Wall clock time and date at job start Mon Mar 30 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.52998 * 109.47399 * 239.99875 * 2 1 3 5 5 N 1.46508 * 109.47282 * 119.99831 * 2 1 3 6 6 C 1.34002 * 125.55718 * 39.74513 * 5 2 1 7 7 O 1.21516 * 123.07289 * 359.97438 * 6 5 2 8 8 O 1.33767 * 113.85939 * 179.70846 * 6 5 2 9 9 C 1.45706 * 109.47478 * 0.27000 * 8 6 5 10 10 C 1.47089 * 125.56141 * 219.90927 * 5 2 1 11 11 C 1.53002 * 110.49427 * 298.79002 * 10 5 2 12 12 C 1.50696 * 110.76406 * 61.58273 * 10 5 2 13 13 H 1.08001 * 119.99897 * 0.60778 * 12 10 5 14 14 C 1.37874 * 120.00366 * 180.60767 * 12 10 5 15 15 N 1.31522 * 119.99945 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00399 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47234 * 89.99869 * 16 14 12 18 18 H 1.48502 * 109.47259 * 210.00173 * 16 14 12 19 19 H 1.48504 * 109.47057 * 330.00221 * 16 14 12 20 20 H 1.08997 * 109.47287 * 299.99628 * 1 2 3 21 21 H 1.08995 * 109.47248 * 60.00703 * 1 2 3 22 22 H 1.09004 * 109.46577 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47513 * 171.76599 * 3 2 1 24 24 H 1.09000 * 109.47404 * 291.77568 * 3 2 1 25 25 H 1.09001 * 109.46875 * 51.76855 * 3 2 1 26 26 H 1.09003 * 109.47366 * 304.63101 * 4 2 1 27 27 H 1.08999 * 109.47412 * 64.63116 * 4 2 1 28 28 H 1.09004 * 109.47428 * 184.63528 * 4 2 1 29 29 H 1.08998 * 110.52272 * 118.62874 * 9 8 6 30 30 H 1.08995 * 110.52417 * 241.36833 * 9 8 6 31 31 H 1.09004 * 109.47116 * 310.33447 * 11 10 5 32 32 H 1.08996 * 109.47302 * 70.33545 * 11 10 5 33 33 H 1.08996 * 109.47312 * 190.33455 * 11 10 5 34 34 H 0.96993 * 120.00302 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 1.4879 -1.8013 1.7260 7 8 0.5197 -2.3639 1.2542 8 8 2.1249 -2.2373 2.8185 9 6 3.2363 -1.3450 3.1213 10 6 3.1689 -0.2760 2.0135 11 6 4.4507 -0.2861 1.1783 12 6 2.9373 1.0890 2.6086 13 1 2.0133 1.6132 2.4140 14 6 3.9050 1.6687 3.4013 15 7 5.0300 1.0301 3.6387 16 14 3.6176 3.3604 4.1395 17 1 2.9682 3.2174 5.4673 18 1 4.9185 4.0591 4.2974 19 1 2.7377 4.1498 3.2406 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 3.1200 1.4460 0.1472 24 1 1.8017 1.9121 -0.9543 25 1 1.5615 1.9970 0.8073 26 1 1.6106 -1.7222 -1.2917 27 1 1.7461 -0.1618 -2.1373 28 1 3.1269 -0.7937 -1.2086 29 1 3.1032 -0.8881 4.1019 30 1 4.1825 -1.8840 3.0751 31 1 4.5336 -1.2367 0.6514 32 1 4.4195 0.5287 0.4549 33 1 5.3123 -0.1574 1.8333 34 1 5.7109 1.4381 4.1962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:57 Heat of formation + Delta-G solvation = -85.925372 kcal Electronic energy + Delta-G solvation = -17535.179020 eV Core-core repulsion = 14854.050715 eV Total energy + Delta-G solvation = -2681.128305 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.49454 -38.47634 -38.16372 -35.51753 -33.45396 -31.16047 -28.43653 -28.30516 -27.32593 -26.70294 -23.49486 -22.37224 -20.35190 -18.94234 -17.49761 -17.27331 -17.05259 -16.42948 -15.64737 -15.32269 -15.14777 -14.70957 -14.42773 -14.20958 -13.63879 -13.52392 -13.22667 -12.89698 -12.84165 -12.73866 -12.58868 -12.38495 -12.30734 -12.18138 -11.82814 -11.71608 -11.40120 -10.99156 -10.86915 -10.53338 -9.52496 -8.15765 -6.27850 1.45309 1.50793 1.56529 1.84629 1.92156 2.42065 2.86601 3.09809 3.83777 4.06163 4.11314 4.25047 4.39841 4.56318 4.72323 4.77180 4.85353 4.91025 4.92556 4.94654 5.02526 5.06781 5.12995 5.26038 5.39981 5.49429 5.56913 5.81232 5.84679 5.96532 6.18797 6.61351 6.84485 7.26715 7.42941 8.87258 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.012295 C = 0.010679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.086266 B = 2276.803058 C = 2621.321221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.190 3.810 3 C -0.143 4.143 4 C -0.150 4.150 5 N -0.598 5.598 6 C 0.630 3.370 7 O -0.582 6.582 8 O -0.366 6.366 9 C 0.064 3.936 10 C 0.248 3.752 11 C -0.128 4.128 12 C -0.527 4.527 13 H 0.066 0.934 14 C 0.039 3.961 15 N -0.900 5.900 16 Si 0.951 3.049 17 H -0.285 1.285 18 H -0.283 1.283 19 H -0.270 1.270 20 H 0.039 0.961 21 H 0.092 0.908 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 2.157 -6.113 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 C -0.200 4.200 4 C -0.208 4.208 5 N -0.342 5.342 6 C 0.384 3.616 7 O -0.474 6.474 8 O -0.277 6.277 9 C -0.010 4.010 10 C 0.164 3.836 11 C -0.186 4.186 12 C -0.565 4.565 13 H 0.084 0.916 14 C -0.163 4.163 15 N -0.537 5.537 16 Si 0.777 3.223 17 H -0.211 1.211 18 H -0.209 1.209 19 H -0.195 1.195 20 H 0.058 0.942 21 H 0.110 0.890 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.161 1.740 -6.124 6.471 hybrid contribution 0.108 0.718 0.923 1.175 sum -1.052 2.458 -5.201 5.848 Atomic orbital electron populations 1.22216 0.93997 1.03051 1.02185 1.20380 0.94011 0.92756 0.82047 1.22268 1.02922 0.92814 1.01979 1.22197 1.01323 1.00284 0.97036 1.48635 1.31897 1.25156 1.28541 1.18732 0.82260 0.81190 0.79392 1.90809 1.28011 1.63764 1.64811 1.87043 1.45253 1.52110 1.43267 1.24666 0.85889 0.88992 1.01461 1.19427 0.83867 0.93682 0.86588 1.22045 0.98834 0.98507 0.99244 1.21352 1.03230 1.01042 1.30844 0.91622 1.25377 0.94651 1.00377 0.95888 1.69904 1.07027 1.38982 1.37767 0.85658 0.77438 0.80592 0.78579 1.21111 1.20868 1.19463 0.94208 0.88977 0.91973 0.91132 0.89928 0.92828 0.93862 0.88734 0.92450 0.89405 0.89009 0.95530 0.92584 0.89847 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 8.07 71.98 0.58 -4.74 16 2 C 0.19 6.71 0.98 3.60 0.00 6.71 16 3 C -0.14 -4.70 7.07 71.98 0.51 -4.19 16 4 C -0.15 -4.55 8.77 71.98 0.63 -3.92 16 5 N -0.60 -25.38 2.31 -861.93 -1.99 -27.37 16 6 C 0.63 29.90 8.53 129.91 1.11 31.01 16 7 O -0.58 -29.21 15.18 19.63 0.30 -28.91 16 8 O -0.37 -17.37 11.09 -47.28 -0.52 -17.89 16 9 C 0.06 2.88 6.83 72.35 0.49 3.37 16 10 C 0.25 10.86 0.55 3.11 0.00 10.86 16 11 C -0.13 -5.22 7.45 71.98 0.54 -4.68 16 12 C -0.53 -24.39 6.13 25.60 0.16 -24.23 16 13 H 0.07 3.13 5.70 -2.91 -0.02 3.11 16 14 C 0.04 1.82 5.06 84.65 0.43 2.24 16 15 N -0.90 -42.52 10.70 21.45 0.23 -42.29 16 16 Si 0.95 38.37 29.54 68.60 2.03 40.40 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 20 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 22 H 0.06 2.39 5.84 -2.38 -0.01 2.38 16 23 H 0.07 2.54 4.35 -2.39 -0.01 2.53 16 24 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 25 H 0.05 1.94 6.08 -2.39 -0.01 1.93 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 1.75 7.52 -2.39 -0.02 1.73 16 29 H 0.09 4.11 7.58 -2.39 -0.02 4.09 16 30 H 0.09 3.84 7.73 -2.39 -0.02 3.82 16 31 H 0.03 1.00 8.06 -2.38 -0.02 0.98 16 32 H 0.06 2.19 5.65 -2.39 -0.01 2.17 16 33 H 0.08 3.66 6.18 -2.39 -0.01 3.64 16 34 H 0.27 12.28 8.31 -92.71 -0.77 11.51 16 Total: -1.00 -53.52 263.25 5.58 -47.94 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.10 Total: 15.70 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 4.45 Total: 12.42 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -1.76 Total: -69.66 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.23 Total: -46.80 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -53.52 5.58 -47.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.986 kcal (2) G-P(sol) polarization free energy of solvation -53.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds