Wall clock time and date at job start Mon Mar 30 2020 03:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.65119 * 308.15826 * 10 9 7 12 12 C 1.54453 * 110.72732 * 184.99890 * 10 9 7 13 13 O 1.43895 * 105.08343 * 219.85282 * 12 10 9 14 14 C 1.43783 * 107.10375 * 358.28673 * 13 12 10 15 15 H 1.08995 * 110.11395 * 265.90866 * 14 13 12 16 16 C 1.53000 * 110.10822 * 144.32571 * 14 13 12 17 17 H 1.08990 * 110.63365 * 300.75087 * 16 14 13 18 18 C 1.55142 * 110.70629 * 63.86433 * 16 14 13 19 19 C 1.55114 * 101.56010 * 153.90255 * 18 16 14 20 20 N 1.47846 * 104.90389 * 323.15657 * 19 18 16 21 21 C 1.47439 * 108.57043 * 23.97036 * 20 19 18 22 22 O 1.44387 * 106.16961 * 25.08979 * 14 13 12 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 25 25 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 26 26 H 1.09005 * 110.31660 * 338.75300 * 12 10 9 27 27 H 1.08997 * 110.32138 * 100.84459 * 12 10 9 28 28 H 1.09000 * 110.98692 * 272.12428 * 18 16 14 29 29 H 1.09002 * 110.99301 * 35.93834 * 18 16 14 30 30 H 1.09002 * 110.42000 * 204.23935 * 19 18 16 31 31 H 1.08994 * 110.31117 * 82.01824 * 19 18 16 32 32 H 1.00895 * 111.00204 * 146.24724 * 20 19 18 33 33 H 1.08994 * 109.89596 * 239.60519 * 21 20 19 34 34 H 1.09002 * 110.02159 * 118.48868 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5553 -3.2091 0.8026 12 6 5.5605 -2.6722 0.1275 13 8 5.9851 -3.7207 -0.7619 14 6 4.7984 -4.2929 -1.3380 15 1 4.4811 -5.1599 -0.7587 16 6 5.0613 -4.6982 -2.7897 17 1 5.3650 -3.8343 -3.3807 18 6 6.1341 -5.8166 -2.8613 19 6 5.7629 -6.5186 -4.1938 20 7 4.2857 -6.4844 -4.2429 21 6 3.8137 -5.3679 -3.4036 22 8 3.7882 -3.2627 -1.2840 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.6803 -0.8889 25 1 3.8746 -0.6799 0.8911 26 1 5.9879 -1.7181 -0.1810 27 1 5.8508 -2.9025 1.1525 28 1 7.1374 -5.3929 -2.9063 29 1 6.0393 -6.5032 -2.0200 30 1 6.1189 -7.5489 -4.1928 31 1 6.1835 -5.9734 -5.0386 32 1 3.9576 -6.3871 -5.1921 33 1 3.1684 -5.7467 -2.6111 34 1 3.2683 -4.6474 -4.0131 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260519277.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:07 Heat of formation + Delta-G solvation = -118.453952 kcal Electronic energy + Delta-G solvation = -16169.772944 eV Core-core repulsion = 13487.234094 eV Total energy + Delta-G solvation = -2682.538850 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.47293 -39.16591 -36.18860 -35.19127 -33.40049 -31.63391 -30.05465 -28.71148 -25.28223 -24.61573 -22.54465 -22.10592 -21.24739 -19.15240 -18.21212 -17.59684 -17.45601 -16.83424 -16.42903 -16.19663 -15.23443 -14.77714 -14.43883 -14.26637 -14.02066 -13.88001 -13.53716 -13.34201 -13.20164 -13.02294 -12.43553 -12.36327 -12.19396 -11.87714 -11.80883 -11.67365 -11.42770 -11.07135 -10.79777 -10.66290 -9.45404 -8.30128 -6.35166 1.36044 1.37752 1.48788 2.34714 2.50013 2.85888 3.06580 3.27094 3.59742 3.71795 3.75702 3.83204 3.96708 4.16935 4.25208 4.34013 4.42849 4.50130 4.56158 4.69515 4.74898 4.89342 4.99969 5.04271 5.06410 5.11081 5.25152 5.30922 5.57418 5.80921 6.05039 6.23669 6.41603 6.70619 7.27588 8.87035 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039240 B = 0.006491 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.382108 B = 4312.536754 C = 4719.496039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.236 1.236 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.027 0.973 9 C -0.004 4.004 10 C 0.059 3.941 11 H 0.073 0.927 12 C 0.028 3.972 13 O -0.393 6.393 14 C 0.232 3.768 15 H 0.075 0.925 16 C -0.107 4.107 17 H 0.079 0.921 18 C -0.109 4.109 19 C 0.047 3.953 20 N -0.690 5.690 21 C 0.060 3.940 22 O -0.386 6.386 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.349 0.651 33 H 0.063 0.937 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.074 -9.050 -5.092 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.159 1.159 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.045 0.955 9 C -0.042 4.042 10 C 0.002 3.998 11 H 0.091 0.909 12 C -0.048 4.048 13 O -0.315 6.315 14 C 0.137 3.863 15 H 0.092 0.908 16 C -0.127 4.127 17 H 0.098 0.902 18 C -0.147 4.147 19 C -0.082 4.082 20 N -0.320 5.320 21 C -0.069 4.069 22 O -0.307 6.307 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.082 0.918 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.867 -9.477 -4.815 18.276 hybrid contribution -0.454 1.558 -0.329 1.656 sum 14.413 -7.918 -5.144 17.230 Atomic orbital electron populations 1.70076 1.08440 1.28231 1.52477 1.26044 0.95677 1.03620 0.94014 0.85630 0.79836 0.77913 0.79093 1.19696 1.15936 1.20792 1.21274 0.91565 0.93086 1.50580 0.95486 1.19593 0.94838 0.91686 0.98052 1.23804 0.94396 0.96310 0.85293 0.90919 1.24171 0.93018 0.91981 0.95647 1.88771 1.30352 1.51110 1.61230 1.24411 0.76746 0.90231 0.94889 0.90754 1.22513 0.97623 0.99453 0.93139 0.90245 1.22672 0.98065 0.95467 0.98524 1.22956 0.87105 1.01581 0.96533 1.61882 1.10237 1.44065 1.15818 1.22376 0.95793 0.91474 0.97305 1.89574 1.53760 1.49586 1.37766 0.92445 0.95752 0.92759 0.89239 0.87352 0.89277 0.90546 0.88680 0.92541 0.83406 0.91827 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 2 C 0.00 0.18 5.47 84.65 0.46 0.64 16 3 Si 0.95 43.71 27.47 68.60 1.88 45.60 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.53 -30.86 9.60 25.60 0.25 -30.61 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 9 C 0.00 -0.21 3.68 29.85 0.11 -0.10 16 10 C 0.06 2.36 3.31 31.09 0.10 2.47 16 11 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 12 C 0.03 0.87 7.66 72.48 0.56 1.42 16 13 O -0.39 -12.56 11.07 -125.98 -1.39 -13.95 16 14 C 0.23 7.67 3.17 71.98 0.23 7.90 16 15 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 16 C -0.11 -3.01 2.98 -9.61 -0.03 -3.04 16 17 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 18 C -0.11 -2.35 6.37 32.05 0.20 -2.14 16 19 C 0.05 0.86 7.58 86.85 0.66 1.52 16 20 N -0.69 -15.42 7.39 -504.05 -3.73 -19.14 16 21 C 0.06 1.67 7.04 86.65 0.61 2.28 16 22 O -0.39 -16.35 11.01 -125.98 -1.39 -17.74 16 23 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 24 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 25 H 0.05 2.30 7.20 -2.39 -0.02 2.28 16 26 H 0.09 2.61 7.85 -2.38 -0.02 2.59 16 27 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.35 6.54 8.91 -89.70 -0.80 5.74 16 33 H 0.06 1.97 7.81 -2.39 -0.02 1.95 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.80 277.31 -0.95 -69.75 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.22 Total: 15.32 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.15 Total: -19.67 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -3.43 Total: -79.31 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -2.78 Total: -31.69 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -68.80 -0.95 -69.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260519277.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.700 kcal (2) G-P(sol) polarization free energy of solvation -68.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds