15.52 8.73 -92.71 -0.81 14.72 16
28 H 0.40 14.03 8.33 -92.70 -0.77 13.26 16
29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16
30 H 0.07 1.68 7.69 -2.39 -0.02 1.66 16
31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16
32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
34 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16
Total: -1.00 -68.43 264.20 2.08 -66.35
By element:
Atomic # 1 Polarization: 19.43 SS G_CDS: 0.12 Total: 19.55 kcal
Atomic # 6 Polarization: -18.22 SS G_CDS: 3.43 Total: -14.79 kcal
Atomic # 7 Polarization: -81.78 SS G_CDS: -1.87 Total: -83.65 kcal
Atomic # 8 Polarization: -38.75 SS G_CDS: -1.20 Total: -39.95 kcal
Atomic # 14 Polarization: 50.89 SS G_CDS: 1.60 Total: 52.49 kcal
Total: -68.43 2.08 -66.35 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259987955.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.283 kcal
(2) G-P(sol) polarization free energy of solvation -68.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds