Wall clock time and date at job start Mon Mar 30 2020 03:19:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99784 * 2 1
4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1
5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1
6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1
7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1
9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1
10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2
11 11 H 1.08993 * 110.65119 * 308.15826 * 10 9 7
12 12 C 1.54453 * 110.72732 * 184.99890 * 10 9 7
13 13 O 1.43895 * 105.08343 * 219.85282 * 12 10 9
14 14 C 1.43783 * 107.10375 * 358.28673 * 13 12 10
15 15 H 1.08995 * 110.11395 * 265.90866 * 14 13 12
16 16 C 1.53000 * 110.10822 * 144.32571 * 14 13 12
17 17 H 1.08990 * 110.63365 * 300.75087 * 16 14 13
18 18 C 1.55142 * 110.70629 * 63.86433 * 16 14 13
19 19 C 1.55114 * 101.56010 * 153.90255 * 18 16 14
20 20 N 1.47846 * 104.90389 * 323.15657 * 19 18 16
21 21 C 1.47439 * 108.57043 * 23.97036 * 20 19 18
22 22 O 1.44387 * 106.16961 * 25.08979 * 14 13 12
23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3
24 24 H 1.09004 * 109.47017 * 299.99842 * 9 7 2
25 25 H 1.08997 * 109.47037 * 59.99777 * 9 7 2
26 26 H 1.09005 * 110.31660 * 338.75300 * 12 10 9
27 27 H 1.08997 * 110.32138 * 100.84459 * 12 10 9
28 28 H 1.09000 * 110.98692 * 272.12428 * 18 16 14
29 29 H 1.09002 * 110.99301 * 35.93834 * 18 16 14
30 30 H 1.09002 * 110.42000 * 204.23935 * 19 18 16
31 31 H 1.08994 * 110.31117 * 82.01824 * 19 18 16
32 32 H 1.00895 * 111.00204 * 146.24724 * 20 19 18
33 33 H 1.08994 * 109.89596 * 239.60519 * 21 20 19
34 34 H 1.09002 * 110.02159 * 118.48868 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0465 -1.4001
5 1 3.5467 1.4403 0.7001
6 1 1.4466 2.6527 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 1.4646 -2.1293 0.0014
9 6 3.5116 -1.1940 0.0011
10 6 4.0216 -2.6365 0.0010
11 1 3.5553 -3.2091 0.8026
12 6 5.5605 -2.6722 0.1275
13 8 5.9851 -3.7207 -0.7619
14 6 4.7984 -4.2929 -1.3380
15 1 4.4811 -5.1599 -0.7587
16 6 5.0613 -4.6982 -2.7897
17 1 5.3650 -3.8343 -3.3807
18 6 6.1341 -5.8166 -2.8613
19 6 5.7629 -6.5186 -4.1938
20 7 4.2857 -6.4844 -4.2429
21 6 3.8137 -5.3679 -3.4036
22 8 3.7882 -3.2627 -1.2840
23 1 -0.4850 0.8400 -0.0004
24 1 3.8753 -0.6803 -0.8889
25 1 3.8746 -0.6799 0.8911
26 1 5.9879 -1.7181 -0.1810
27 1 5.8508 -2.9025 1.1525
28 1 7.1374 -5.3929 -2.9063
29 1 6.0393 -6.5032 -2.0200
30 1 6.1189 -7.5489 -4.1928
31 1 6.1835 -5.9734 -5.0386
32 1 3.9576 -6.3871 -5.1921
33 1 3.1684 -5.7467 -2.6111
34 1 3.2683 -4.6474 -4.0131
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260519277.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:07
Heat of formation + Delta-G solvation = -118.453952 kcal
Electronic energy + Delta-G solvation = -16169.772944 eV
Core-core repulsion = 13487.234094 eV
Total energy + Delta-G solvation = -2682.538850 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.47293 -39.16591 -36.18860 -35.19127 -33.40049 -31.63391 -30.05465 -28.71148
-25.28223 -24.61573 -22.54465 -22.10592 -21.24739 -19.15240 -18.21212 -17.59684
-17.45601 -16.83424 -16.42903 -16.19663 -15.23443 -14.77714 -14.43883 -14.26637
-14.02066 -13.88001 -13.53716 -13.34201 -13.20164 -13.02294 -12.43553 -12.36327
-12.19396 -11.87714 -11.80883 -11.67365 -11.42770 -11.07135 -10.79777 -10.66290
-9.45404 -8.30128 -6.35166 1.36044 1.37752 1.48788 2.34714 2.50013
2.85888 3.06580 3.27094 3.59742 3.71795 3.75702 3.83204 3.96708
4.16935 4.25208 4.34013 4.42849 4.50130 4.56158 4.69515 4.74898
4.89342 4.99969 5.04271 5.06410 5.11081 5.25152 5.30922 5.57418
5.80921 6.05039 6.23669 6.41603 6.70619 7.27588 8.87035
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.039240 B = 0.006491 C = 0.005931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 713.382108 B = 4312.536754 C = 4719.496039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.952 5.952
2 C 0.003 3.997
3 Si 0.953 3.047
4 H -0.272 1.272
5 H -0.236 1.236
6 H -0.282 1.282
7 C -0.527 4.527
8 H 0.027 0.973
9 C -0.004 4.004
10 C 0.059 3.941
11 H 0.073 0.927
12 C 0.028 3.972
13 O -0.393 6.393
14 C 0.232 3.768
15 H 0.075 0.925
16 C -0.107 4.107
17 H 0.079 0.921
18 C -0.109 4.109
19 C 0.047 3.953
20 N -0.690 5.690
21 C 0.060 3.940
22 O -0.386 6.386
23 H 0.267 0.733
24 H 0.024 0.976
25 H 0.054 0.946
26 H 0.089 0.911
27 H 0.109 0.891
28 H 0.089 0.911
29 H 0.076 0.924
30 H 0.095 0.905
31 H 0.056 0.944
32 H 0.349 0.651
33 H 0.063 0.937
34 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.074 -9.050 -5.092 18.305
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.194 4.194
3 Si 0.775 3.225
4 H -0.197 1.197
5 H -0.159 1.159
6 H -0.208 1.208
7 C -0.565 4.565
8 H 0.045 0.955
9 C -0.042 4.042
10 C 0.002 3.998
11 H 0.091 0.909
12 C -0.048 4.048
13 O -0.315 6.315
14 C 0.137 3.863
15 H 0.092 0.908
16 C -0.127 4.127
17 H 0.098 0.902
18 C -0.147 4.147
19 C -0.082 4.082
20 N -0.320 5.320
21 C -0.069 4.069
22 O -0.307 6.307
23 H 0.076 0.924
24 H 0.042 0.958
25 H 0.072 0.928
26 H 0.108 0.892
27 H 0.126 0.874
28 H 0.107 0.893
29 H 0.095 0.905
30 H 0.113 0.887
31 H 0.075 0.925
32 H 0.166 0.834
33 H 0.082 0.918
34 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 14.867 -9.477 -4.815 18.276
hybrid contribution -0.454 1.558 -0.329 1.656
sum 14.413 -7.918 -5.144 17.230
Atomic orbital electron populations
1.70076 1.08440 1.28231 1.52477 1.26044 0.95677 1.03620 0.94014
0.85630 0.79836 0.77913 0.79093 1.19696 1.15936 1.20792 1.21274
0.91565 0.93086 1.50580 0.95486 1.19593 0.94838 0.91686 0.98052
1.23804 0.94396 0.96310 0.85293 0.90919 1.24171 0.93018 0.91981
0.95647 1.88771 1.30352 1.51110 1.61230 1.24411 0.76746 0.90231
0.94889 0.90754 1.22513 0.97623 0.99453 0.93139 0.90245 1.22672
0.98065 0.95467 0.98524 1.22956 0.87105 1.01581 0.96533 1.61882
1.10237 1.44065 1.15818 1.22376 0.95793 0.91474 0.97305 1.89574
1.53760 1.49586 1.37766 0.92445 0.95752 0.92759 0.89239 0.87352
0.89277 0.90546 0.88680 0.92541 0.83406 0.91827 0.92993
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16
2 C 0.00 0.18 5.47 84.65 0.46 0.64 16
3 Si 0.95 43.71 27.47 68.60 1.88 45.60 16
4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
5 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16
6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
7 C -0.53 -30.86 9.60 25.60 0.25 -30.61 16
8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16
9 C 0.00 -0.21 3.68 29.85 0.11 -0.10 16
10 C 0.06 2.36 3.31 31.09 0.10 2.47 16
11 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16
12 C 0.03 0.87 7.66 72.48 0.56 1.42 16
13 O -0.39 -12.56 11.07 -125.98 -1.39 -13.95 16
14 C 0.23 7.67 3.17 71.98 0.23 7.90 16
15 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16
16 C -0.11 -3.01 2.98 -9.61 -0.03 -3.04 16
17 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16
18 C -0.11 -2.35 6.37 32.05 0.20 -2.14 16
19 C 0.05 0.86 7.58 86.85 0.66 1.52 16
20 N -0.69 -15.42 7.39 -504.05 -3.73 -19.14 16
21 C 0.06 1.67 7.04 86.65 0.61 2.28 16
22 O -0.39 -16.35 11.01 -125.98 -1.39 -17.74 16
23 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16
24 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16
25 H 0.05 2.30 7.20 -2.39 -0.02 2.28 16
26 H 0.09 2.61 7.85 -2.38 -0.02 2.59 16
27 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16
28 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16
29 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16
30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.35 6.54 8.91 -89.70 -0.80 5.74 16
33 H 0.06 1.97 7.81 -2.39 -0.02 1.95 16
34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
Total: -1.00 -68.80 277.31 -0.95 -69.75
By element:
Atomic # 1 Polarization: 15.09 SS G_CDS: 0.22 Total: 15.32 kcal
Atomic # 6 Polarization: -22.82 SS G_CDS: 3.15 Total: -19.67 kcal
Atomic # 7 Polarization: -75.88 SS G_CDS: -3.43 Total: -79.31 kcal
Atomic # 8 Polarization: -28.91 SS G_CDS: -2.78 Total: -31.69 kcal
Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal
Total: -68.80 -0.95 -69.75 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260519277.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.700 kcal
(2) G-P(sol) polarization free energy of solvation -68.801 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds