Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 C 1.52994 * 109.47069 * 239.99647 * 2 1 3 5 5 N 1.46502 * 109.46979 * 119.99711 * 2 1 3 6 6 C 1.34007 * 125.55789 * 228.07974 * 5 2 1 7 7 O 1.21512 * 123.06824 * 0.02562 * 6 5 2 8 8 O 1.34067 * 113.90023 * 180.11733 * 6 5 2 9 9 C 1.45701 * 109.30563 * 359.87241 * 8 6 5 10 10 C 1.47093 * 125.55882 * 48.12549 * 5 2 1 11 11 C 1.52998 * 110.56432 * 61.39215 * 10 5 2 12 12 C 1.50695 * 110.56532 * 298.53476 * 10 5 2 13 13 H 1.07998 * 120.00171 * 359.72698 * 12 10 5 14 14 C 1.37877 * 120.00166 * 179.72870 * 12 10 5 15 15 N 1.31516 * 119.99870 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00163 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47200 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47212 * 120.00005 * 16 14 12 19 19 H 1.48500 * 109.46710 * 239.99663 * 16 14 12 20 20 H 1.09001 * 109.46791 * 308.97197 * 1 2 3 21 21 H 1.08995 * 109.47072 * 68.97221 * 1 2 3 22 22 H 1.09003 * 109.46658 * 188.97172 * 1 2 3 23 23 H 1.08998 * 109.47293 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.46916 * 299.99693 * 3 2 1 25 25 H 1.08995 * 109.47446 * 59.99777 * 3 2 1 26 26 H 1.08998 * 109.47499 * 306.04283 * 4 2 1 27 27 H 1.09006 * 109.46777 * 66.03958 * 4 2 1 28 28 H 1.09001 * 109.47109 * 186.03494 * 4 2 1 29 29 H 1.09002 * 110.51844 * 241.41550 * 9 8 6 30 30 H 1.09002 * 110.51779 * 118.82225 * 9 8 6 31 31 H 1.09004 * 109.46903 * 168.75355 * 11 10 5 32 32 H 1.09006 * 109.46987 * 288.75020 * 11 10 5 33 33 H 1.08997 * 109.47365 * 48.75290 * 11 10 5 34 34 H 0.97000 * 119.99853 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.9648 -0.2340 2.0278 7 8 3.5297 0.8301 1.8692 8 8 3.2336 -1.0588 3.0500 9 6 2.3879 -2.2410 2.9502 10 6 1.5504 -1.9985 1.6798 11 6 1.8253 -3.0860 0.6392 12 6 0.0824 -1.9444 2.0158 13 1 -0.4667 -1.0229 1.8902 14 6 -0.5598 -3.0712 2.4836 15 7 0.1088 -4.1935 2.6360 16 14 -2.3797 -3.0043 2.8994 17 1 -2.8963 -1.6362 2.6417 18 1 -3.1164 -3.9793 2.0557 19 1 -2.5728 -3.3442 4.3320 20 1 -0.3633 0.6464 0.7990 21 1 -0.3633 0.3687 -0.9592 22 1 -0.3633 -1.0151 0.1603 23 1 3.1300 1.4426 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.5911 -1.7130 -1.3049 27 1 1.7677 -0.1488 -2.1359 28 1 3.1247 -0.8158 -1.1968 29 1 1.7416 -2.3233 3.8241 30 1 2.9971 -3.1384 2.8409 31 1 1.6597 -4.0664 1.0858 32 1 1.1537 -2.9550 -0.2093 33 1 2.8584 -3.0112 0.2998 34 1 -0.3431 -4.9864 2.9648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260627663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = -67.368350 kcal Electronic energy + Delta-G solvation = -17541.450787 eV Core-core repulsion = 14861.127175 eV Total energy + Delta-G solvation = -2680.323612 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70720 -36.84429 -36.32867 -33.72786 -31.73588 -29.41166 -27.28431 -26.83785 -25.36533 -24.94101 -21.79806 -20.59764 -18.75418 -17.14099 -15.74836 -15.49927 -15.23676 -14.65499 -14.03406 -13.63269 -13.46712 -13.20252 -12.78150 -12.40400 -12.02461 -11.84112 -11.73581 -11.47006 -11.24760 -11.14358 -11.02815 -10.83811 -10.66829 -10.56768 -10.15781 -10.02782 -9.54613 -9.22835 -9.02414 -8.71928 -7.79593 -6.36055 -4.43435 3.11854 3.22084 3.25068 3.56457 3.74205 4.16797 4.65764 4.90615 5.31906 5.52430 5.66835 5.84521 6.04651 6.07846 6.18699 6.23162 6.26250 6.39631 6.43943 6.48408 6.66031 6.71216 6.76474 6.79372 6.95488 7.10856 7.16791 7.37305 7.57650 7.72191 7.97342 8.43290 8.66701 9.07954 9.25154 10.68287 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028680 B = 0.012309 C = 0.010682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.064514 B = 2274.252397 C = 2620.667830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.204 3.796 3 C -0.146 4.146 4 C -0.161 4.161 5 N -0.604 5.604 6 C 0.638 3.362 7 O -0.562 6.562 8 O -0.355 6.355 9 C 0.062 3.938 10 C 0.252 3.748 11 C -0.138 4.138 12 C -0.528 4.528 13 H 0.082 0.918 14 C 0.069 3.931 15 N -0.884 5.884 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.052 0.948 21 H 0.047 0.953 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 1.752 -4.795 5.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.121 3.879 3 C -0.203 4.203 4 C -0.219 4.219 5 N -0.349 5.349 6 C 0.393 3.607 7 O -0.452 6.452 8 O -0.266 6.266 9 C -0.013 4.013 10 C 0.169 3.831 11 C -0.196 4.196 12 C -0.566 4.566 13 H 0.100 0.900 14 C -0.135 4.135 15 N -0.521 5.521 16 Si 0.728 3.272 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.122 0.878 23 H 0.095 0.905 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.131 2.102 -4.638 5.094 hybrid contribution -1.090 -0.294 0.305 1.169 sum -0.958 1.808 -4.333 4.792 Atomic orbital electron populations 1.22602 0.93936 1.05748 1.00075 1.19978 0.94183 0.91235 0.82544 1.22175 1.03140 0.94188 1.00789 1.22397 1.01195 1.01698 0.96583 1.48368 1.38479 1.22316 1.25729 1.18656 0.79731 0.83384 0.78922 1.90872 1.57742 1.20818 1.75811 1.87167 1.60591 1.33127 1.45690 1.24656 0.91079 0.83742 1.01848 1.19396 0.94799 0.79214 0.89714 1.22184 0.96954 1.01960 0.98531 1.21517 0.92471 0.97860 1.44792 0.89986 1.24945 0.98872 0.95094 0.94547 1.69864 1.36407 1.01030 1.44786 0.86368 0.84131 0.78421 0.78240 1.19506 1.20752 1.20769 0.92902 0.93413 0.87828 0.90512 0.93157 0.92449 0.91064 0.92406 0.92963 0.88205 0.90143 0.88725 0.93311 0.96323 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 7.15 37.16 0.27 -2.71 16 2 C 0.20 3.81 1.20 -131.82 -0.16 3.65 16 3 C -0.15 -2.62 7.08 37.16 0.26 -2.36 16 4 C -0.16 -2.63 8.06 37.15 0.30 -2.33 16 5 N -0.60 -13.09 2.44 -150.46 -0.37 -13.45 16 6 C 0.64 15.19 8.70 53.71 0.47 15.66 16 7 O -0.56 -14.03 14.14 -19.10 -0.27 -14.30 16 8 O -0.35 -8.39 11.11 -38.59 -0.43 -8.82 16 9 C 0.06 1.38 6.81 37.72 0.26 1.63 16 10 C 0.25 5.61 0.70 -132.08 -0.09 5.52 16 11 C -0.14 -2.89 6.89 37.16 0.26 -2.63 16 12 C -0.53 -12.40 5.99 -34.44 -0.21 -12.61 16 13 H 0.08 1.95 5.17 -52.49 -0.27 1.68 16 14 C 0.07 1.63 5.05 -17.82 -0.09 1.54 16 15 N -0.88 -21.21 10.73 55.43 0.59 -20.61 16 16 Si 0.90 18.98 29.54 -169.99 -5.02 13.96 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16 21 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 22 H 0.10 2.05 5.29 -51.93 -0.27 1.78 16 23 H 0.08 1.50 6.40 -51.93 -0.33 1.17 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.11 7.79 -51.93 -0.40 0.71 16 26 H 0.07 1.19 5.36 -51.93 -0.28 0.91 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 2.32 7.57 -51.93 -0.39 1.93 16 30 H 0.08 1.70 7.73 -51.93 -0.40 1.30 16 31 H 0.09 2.12 6.25 -51.93 -0.32 1.79 16 32 H 0.05 0.99 6.19 -51.93 -0.32 0.67 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 LS Contribution 261.31 15.07 3.94 3.94 Total: -1.00 -25.74 261.31 -4.94 -30.67 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.65 Total: 3.25 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 1.26 Total: 5.37 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.23 Total: -34.07 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.70 Total: -23.12 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.74 -4.94 -30.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.694 kcal (2) G-P(sol) polarization free energy of solvation -25.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds