Wall clock time and date at job start Mon Mar 30 2020 03:29:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.52996 * 109.46833 * 2 1
4 4 C 1.52994 * 109.47069 * 239.99647 * 2 1 3
5 5 N 1.46502 * 109.46979 * 119.99711 * 2 1 3
6 6 C 1.34007 * 125.55789 * 228.07974 * 5 2 1
7 7 O 1.21512 * 123.06824 * 0.02562 * 6 5 2
8 8 O 1.34067 * 113.90023 * 180.11733 * 6 5 2
9 9 C 1.45701 * 109.30563 * 359.87241 * 8 6 5
10 10 C 1.47093 * 125.55882 * 48.12549 * 5 2 1
11 11 C 1.52998 * 110.56432 * 61.39215 * 10 5 2
12 12 C 1.50695 * 110.56532 * 298.53476 * 10 5 2
13 13 H 1.07998 * 120.00171 * 359.72698 * 12 10 5
14 14 C 1.37877 * 120.00166 * 179.72870 * 12 10 5
15 15 N 1.31516 * 119.99870 * 359.97438 * 14 12 10
16 16 Si 1.86800 * 120.00163 * 180.02562 * 14 12 10
17 17 H 1.48493 * 109.47200 * 359.97438 * 16 14 12
18 18 H 1.48497 * 109.47212 * 120.00005 * 16 14 12
19 19 H 1.48500 * 109.46710 * 239.99663 * 16 14 12
20 20 H 1.09001 * 109.46791 * 308.97197 * 1 2 3
21 21 H 1.08995 * 109.47072 * 68.97221 * 1 2 3
22 22 H 1.09003 * 109.46658 * 188.97172 * 1 2 3
23 23 H 1.08998 * 109.47293 * 180.02562 * 3 2 1
24 24 H 1.09006 * 109.46916 * 299.99693 * 3 2 1
25 25 H 1.08995 * 109.47446 * 59.99777 * 3 2 1
26 26 H 1.08998 * 109.47499 * 306.04283 * 4 2 1
27 27 H 1.09006 * 109.46777 * 66.03958 * 4 2 1
28 28 H 1.09001 * 109.47109 * 186.03494 * 4 2 1
29 29 H 1.09002 * 110.51844 * 241.41550 * 9 8 6
30 30 H 1.09002 * 110.51779 * 118.82225 * 9 8 6
31 31 H 1.09004 * 109.46903 * 168.75355 * 11 10 5
32 32 H 1.09006 * 109.46987 * 288.75020 * 11 10 5
33 33 H 1.08997 * 109.47365 * 48.75290 * 11 10 5
34 34 H 0.97000 * 119.99853 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 2.0184 -0.6906 1.1962
6 6 2.9648 -0.2340 2.0278
7 8 3.5297 0.8301 1.8692
8 8 3.2336 -1.0588 3.0500
9 6 2.3879 -2.2410 2.9502
10 6 1.5504 -1.9985 1.6798
11 6 1.8253 -3.0860 0.6392
12 6 0.0824 -1.9444 2.0158
13 1 -0.4667 -1.0229 1.8902
14 6 -0.5598 -3.0712 2.4836
15 7 0.1088 -4.1935 2.6360
16 14 -2.3797 -3.0043 2.8994
17 1 -2.8963 -1.6362 2.6417
18 1 -3.1164 -3.9793 2.0557
19 1 -2.5728 -3.3442 4.3320
20 1 -0.3633 0.6464 0.7990
21 1 -0.3633 0.3687 -0.9592
22 1 -0.3633 -1.0151 0.1603
23 1 3.1300 1.4426 -0.0005
24 1 1.6767 1.9563 -0.8901
25 1 1.6767 1.9563 0.8899
26 1 1.5911 -1.7130 -1.3049
27 1 1.7677 -0.1488 -2.1359
28 1 3.1247 -0.8158 -1.1968
29 1 1.7416 -2.3233 3.8241
30 1 2.9971 -3.1384 2.8409
31 1 1.6597 -4.0664 1.0858
32 1 1.1537 -2.9550 -0.2093
33 1 2.8584 -3.0112 0.2998
34 1 -0.3431 -4.9864 2.9648
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260627663.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:00
Heat of formation + Delta-G solvation = -67.368350 kcal
Electronic energy + Delta-G solvation = -17541.450787 eV
Core-core repulsion = 14861.127175 eV
Total energy + Delta-G solvation = -2680.323612 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.70720 -36.84429 -36.32867 -33.72786 -31.73588 -29.41166 -27.28431 -26.83785
-25.36533 -24.94101 -21.79806 -20.59764 -18.75418 -17.14099 -15.74836 -15.49927
-15.23676 -14.65499 -14.03406 -13.63269 -13.46712 -13.20252 -12.78150 -12.40400
-12.02461 -11.84112 -11.73581 -11.47006 -11.24760 -11.14358 -11.02815 -10.83811
-10.66829 -10.56768 -10.15781 -10.02782 -9.54613 -9.22835 -9.02414 -8.71928
-7.79593 -6.36055 -4.43435 3.11854 3.22084 3.25068 3.56457 3.74205
4.16797 4.65764 4.90615 5.31906 5.52430 5.66835 5.84521 6.04651
6.07846 6.18699 6.23162 6.26250 6.39631 6.43943 6.48408 6.66031
6.71216 6.76474 6.79372 6.95488 7.10856 7.16791 7.37305 7.57650
7.72191 7.97342 8.43290 8.66701 9.07954 9.25154 10.68287
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.028680 B = 0.012309 C = 0.010682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 976.064514 B = 2274.252397 C = 2620.667830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.204 3.796
3 C -0.146 4.146
4 C -0.161 4.161
5 N -0.604 5.604
6 C 0.638 3.362
7 O -0.562 6.562
8 O -0.355 6.355
9 C 0.062 3.938
10 C 0.252 3.748
11 C -0.138 4.138
12 C -0.528 4.528
13 H 0.082 0.918
14 C 0.069 3.931
15 N -0.884 5.884
16 Si 0.901 3.099
17 H -0.271 1.271
18 H -0.282 1.282
19 H -0.282 1.282
20 H 0.052 0.948
21 H 0.047 0.953
22 H 0.103 0.897
23 H 0.076 0.924
24 H 0.050 0.950
25 H 0.056 0.944
26 H 0.071 0.929
27 H 0.057 0.943
28 H 0.051 0.949
29 H 0.100 0.900
30 H 0.080 0.920
31 H 0.094 0.906
32 H 0.048 0.952
33 H 0.018 0.982
34 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.269 1.752 -4.795 5.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.121 3.879
3 C -0.203 4.203
4 C -0.219 4.219
5 N -0.349 5.349
6 C 0.393 3.607
7 O -0.452 6.452
8 O -0.266 6.266
9 C -0.013 4.013
10 C 0.169 3.831
11 C -0.196 4.196
12 C -0.566 4.566
13 H 0.100 0.900
14 C -0.135 4.135
15 N -0.521 5.521
16 Si 0.728 3.272
17 H -0.195 1.195
18 H -0.208 1.208
19 H -0.208 1.208
20 H 0.071 0.929
21 H 0.066 0.934
22 H 0.122 0.878
23 H 0.095 0.905
24 H 0.068 0.932
25 H 0.076 0.924
26 H 0.089 0.911
27 H 0.076 0.924
28 H 0.070 0.930
29 H 0.118 0.882
30 H 0.099 0.901
31 H 0.113 0.887
32 H 0.067 0.933
33 H 0.037 0.963
34 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 0.131 2.102 -4.638 5.094
hybrid contribution -1.090 -0.294 0.305 1.169
sum -0.958 1.808 -4.333 4.792
Atomic orbital electron populations
1.22602 0.93936 1.05748 1.00075 1.19978 0.94183 0.91235 0.82544
1.22175 1.03140 0.94188 1.00789 1.22397 1.01195 1.01698 0.96583
1.48368 1.38479 1.22316 1.25729 1.18656 0.79731 0.83384 0.78922
1.90872 1.57742 1.20818 1.75811 1.87167 1.60591 1.33127 1.45690
1.24656 0.91079 0.83742 1.01848 1.19396 0.94799 0.79214 0.89714
1.22184 0.96954 1.01960 0.98531 1.21517 0.92471 0.97860 1.44792
0.89986 1.24945 0.98872 0.95094 0.94547 1.69864 1.36407 1.01030
1.44786 0.86368 0.84131 0.78421 0.78240 1.19506 1.20752 1.20769
0.92902 0.93413 0.87828 0.90512 0.93157 0.92449 0.91064 0.92406
0.92963 0.88205 0.90143 0.88725 0.93311 0.96323 0.92296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.97 7.15 37.16 0.27 -2.71 16
2 C 0.20 3.81 1.20 -131.82 -0.16 3.65 16
3 C -0.15 -2.62 7.08 37.16 0.26 -2.36 16
4 C -0.16 -2.63 8.06 37.15 0.30 -2.33 16
5 N -0.60 -13.09 2.44 -150.46 -0.37 -13.45 16
6 C 0.64 15.19 8.70 53.71 0.47 15.66 16
7 O -0.56 -14.03 14.14 -19.10 -0.27 -14.30 16
8 O -0.35 -8.39 11.11 -38.59 -0.43 -8.82 16
9 C 0.06 1.38 6.81 37.72 0.26 1.63 16
10 C 0.25 5.61 0.70 -132.08 -0.09 5.52 16
11 C -0.14 -2.89 6.89 37.16 0.26 -2.63 16
12 C -0.53 -12.40 5.99 -34.44 -0.21 -12.61 16
13 H 0.08 1.95 5.17 -52.49 -0.27 1.68 16
14 C 0.07 1.63 5.05 -17.82 -0.09 1.54 16
15 N -0.88 -21.21 10.73 55.43 0.59 -20.61 16
16 Si 0.90 18.98 29.54 -169.99 -5.02 13.96 16
17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16
18 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16
19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
20 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16
21 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16
22 H 0.10 2.05 5.29 -51.93 -0.27 1.78 16
23 H 0.08 1.50 6.40 -51.93 -0.33 1.17 16
24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
25 H 0.06 1.11 7.79 -51.93 -0.40 0.71 16
26 H 0.07 1.19 5.36 -51.93 -0.28 0.91 16
27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16
29 H 0.10 2.32 7.57 -51.93 -0.39 1.93 16
30 H 0.08 1.70 7.73 -51.93 -0.40 1.30 16
31 H 0.09 2.12 6.25 -51.93 -0.32 1.79 16
32 H 0.05 0.99 6.19 -51.93 -0.32 0.67 16
33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
34 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16
LS Contribution 261.31 15.07 3.94 3.94
Total: -1.00 -25.74 261.31 -4.94 -30.67
By element:
Atomic # 1 Polarization: 7.89 SS G_CDS: -4.65 Total: 3.25 kcal
Atomic # 6 Polarization: 4.11 SS G_CDS: 1.26 Total: 5.37 kcal
Atomic # 7 Polarization: -34.30 SS G_CDS: 0.23 Total: -34.07 kcal
Atomic # 8 Polarization: -22.42 SS G_CDS: -0.70 Total: -23.12 kcal
Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -25.74 -4.94 -30.67 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260627663.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.694 kcal
(2) G-P(sol) polarization free energy of solvation -25.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.368 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds