Wall clock time and date at job start Mon Mar 30 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47195 * 2 1 4 4 C 1.52998 * 109.47252 * 119.99970 * 2 1 3 5 5 C 1.53001 * 109.47424 * 240.00226 * 2 1 3 6 6 C 1.53000 * 110.70232 * 59.29284 * 5 2 1 7 7 C 1.54595 * 110.79527 * 182.63090 * 5 2 1 8 8 C 1.51729 * 102.86746 * 143.41783 * 7 5 2 9 9 O 1.21288 * 126.24184 * 164.79687 * 8 7 5 10 10 N 1.34774 * 107.51516 * 344.79285 * 8 7 5 11 11 C 1.37098 * 124.16567 * 178.82351 * 10 8 7 12 12 H 1.08000 * 119.99614 * 353.83911 * 11 10 8 13 13 C 1.38946 * 120.00352 * 173.84543 * 11 10 8 14 14 N 1.31405 * 119.99896 * 5.95313 * 13 11 10 15 15 Si 1.86799 * 119.99988 * 185.95999 * 13 11 10 16 16 H 1.48498 * 109.46965 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47061 * 119.99373 * 15 13 11 18 18 H 1.48493 * 109.46956 * 239.99539 * 15 13 11 19 19 O 1.41731 * 111.76039 * 358.97828 * 10 8 7 20 20 H 1.08997 * 109.47570 * 59.99707 * 1 2 3 21 21 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47281 * 299.99807 * 1 2 3 23 23 H 1.09002 * 109.46498 * 60.00250 * 3 2 1 24 24 H 1.08994 * 109.46917 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46647 * 300.00299 * 3 2 1 26 26 H 1.09003 * 109.47175 * 60.00337 * 4 2 1 27 27 H 1.09004 * 109.47331 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.47406 * 299.99840 * 4 2 1 29 29 H 1.08996 * 109.46737 * 60.00611 * 6 5 2 30 30 H 1.09000 * 109.46645 * 180.02562 * 6 5 2 31 31 H 1.09001 * 109.47246 * 300.00169 * 6 5 2 32 32 H 1.09000 * 110.73166 * 261.75662 * 7 5 2 33 33 H 1.08998 * 110.73889 * 24.89350 * 7 5 2 34 34 H 0.97002 * 120.00413 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7212 -1.2493 6 6 1.5313 -0.0323 -2.5171 7 6 3.5841 -0.7967 -1.2474 8 6 3.8565 -2.1595 -1.8563 9 8 4.9191 -2.5516 -2.2902 10 7 2.7024 -2.8548 -1.8272 11 6 2.5575 -4.1272 -2.3166 12 1 3.3714 -4.5969 -2.8488 13 6 1.3635 -4.8124 -2.1281 14 7 0.3343 -4.2019 -1.5852 15 14 1.2216 -6.6015 -2.6461 16 1 2.5115 -7.0524 -3.2275 17 1 0.8936 -7.4353 -1.4617 18 1 0.1466 -6.7391 -3.6612 19 8 1.6545 -2.1090 -1.2317 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6766 1.9563 0.8901 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2492 27 1 3.1300 -0.7216 1.2490 28 1 1.6767 -0.2074 2.1392 29 1 1.8843 0.9988 -2.5369 30 1 1.9056 -0.5617 -3.3933 31 1 0.4414 -0.0434 -2.5243 32 1 4.0099 -0.0060 -1.8652 33 1 3.9721 -0.7410 -0.2303 34 1 -0.4992 -4.6803 -1.4532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260620391.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:11 Heat of formation + Delta-G solvation = -48.935865 kcal Electronic energy + Delta-G solvation = -17219.033508 eV Core-core repulsion = 14539.509188 eV Total energy + Delta-G solvation = -2679.524320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60854 -38.79843 -37.09364 -35.02207 -32.41996 -31.98022 -29.97619 -27.95490 -27.66023 -26.32580 -23.54275 -21.66790 -20.03171 -19.29669 -17.35335 -17.22349 -16.35977 -16.30868 -15.66283 -15.36348 -15.08532 -15.01390 -14.31725 -13.99842 -13.61568 -13.44884 -13.19047 -12.95428 -12.94165 -12.74902 -12.72665 -12.57297 -12.32884 -12.15734 -12.10996 -11.58764 -11.53546 -11.31632 -10.86025 -10.42956 -9.66934 -8.41431 -6.04871 1.31727 1.37152 1.52495 1.73997 1.85966 2.33779 3.08694 3.33540 3.56855 3.79866 3.90694 3.95466 4.19132 4.35628 4.46709 4.59536 4.73120 4.82327 4.85364 4.91585 4.97629 5.02131 5.10792 5.12788 5.19949 5.25405 5.28538 5.41004 5.56936 5.63576 5.86962 6.38122 6.91551 7.30727 7.83577 8.65602 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.010537 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.954324 B = 2656.695346 C = 3117.297316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 C -0.136 4.136 4 C -0.142 4.142 5 C 0.067 3.933 6 C -0.153 4.153 7 C -0.153 4.153 8 C 0.404 3.596 9 O -0.624 6.624 10 N -0.311 5.311 11 C -0.361 4.361 12 H 0.106 0.894 13 C 0.004 3.996 14 N -0.860 5.860 15 Si 0.997 3.003 16 H -0.265 1.265 17 H -0.268 1.268 18 H -0.267 1.267 19 O -0.110 6.110 20 H 0.063 0.937 21 H 0.030 0.970 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 10.608 4.360 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 C -0.193 4.193 4 C -0.199 4.199 5 C 0.026 3.974 6 C -0.210 4.210 7 C -0.193 4.193 8 C 0.195 3.805 9 O -0.514 6.514 10 N -0.072 5.072 11 C -0.485 4.485 12 H 0.123 0.877 13 C -0.202 4.202 14 N -0.495 5.495 15 Si 0.818 3.182 16 H -0.189 1.189 17 H -0.193 1.193 18 H -0.192 1.192 19 O -0.113 6.113 20 H 0.082 0.918 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.657 10.228 4.284 11.403 hybrid contribution -0.137 -1.071 -0.424 1.160 sum -2.795 9.157 3.861 10.323 Atomic orbital electron populations 1.21827 0.93716 1.01120 1.02629 1.20534 0.96554 0.96203 0.91304 1.21926 1.01661 0.92137 1.03612 1.21901 1.00823 0.99680 0.97479 1.23117 0.92528 0.83904 0.97821 1.22182 1.02157 1.01393 0.95271 1.22998 0.96773 0.95523 1.04048 1.21197 0.83204 0.89804 0.86340 1.90503 1.27232 1.77146 1.56530 1.46106 1.01672 1.10816 1.48575 1.19970 1.02630 0.87732 1.38208 0.87668 1.26251 0.93951 1.04249 0.95752 1.70107 1.02260 1.37883 1.39245 0.84843 0.78832 0.76071 0.78427 1.18947 1.19278 1.19177 1.91516 1.27436 1.15197 1.77145 0.91768 0.95050 0.90450 0.90064 0.91739 0.91052 0.95255 0.92499 0.90021 0.87848 0.95265 0.91426 0.86503 0.86693 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.02 71.98 0.58 -3.28 16 2 C -0.04 -1.29 0.44 -52.18 -0.02 -1.32 16 3 C -0.14 -2.71 7.96 71.98 0.57 -2.14 16 4 C -0.14 -4.26 8.03 71.98 0.58 -3.68 16 5 C 0.07 2.49 0.37 -10.25 0.00 2.49 16 6 C -0.15 -5.13 8.21 71.98 0.59 -4.54 16 7 C -0.15 -5.90 4.94 30.72 0.15 -5.75 16 8 C 0.40 21.55 8.15 87.99 0.72 22.27 16 9 O -0.62 -37.32 17.69 -3.06 -0.05 -37.38 16 10 N -0.31 -17.62 3.77 -305.93 -1.15 -18.77 16 11 C -0.36 -21.47 9.97 84.04 0.84 -20.63 16 12 H 0.11 6.40 7.73 -2.91 -0.02 6.38 16 13 C 0.00 0.22 5.50 84.93 0.47 0.68 16 14 N -0.86 -48.44 11.79 21.66 0.26 -48.18 16 15 Si 1.00 42.88 29.56 68.60 2.03 44.90 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 19 O -0.11 -5.58 8.41 -39.08 -0.33 -5.91 16 20 H 0.06 1.67 6.52 -2.39 -0.02 1.66 16 21 H 0.03 1.13 7.86 -2.39 -0.02 1.11 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.22 7.34 -2.39 -0.02 1.21 16 25 H 0.07 1.26 6.55 -2.39 -0.02 1.25 16 26 H 0.03 1.10 7.65 -2.39 -0.02 1.08 16 27 H 0.06 1.65 6.02 -2.39 -0.01 1.64 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 2.56 6.57 -2.39 -0.02 2.54 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 2.23 6.54 -2.39 -0.02 2.22 16 32 H 0.12 3.83 7.91 -2.39 -0.02 3.81 16 33 H 0.12 3.98 5.66 -2.39 -0.01 3.97 16 34 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -72.32 271.35 6.30 -66.02 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.09 Total: 15.23 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.47 Total: -15.91 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.90 Total: -66.95 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.38 Total: -43.29 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.32 6.30 -66.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260620391.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.088 kcal (2) G-P(sol) polarization free energy of solvation -72.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds