Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.52998 * 109.47399 * 239.99875 * 2 1 3 5 5 N 1.46508 * 109.47282 * 119.99831 * 2 1 3 6 6 C 1.34002 * 125.55718 * 39.74513 * 5 2 1 7 7 O 1.21516 * 123.07289 * 359.97438 * 6 5 2 8 8 O 1.33767 * 113.85939 * 179.70846 * 6 5 2 9 9 C 1.45706 * 109.47478 * 0.27000 * 8 6 5 10 10 C 1.47089 * 125.56141 * 219.90927 * 5 2 1 11 11 C 1.53002 * 110.49427 * 298.79002 * 10 5 2 12 12 C 1.50696 * 110.76406 * 61.58273 * 10 5 2 13 13 H 1.08001 * 119.99897 * 0.60778 * 12 10 5 14 14 C 1.37874 * 120.00366 * 180.60767 * 12 10 5 15 15 N 1.31522 * 119.99945 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00399 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47234 * 89.99869 * 16 14 12 18 18 H 1.48502 * 109.47259 * 210.00173 * 16 14 12 19 19 H 1.48504 * 109.47057 * 330.00221 * 16 14 12 20 20 H 1.08997 * 109.47287 * 299.99628 * 1 2 3 21 21 H 1.08995 * 109.47248 * 60.00703 * 1 2 3 22 22 H 1.09004 * 109.46577 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47513 * 171.76599 * 3 2 1 24 24 H 1.09000 * 109.47404 * 291.77568 * 3 2 1 25 25 H 1.09001 * 109.46875 * 51.76855 * 3 2 1 26 26 H 1.09003 * 109.47366 * 304.63101 * 4 2 1 27 27 H 1.08999 * 109.47412 * 64.63116 * 4 2 1 28 28 H 1.09004 * 109.47428 * 184.63528 * 4 2 1 29 29 H 1.08998 * 110.52272 * 118.62874 * 9 8 6 30 30 H 1.08995 * 110.52417 * 241.36833 * 9 8 6 31 31 H 1.09004 * 109.47116 * 310.33447 * 11 10 5 32 32 H 1.08996 * 109.47302 * 70.33545 * 11 10 5 33 33 H 1.08996 * 109.47312 * 190.33455 * 11 10 5 34 34 H 0.96993 * 120.00302 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 1.4879 -1.8013 1.7260 7 8 0.5197 -2.3639 1.2542 8 8 2.1249 -2.2373 2.8185 9 6 3.2363 -1.3450 3.1213 10 6 3.1689 -0.2760 2.0135 11 6 4.4507 -0.2861 1.1783 12 6 2.9373 1.0890 2.6086 13 1 2.0133 1.6132 2.4140 14 6 3.9050 1.6687 3.4013 15 7 5.0300 1.0301 3.6387 16 14 3.6176 3.3604 4.1395 17 1 2.9682 3.2174 5.4673 18 1 4.9185 4.0591 4.2974 19 1 2.7377 4.1498 3.2406 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 3.1200 1.4460 0.1472 24 1 1.8017 1.9121 -0.9543 25 1 1.5615 1.9970 0.8073 26 1 1.6106 -1.7222 -1.2917 27 1 1.7461 -0.1618 -2.1373 28 1 3.1269 -0.7937 -1.2086 29 1 3.1032 -0.8881 4.1019 30 1 4.1825 -1.8840 3.0751 31 1 4.5336 -1.2367 0.6514 32 1 4.4195 0.5287 0.4549 33 1 5.3123 -0.1574 1.8333 34 1 5.7109 1.4381 4.1962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260627661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = -71.710228 kcal Electronic energy + Delta-G solvation = -17534.562605 eV Core-core repulsion = 14854.050715 eV Total energy + Delta-G solvation = -2680.511890 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71539 -36.83417 -36.32132 -33.76728 -31.72707 -29.41960 -26.99569 -26.80810 -25.62070 -24.95895 -21.80559 -20.59328 -18.69091 -17.14043 -15.73285 -15.53987 -15.23512 -14.64367 -13.99810 -13.80075 -13.48104 -13.02932 -12.83723 -12.53270 -11.98144 -11.83706 -11.70888 -11.41145 -11.23965 -11.11875 -11.02877 -10.81245 -10.72700 -10.57801 -10.17474 -10.04516 -9.62521 -9.23711 -9.12863 -8.72256 -7.80503 -6.34505 -4.42534 3.13875 3.22227 3.24183 3.56809 3.74260 4.17624 4.63935 4.92285 5.32497 5.52070 5.65908 5.85003 6.02719 6.05423 6.17069 6.19315 6.27095 6.36856 6.43176 6.49562 6.63865 6.67173 6.73880 6.78541 6.93489 7.06863 7.19653 7.43368 7.57394 7.73613 7.97274 8.44224 8.67205 9.08171 9.26137 10.69712 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.012295 C = 0.010679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.086266 B = 2276.803058 C = 2621.321221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.206 3.794 3 C -0.152 4.152 4 C -0.158 4.158 5 N -0.605 5.605 6 C 0.640 3.360 7 O -0.563 6.563 8 O -0.355 6.355 9 C 0.062 3.938 10 C 0.252 3.748 11 C -0.141 4.141 12 C -0.521 4.521 13 H 0.074 0.926 14 C 0.069 3.931 15 N -0.886 5.886 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.017 0.983 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 1.139 -4.931 5.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.122 3.878 3 C -0.209 4.209 4 C -0.216 4.216 5 N -0.350 5.350 6 C 0.395 3.605 7 O -0.454 6.454 8 O -0.265 6.265 9 C -0.013 4.013 10 C 0.169 3.831 11 C -0.200 4.200 12 C -0.559 4.559 13 H 0.092 0.908 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.231 0.709 -4.928 5.128 hybrid contribution 0.145 1.035 0.553 1.183 sum -1.086 1.744 -4.375 4.833 Atomic orbital electron populations 1.22288 0.94588 1.04163 1.01129 1.19927 0.93386 0.92118 0.82324 1.22374 1.04247 0.93613 1.00649 1.22262 1.01658 1.00777 0.96926 1.48419 1.32520 1.25966 1.28077 1.18538 0.82181 0.80564 0.79249 1.90828 1.27230 1.63048 1.64260 1.87074 1.44855 1.51625 1.42971 1.24670 0.85841 0.88852 1.01892 1.19386 0.83089 0.94282 0.86358 1.22210 1.00302 0.97804 0.99649 1.21294 1.03500 1.00577 1.30529 0.90820 1.24905 0.94733 0.98169 0.95629 1.69838 1.06720 1.38202 1.37537 0.86416 0.77725 0.83307 0.79639 1.20467 1.21019 1.19670 0.92732 0.92594 0.89874 0.89723 0.93518 0.91108 0.92543 0.92192 0.92246 0.88154 0.90103 0.96393 0.93219 0.88489 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.07 37.16 0.30 -2.63 16 2 C 0.21 3.84 0.98 -131.82 -0.13 3.71 16 3 C -0.15 -2.69 7.07 37.16 0.26 -2.43 16 4 C -0.16 -2.61 8.77 37.16 0.33 -2.28 16 5 N -0.60 -13.08 2.31 -150.55 -0.35 -13.43 16 6 C 0.64 15.23 8.53 53.71 0.46 15.69 16 7 O -0.56 -14.11 15.18 -19.12 -0.29 -14.40 16 8 O -0.35 -8.39 11.09 -37.82 -0.42 -8.81 16 9 C 0.06 1.39 6.83 37.73 0.26 1.65 16 10 C 0.25 5.61 0.55 -132.08 -0.07 5.54 16 11 C -0.14 -2.97 7.45 37.16 0.28 -2.69 16 12 C -0.52 -12.25 6.13 -34.44 -0.21 -12.46 16 13 H 0.07 1.77 5.70 -52.49 -0.30 1.48 16 14 C 0.07 1.63 5.06 -17.82 -0.09 1.54 16 15 N -0.89 -21.27 10.70 55.43 0.59 -20.68 16 16 Si 0.90 19.06 29.54 -169.99 -5.02 14.04 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.08 1.64 5.84 -51.93 -0.30 1.34 16 23 H 0.08 1.62 4.35 -51.93 -0.23 1.39 16 24 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 25 H 0.07 1.35 6.08 -51.93 -0.32 1.03 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.99 7.52 -51.93 -0.39 0.59 16 29 H 0.10 2.33 7.58 -51.93 -0.39 1.94 16 30 H 0.08 1.71 7.73 -51.93 -0.40 1.30 16 31 H 0.02 0.34 8.06 -51.93 -0.42 -0.07 16 32 H 0.05 1.01 5.65 -51.93 -0.29 0.72 16 33 H 0.10 2.17 6.18 -51.93 -0.32 1.85 16 34 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 LS Contribution 263.25 15.07 3.97 3.97 Total: -1.00 -25.81 263.25 -4.75 -30.56 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.61 Total: 3.11 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 1.38 Total: 5.63 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.24 Total: -34.11 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.71 Total: -23.21 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -25.81 -4.75 -30.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.146 kcal (2) G-P(sol) polarization free energy of solvation -25.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds