Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47195 * 2 1 4 4 C 1.52998 * 109.47252 * 119.99970 * 2 1 3 5 5 C 1.53001 * 109.47424 * 240.00226 * 2 1 3 6 6 C 1.53000 * 110.70232 * 59.29284 * 5 2 1 7 7 C 1.54595 * 110.79527 * 182.63090 * 5 2 1 8 8 C 1.51729 * 102.86746 * 143.41783 * 7 5 2 9 9 O 1.21288 * 126.24184 * 164.79687 * 8 7 5 10 10 N 1.34774 * 107.51516 * 344.79285 * 8 7 5 11 11 C 1.37098 * 124.16567 * 178.82351 * 10 8 7 12 12 H 1.08000 * 119.99614 * 353.83911 * 11 10 8 13 13 C 1.38946 * 120.00352 * 173.84543 * 11 10 8 14 14 N 1.31405 * 119.99896 * 5.95313 * 13 11 10 15 15 Si 1.86799 * 119.99988 * 185.95999 * 13 11 10 16 16 H 1.48498 * 109.46965 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47061 * 119.99373 * 15 13 11 18 18 H 1.48493 * 109.46956 * 239.99539 * 15 13 11 19 19 O 1.41731 * 111.76039 * 358.97828 * 10 8 7 20 20 H 1.08997 * 109.47570 * 59.99707 * 1 2 3 21 21 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47281 * 299.99807 * 1 2 3 23 23 H 1.09002 * 109.46498 * 60.00250 * 3 2 1 24 24 H 1.08994 * 109.46917 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46647 * 300.00299 * 3 2 1 26 26 H 1.09003 * 109.47175 * 60.00337 * 4 2 1 27 27 H 1.09004 * 109.47331 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.47406 * 299.99840 * 4 2 1 29 29 H 1.08996 * 109.46737 * 60.00611 * 6 5 2 30 30 H 1.09000 * 109.46645 * 180.02562 * 6 5 2 31 31 H 1.09001 * 109.47246 * 300.00169 * 6 5 2 32 32 H 1.09000 * 110.73166 * 261.75662 * 7 5 2 33 33 H 1.08998 * 110.73889 * 24.89350 * 7 5 2 34 34 H 0.97002 * 120.00413 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7212 -1.2493 6 6 1.5313 -0.0323 -2.5171 7 6 3.5841 -0.7967 -1.2474 8 6 3.8565 -2.1595 -1.8563 9 8 4.9191 -2.5516 -2.2902 10 7 2.7024 -2.8548 -1.8272 11 6 2.5575 -4.1272 -2.3166 12 1 3.3714 -4.5969 -2.8488 13 6 1.3635 -4.8124 -2.1281 14 7 0.3343 -4.2019 -1.5852 15 14 1.2216 -6.6015 -2.6461 16 1 2.5115 -7.0524 -3.2275 17 1 0.8936 -7.4353 -1.4617 18 1 0.1466 -6.7391 -3.6612 19 8 1.6545 -2.1090 -1.2317 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6766 1.9563 0.8901 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2492 27 1 3.1300 -0.7216 1.2490 28 1 1.6767 -0.2074 2.1392 29 1 1.8843 0.9988 -2.5369 30 1 1.9056 -0.5617 -3.3933 31 1 0.4414 -0.0434 -2.5243 32 1 4.0099 -0.0060 -1.8652 33 1 3.9721 -0.7410 -0.2303 34 1 -0.4992 -4.6803 -1.4532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260620391.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = -28.258896 kcal Electronic energy + Delta-G solvation = -17218.136887 eV Core-core repulsion = 14539.509188 eV Total energy + Delta-G solvation = -2678.627699 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90438 -37.05854 -35.24128 -33.07050 -30.60139 -30.20019 -28.45726 -26.88924 -26.16509 -24.45679 -22.04876 -19.73584 -18.15398 -17.67500 -15.71888 -15.30033 -14.58401 -14.45364 -13.95894 -13.78133 -13.73538 -13.44976 -12.74293 -12.35928 -12.05715 -11.78799 -11.74921 -11.63715 -11.47803 -11.18040 -11.10408 -10.92159 -10.84217 -10.58298 -10.38415 -10.33673 -9.99964 -9.77239 -9.03245 -8.42610 -7.64922 -6.34627 -3.88087 3.12473 3.22417 3.28202 3.58686 3.78853 4.20994 4.91375 4.96959 5.13152 5.20452 5.35055 5.47910 5.59056 5.67626 5.76802 5.85675 5.99274 6.02249 6.08618 6.20372 6.21305 6.26646 6.29528 6.41022 6.52511 6.62436 6.70387 6.85800 6.89614 7.43102 7.91307 8.41025 8.98590 9.33637 9.88286 10.72170 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.010537 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.954324 B = 2656.695346 C = 3117.297316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.141 4.141 4 C -0.144 4.144 5 C 0.077 3.923 6 C -0.157 4.157 7 C -0.169 4.169 8 C 0.426 3.574 9 O -0.581 6.581 10 N -0.295 5.295 11 C -0.318 4.318 12 H 0.123 0.877 13 C 0.041 3.959 14 N -0.838 5.838 15 Si 0.925 3.075 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.279 1.279 19 O -0.090 6.090 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 8.871 3.588 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.049 4.049 3 C -0.198 4.198 4 C -0.201 4.201 5 C 0.036 3.964 6 C -0.214 4.214 7 C -0.210 4.210 8 C 0.214 3.786 9 O -0.468 6.468 10 N -0.057 5.057 11 C -0.443 4.443 12 H 0.141 0.859 13 C -0.167 4.167 14 N -0.473 5.473 15 Si 0.750 3.250 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.205 1.205 19 O -0.092 6.092 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.889 8.467 3.502 9.355 hybrid contribution -0.337 -0.583 -0.221 0.709 sum -2.226 7.884 3.281 8.825 Atomic orbital electron populations 1.21865 0.93961 1.03176 1.00703 1.20435 0.96364 0.94463 0.93681 1.21931 1.01168 0.95050 1.01672 1.21917 1.00751 1.01635 0.95780 1.22579 0.92833 0.86010 0.94982 1.22176 1.02115 0.99661 0.97488 1.23004 0.96066 0.98791 1.03155 1.20171 0.84032 0.87638 0.86760 1.90561 1.25870 1.75571 1.54757 1.45971 1.00345 1.10456 1.48916 1.19862 1.02073 0.85869 1.36452 0.85937 1.25350 0.94969 0.99953 0.96410 1.70006 1.01871 1.36131 1.39323 0.85889 0.78735 0.81954 0.78374 1.18987 1.20362 1.20519 1.91565 1.27903 1.12386 1.77352 0.92742 0.91052 0.93320 0.92521 0.92449 0.92355 0.91156 0.92700 0.93096 0.92034 0.92249 0.91548 0.89277 0.88572 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.02 37.16 0.30 -1.84 16 2 C -0.05 -0.76 0.44 -154.51 -0.07 -0.83 16 3 C -0.14 -1.75 7.96 37.16 0.30 -1.45 16 4 C -0.14 -2.28 8.03 37.16 0.30 -1.99 16 5 C 0.08 1.48 0.37 -89.78 -0.03 1.45 16 6 C -0.16 -2.76 8.21 37.16 0.31 -2.45 16 7 C -0.17 -3.36 4.94 -26.54 -0.13 -3.49 16 8 C 0.43 11.04 8.15 -10.48 -0.09 10.95 16 9 O -0.58 -16.74 17.69 5.55 0.10 -16.64 16 10 N -0.29 -8.05 3.77 -10.63 -0.04 -8.09 16 11 C -0.32 -9.06 9.97 -14.93 -0.15 -9.21 16 12 H 0.12 3.52 7.73 -52.49 -0.41 3.11 16 13 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 14 N -0.84 -23.15 11.79 55.50 0.65 -22.49 16 15 Si 0.92 20.62 29.56 -169.99 -5.02 15.60 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 O -0.09 -2.24 8.41 -11.53 -0.10 -2.33 16 20 H 0.05 0.78 6.52 -51.93 -0.34 0.44 16 21 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 25 H 0.06 0.68 6.55 -51.93 -0.34 0.34 16 26 H 0.07 1.33 7.65 -51.93 -0.40 0.93 16 27 H 0.05 0.85 6.02 -51.93 -0.31 0.54 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.88 6.57 -51.93 -0.34 0.53 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.14 6.54 -51.93 -0.34 0.80 16 32 H 0.09 1.57 7.91 -51.93 -0.41 1.16 16 33 H 0.10 1.75 5.66 -51.93 -0.29 1.46 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 271.35 15.07 4.09 4.09 Total: -1.00 -31.65 271.35 -4.48 -36.13 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.79 Total: 1.59 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 0.64 Total: -7.85 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.61 Total: -30.58 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.00 Total: -18.98 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.65 -4.48 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260620391.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.871 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds