Wall clock time and date at job start Mon Mar 30 2020 03:19:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99784 * 2 1
4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1
5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1
6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1
7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1
9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1
10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2
11 11 H 1.08993 * 110.65119 * 308.15826 * 10 9 7
12 12 C 1.54453 * 110.72732 * 184.99890 * 10 9 7
13 13 O 1.43895 * 105.08343 * 219.85282 * 12 10 9
14 14 C 1.43783 * 107.10375 * 358.28673 * 13 12 10
15 15 H 1.08995 * 110.11395 * 265.90866 * 14 13 12
16 16 C 1.53000 * 110.10822 * 144.32571 * 14 13 12
17 17 H 1.08990 * 110.63365 * 300.75087 * 16 14 13
18 18 C 1.55142 * 110.70629 * 63.86433 * 16 14 13
19 19 C 1.55114 * 101.56010 * 153.90255 * 18 16 14
20 20 N 1.47846 * 104.90389 * 323.15657 * 19 18 16
21 21 C 1.47439 * 108.57043 * 23.97036 * 20 19 18
22 22 O 1.44387 * 106.16961 * 25.08979 * 14 13 12
23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3
24 24 H 1.09004 * 109.47017 * 299.99842 * 9 7 2
25 25 H 1.08997 * 109.47037 * 59.99777 * 9 7 2
26 26 H 1.09005 * 110.31660 * 338.75300 * 12 10 9
27 27 H 1.08997 * 110.32138 * 100.84459 * 12 10 9
28 28 H 1.09000 * 110.98692 * 272.12428 * 18 16 14
29 29 H 1.09002 * 110.99301 * 35.93834 * 18 16 14
30 30 H 1.09002 * 110.42000 * 204.23935 * 19 18 16
31 31 H 1.08994 * 110.31117 * 82.01824 * 19 18 16
32 32 H 1.00895 * 111.00204 * 146.24724 * 20 19 18
33 33 H 1.08994 * 109.89596 * 239.60519 * 21 20 19
34 34 H 1.09002 * 110.02159 * 118.48868 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0465 -1.4001
5 1 3.5467 1.4403 0.7001
6 1 1.4466 2.6527 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 1.4646 -2.1293 0.0014
9 6 3.5116 -1.1940 0.0011
10 6 4.0216 -2.6365 0.0010
11 1 3.5553 -3.2091 0.8026
12 6 5.5605 -2.6722 0.1275
13 8 5.9851 -3.7207 -0.7619
14 6 4.7984 -4.2929 -1.3380
15 1 4.4811 -5.1599 -0.7587
16 6 5.0613 -4.6982 -2.7897
17 1 5.3650 -3.8343 -3.3807
18 6 6.1341 -5.8166 -2.8613
19 6 5.7629 -6.5186 -4.1938
20 7 4.2857 -6.4844 -4.2429
21 6 3.8137 -5.3679 -3.4036
22 8 3.7882 -3.2627 -1.2840
23 1 -0.4850 0.8400 -0.0004
24 1 3.8753 -0.6803 -0.8889
25 1 3.8746 -0.6799 0.8911
26 1 5.9879 -1.7181 -0.1810
27 1 5.8508 -2.9025 1.1525
28 1 7.1374 -5.3929 -2.9063
29 1 6.0393 -6.5032 -2.0200
30 1 6.1189 -7.5489 -4.1928
31 1 6.1835 -5.9734 -5.0386
32 1 3.9576 -6.3871 -5.1921
33 1 3.1684 -5.7467 -2.6111
34 1 3.2683 -4.6474 -4.0131
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260519277.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:07
Heat of formation + Delta-G solvation = -94.806842 kcal
Electronic energy + Delta-G solvation = -16168.747529 eV
Core-core repulsion = 13487.234094 eV
Total energy + Delta-G solvation = -2681.513434 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.08817 -38.09673 -34.65965 -33.25902 -31.74357 -30.23950 -29.01215 -27.04908
-23.88327 -22.94214 -21.34869 -20.76917 -19.94020 -17.33709 -16.79685 -16.26561
-16.02866 -15.35621 -15.18484 -14.29994 -13.99341 -13.33861 -13.09595 -12.85135
-12.54641 -12.31308 -12.24033 -11.87044 -11.75817 -11.44080 -11.29203 -11.07859
-10.77972 -10.58096 -10.18468 -9.72818 -9.58631 -9.40268 -9.18457 -8.58267
-8.50378 -6.07023 -4.05520 3.27862 3.35152 3.35867 3.83221 4.12170
4.28280 4.40857 4.69680 4.86774 4.97654 5.13706 5.22398 5.26542
5.39178 5.40797 5.50110 5.52558 5.64750 5.81643 5.87547 5.91476
6.08402 6.12874 6.18361 6.31484 6.56461 6.78628 6.94036 7.08354
7.27741 7.50926 7.69597 8.48274 8.98117 9.53114 11.06360
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.039240 B = 0.006491 C = 0.005931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 713.382108 B = 4312.536754 C = 4719.496039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.068 3.932
3 Si 0.878 3.122
4 H -0.276 1.276
5 H -0.266 1.266
6 H -0.286 1.286
7 C -0.516 4.516
8 H 0.075 0.925
9 C -0.008 4.008
10 C 0.065 3.935
11 H 0.078 0.922
12 C 0.019 3.981
13 O -0.393 6.393
14 C 0.234 3.766
15 H 0.069 0.931
16 C -0.107 4.107
17 H 0.087 0.913
18 C -0.116 4.116
19 C 0.044 3.956
20 N -0.686 5.686
21 C 0.057 3.943
22 O -0.353 6.353
23 H 0.264 0.736
24 H 0.024 0.976
25 H 0.034 0.966
26 H 0.080 0.920
27 H 0.077 0.923
28 H 0.078 0.922
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.042 0.958
32 H 0.339 0.661
33 H 0.081 0.919
34 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.321 -9.343 -4.919 16.227
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.134 4.134
3 Si 0.706 3.294
4 H -0.202 1.202
5 H -0.191 1.191
6 H -0.212 1.212
7 C -0.554 4.554
8 H 0.093 0.907
9 C -0.045 4.045
10 C 0.008 3.992
11 H 0.096 0.904
12 C -0.057 4.057
13 O -0.315 6.315
14 C 0.138 3.862
15 H 0.087 0.913
16 C -0.127 4.127
17 H 0.105 0.895
18 C -0.154 4.154
19 C -0.085 4.085
20 N -0.315 5.315
21 C -0.072 4.072
22 O -0.273 6.273
23 H 0.073 0.927
24 H 0.043 0.957
25 H 0.052 0.948
26 H 0.098 0.902
27 H 0.095 0.905
28 H 0.096 0.904
29 H 0.095 0.905
30 H 0.096 0.904
31 H 0.060 0.940
32 H 0.154 0.846
33 H 0.099 0.901
34 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 12.088 -9.742 -4.639 16.204
hybrid contribution 0.479 1.760 -0.363 1.860
sum 12.568 -7.982 -5.002 15.706
Atomic orbital electron populations
1.69906 1.06242 1.26897 1.50863 1.24998 0.94763 0.99020 0.94585
0.86808 0.80249 0.83788 0.78591 1.20218 1.19103 1.21240 1.20983
0.88697 0.94775 1.50904 0.90676 1.19668 0.98414 0.88991 0.97434
1.23880 0.91612 0.98346 0.85394 0.90443 1.24164 0.96229 0.91382
0.93944 1.88785 1.30619 1.50997 1.61056 1.24196 0.77604 0.91148
0.93205 0.91341 1.22499 0.96459 0.98820 0.94889 0.89472 1.22667
0.98533 0.96489 0.97693 1.22878 0.88231 1.00511 0.96847 1.61899
1.09025 1.45332 1.15265 1.22514 0.96064 0.91126 0.97533 1.89602
1.51975 1.48203 1.37510 0.92658 0.95740 0.94758 0.90217 0.90479
0.90358 0.90522 0.90354 0.93981 0.84602 0.90090 0.92044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16
2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16
3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16
6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
7 C -0.52 -14.72 9.60 -34.44 -0.33 -15.05 16
8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16
9 C -0.01 -0.19 3.68 -27.88 -0.10 -0.29 16
10 C 0.06 1.31 3.31 -25.97 -0.09 1.23 16
11 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16
12 C 0.02 0.33 7.66 37.92 0.29 0.62 16
13 O -0.39 -6.71 11.07 -59.28 -0.66 -7.37 16
14 C 0.23 3.95 3.17 37.16 0.12 4.06 16
15 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16
16 C -0.11 -1.54 2.98 -88.79 -0.26 -1.81 16
17 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
18 C -0.12 -1.37 6.37 -24.48 -0.16 -1.53 16
19 C 0.04 0.46 7.58 -2.19 -0.02 0.45 16
20 N -0.69 -8.15 7.39 -110.67 -0.82 -8.97 16
21 C 0.06 0.79 7.04 -2.83 -0.02 0.77 16
22 O -0.35 -7.39 11.01 -59.28 -0.65 -8.04 16
23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
24 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16
25 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16
26 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16
27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
29 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16
30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.34 3.42 8.91 -39.29 -0.35 3.07 16
33 H 0.08 1.22 7.81 -51.93 -0.41 0.81 16
34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
LS Contribution 277.31 15.07 4.18 4.18
Total: -1.00 -31.27 277.31 -7.82 -39.10
By element:
Atomic # 1 Polarization: 6.30 SS G_CDS: -5.31 Total: 0.99 kcal
Atomic # 6 Polarization: -9.01 SS G_CDS: -0.67 Total: -9.68 kcal
Atomic # 7 Polarization: -35.93 SS G_CDS: -0.04 Total: -35.97 kcal
Atomic # 8 Polarization: -14.10 SS G_CDS: -1.31 Total: -15.41 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal
Total LS contribution 4.18 Total: 4.18 kcal
Total: -31.27 -7.82 -39.10 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260519277.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.707 kcal
(2) G-P(sol) polarization free energy of solvation -31.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds