Wall clock time and date at job start Mon Mar 30 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48497 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46816 * 299.99424 * 3 2 1 6 6 H 1.48499 * 109.47165 * 59.99646 * 3 2 1 7 7 C 1.37881 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46766 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.75727 * 303.27998 * 10 9 7 12 12 C 1.54914 * 110.69255 * 180.10737 * 10 9 7 13 13 O 1.44584 * 101.63458 * 205.96080 * 12 10 9 14 14 C 1.43753 * 104.92274 * 36.27146 * 13 12 10 15 15 H 1.09001 * 109.63347 * 95.31225 * 14 13 12 16 16 C 1.52992 * 109.63374 * 215.70925 * 14 13 12 17 17 H 1.09005 * 110.76609 * 180.64994 * 16 14 13 18 18 C 1.55398 * 110.84620 * 303.91428 * 16 14 13 19 19 C 1.54916 * 101.74107 * 153.86232 * 18 16 14 20 20 N 1.47843 * 104.79337 * 323.02060 * 19 18 16 21 21 C 1.47439 * 108.57210 * 24.09642 * 20 19 18 22 22 O 1.43374 * 108.66730 * 335.51534 * 14 13 12 23 23 H 0.97001 * 119.99586 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47555 * 59.99803 * 9 7 2 25 25 H 1.08996 * 109.46921 * 299.99554 * 9 7 2 26 26 H 1.08997 * 110.97981 * 324.14655 * 12 10 9 27 27 H 1.08996 * 110.97816 * 87.89962 * 12 10 9 28 28 H 1.08995 * 110.87020 * 35.77889 * 18 16 14 29 29 H 1.08997 * 111.05714 * 272.03120 * 18 16 14 30 30 H 1.08996 * 110.37177 * 204.18825 * 19 18 16 31 31 H 1.09001 * 110.46818 * 81.89579 * 19 18 16 32 32 H 1.00900 * 111.00026 * 146.36463 * 20 19 18 33 33 H 1.09002 * 109.88998 * 118.41597 * 21 20 19 34 34 H 1.09003 * 109.88733 * 239.44258 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9213 -3.5923 -0.8515 12 6 1.4993 -5.0199 -0.0022 13 8 2.4740 -5.8892 0.6181 14 6 3.1131 -5.0760 1.6164 15 1 2.6325 -5.2358 2.5816 16 6 4.5940 -5.4482 1.7117 17 1 5.0948 -4.8495 2.4727 18 6 4.7654 -6.9644 2.0058 19 6 6.1639 -7.2466 1.4020 20 7 6.2260 -6.4083 0.1857 21 6 5.2876 -5.2821 0.3432 22 8 2.9859 -3.6992 1.2372 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 0.5876 -4.9656 0.5927 27 1 1.2802 -5.3427 -1.0199 28 1 3.9965 -7.5475 1.4990 29 1 4.7567 -7.1588 3.0782 30 1 6.2591 -8.3007 1.1417 31 1 6.9470 -6.9572 2.1027 32 1 7.1649 -6.0765 0.0228 33 1 5.8327 -4.3385 0.3157 34 1 4.5446 -5.3043 -0.4542 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260520855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:13 Heat of formation + Delta-G solvation = -96.369207 kcal Electronic energy + Delta-G solvation = -16349.881233 eV Core-core repulsion = 13668.300049 eV Total energy + Delta-G solvation = -2681.581184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15438 -37.81763 -34.56384 -33.23317 -31.57632 -29.92159 -28.82239 -26.63404 -23.98342 -23.22033 -21.27996 -20.60466 -19.96494 -16.90841 -16.71177 -16.25607 -16.02307 -15.40918 -14.55891 -14.44767 -13.62634 -13.30272 -13.02414 -12.69273 -12.43524 -12.33060 -12.04926 -11.77108 -11.60471 -11.32748 -11.11861 -10.94108 -10.66396 -10.55161 -10.45995 -9.73674 -9.59208 -9.12148 -8.82255 -8.40520 -8.37759 -6.02946 -4.03690 3.31264 3.38629 3.44002 3.95670 4.22397 4.42882 4.45730 4.70549 4.87878 5.07851 5.26768 5.32924 5.37375 5.44103 5.55809 5.65791 5.70010 5.75721 5.84171 5.89664 6.02972 6.13565 6.21718 6.40680 6.44898 6.75666 6.88797 7.37196 7.38555 7.57245 7.81480 7.94830 8.35332 9.00763 9.59635 11.08784 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.006593 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.568284 B = 4245.857149 C = 4659.097925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.064 3.936 11 H 0.072 0.928 12 C 0.016 3.984 13 O -0.383 6.383 14 C 0.239 3.761 15 H 0.074 0.926 16 C -0.122 4.122 17 H 0.088 0.912 18 C -0.121 4.121 19 C 0.047 3.953 20 N -0.685 5.685 21 C 0.059 3.941 22 O -0.365 6.365 23 H 0.260 0.740 24 H 0.034 0.966 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.335 0.665 33 H 0.052 0.948 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -12.255 2.660 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.008 3.992 11 H 0.089 0.911 12 C -0.060 4.060 13 O -0.304 6.304 14 C 0.143 3.857 15 H 0.091 0.909 16 C -0.142 4.142 17 H 0.106 0.894 18 C -0.159 4.159 19 C -0.082 4.082 20 N -0.314 5.314 21 C -0.070 4.070 22 O -0.286 6.286 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.150 0.850 33 H 0.071 0.929 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.845 -12.585 2.326 15.011 hybrid contribution 0.770 1.589 0.689 1.895 sum 8.616 -10.996 3.014 14.291 Atomic orbital electron populations 1.69962 1.06039 1.26603 1.51181 1.25003 0.94859 0.99324 0.95353 0.86494 0.80160 0.83605 0.77521 1.19718 1.21039 1.21021 1.21133 0.93224 0.90370 1.50011 0.92283 1.19283 0.93009 0.90941 0.98236 1.24076 0.93446 0.95805 0.85922 0.91059 1.24540 0.92704 0.89678 0.99071 1.89070 1.52592 1.35898 1.52812 1.23739 0.91699 0.78310 0.91959 0.90867 1.22902 0.95673 0.96892 0.98742 0.89395 1.22724 0.97470 0.95197 1.00501 1.22796 0.96421 0.98461 0.90519 1.61870 1.11056 1.21060 1.37407 1.22518 0.95631 0.91953 0.96881 1.89015 1.76379 1.21949 1.41226 0.93013 0.94783 0.95520 0.90927 0.88103 0.89624 0.91062 0.90576 0.94280 0.85000 0.92946 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.42 8.95 -34.44 -0.31 -14.72 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 9 C 0.02 0.56 4.75 -27.88 -0.13 0.43 16 10 C 0.06 1.34 3.45 -25.72 -0.09 1.25 16 11 H 0.07 1.48 8.11 -51.93 -0.42 1.06 16 12 C 0.02 0.28 7.40 38.17 0.28 0.56 16 13 O -0.38 -6.60 9.49 -59.05 -0.56 -7.16 16 14 C 0.24 4.09 3.75 37.15 0.14 4.23 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 16 C -0.12 -1.79 3.13 -88.66 -0.28 -2.06 16 17 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.12 -1.48 6.48 -24.45 -0.16 -1.64 16 19 C 0.05 0.53 7.58 -2.29 -0.02 0.51 16 20 N -0.69 -8.88 7.39 -110.79 -0.82 -9.70 16 21 C 0.06 0.88 6.82 -2.84 -0.02 0.87 16 22 O -0.36 -7.71 10.49 -59.05 -0.62 -8.33 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 27 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.09 1.16 7.28 -51.93 -0.38 0.78 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.33 3.68 8.91 -39.29 -0.35 3.33 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.42 6.96 -51.93 -0.36 1.06 16 LS Contribution 277.93 15.07 4.19 4.19 Total: -1.00 -30.56 277.93 -8.05 -38.61 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.27 Total: 0.66 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.68 Total: -9.08 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.08 Total: -35.70 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.18 Total: -15.49 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.56 -8.05 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.761 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds