Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 C 1.52994 * 109.47069 * 239.99647 * 2 1 3 5 5 N 1.46502 * 109.46979 * 119.99711 * 2 1 3 6 6 C 1.34007 * 125.55789 * 228.07974 * 5 2 1 7 7 O 1.21512 * 123.06824 * 0.02562 * 6 5 2 8 8 O 1.34067 * 113.90023 * 180.11733 * 6 5 2 9 9 C 1.45701 * 109.30563 * 359.87241 * 8 6 5 10 10 C 1.47093 * 125.55882 * 48.12549 * 5 2 1 11 11 C 1.52998 * 110.56432 * 61.39215 * 10 5 2 12 12 C 1.50695 * 110.56532 * 298.53476 * 10 5 2 13 13 H 1.07998 * 120.00171 * 359.72698 * 12 10 5 14 14 C 1.37877 * 120.00166 * 179.72870 * 12 10 5 15 15 N 1.31516 * 119.99870 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00163 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47200 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47212 * 120.00005 * 16 14 12 19 19 H 1.48500 * 109.46710 * 239.99663 * 16 14 12 20 20 H 1.09001 * 109.46791 * 308.97197 * 1 2 3 21 21 H 1.08995 * 109.47072 * 68.97221 * 1 2 3 22 22 H 1.09003 * 109.46658 * 188.97172 * 1 2 3 23 23 H 1.08998 * 109.47293 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.46916 * 299.99693 * 3 2 1 25 25 H 1.08995 * 109.47446 * 59.99777 * 3 2 1 26 26 H 1.08998 * 109.47499 * 306.04283 * 4 2 1 27 27 H 1.09006 * 109.46777 * 66.03958 * 4 2 1 28 28 H 1.09001 * 109.47109 * 186.03494 * 4 2 1 29 29 H 1.09002 * 110.51844 * 241.41550 * 9 8 6 30 30 H 1.09002 * 110.51779 * 118.82225 * 9 8 6 31 31 H 1.09004 * 109.46903 * 168.75355 * 11 10 5 32 32 H 1.09006 * 109.46987 * 288.75020 * 11 10 5 33 33 H 1.08997 * 109.47365 * 48.75290 * 11 10 5 34 34 H 0.97000 * 119.99853 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.9648 -0.2340 2.0278 7 8 3.5297 0.8301 1.8692 8 8 3.2336 -1.0588 3.0500 9 6 2.3879 -2.2410 2.9502 10 6 1.5504 -1.9985 1.6798 11 6 1.8253 -3.0860 0.6392 12 6 0.0824 -1.9444 2.0158 13 1 -0.4667 -1.0229 1.8902 14 6 -0.5598 -3.0712 2.4836 15 7 0.1088 -4.1935 2.6360 16 14 -2.3797 -3.0043 2.8994 17 1 -2.8963 -1.6362 2.6417 18 1 -3.1164 -3.9793 2.0557 19 1 -2.5728 -3.3442 4.3320 20 1 -0.3633 0.6464 0.7990 21 1 -0.3633 0.3687 -0.9592 22 1 -0.3633 -1.0151 0.1603 23 1 3.1300 1.4426 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.5911 -1.7130 -1.3049 27 1 1.7677 -0.1488 -2.1359 28 1 3.1247 -0.8158 -1.1968 29 1 1.7416 -2.3233 3.8241 30 1 2.9971 -3.1384 2.8409 31 1 1.6597 -4.0664 1.0858 32 1 1.1537 -2.9550 -0.2093 33 1 2.8584 -3.0112 0.2998 34 1 -0.3431 -4.9864 2.9648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = -81.619618 kcal Electronic energy + Delta-G solvation = -17542.068769 eV Core-core repulsion = 14861.127175 eV Total energy + Delta-G solvation = -2680.941593 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.48414 -38.50622 -38.14991 -35.47739 -33.45999 -31.14771 -28.77905 -28.34000 -27.02357 -26.68007 -23.48859 -22.37383 -20.41472 -18.93875 -17.54597 -17.19301 -17.04898 -16.43451 -15.66886 -15.17228 -15.11959 -14.83318 -14.46637 -14.08239 -13.67192 -13.52573 -13.26693 -13.01414 -12.80809 -12.74349 -12.57904 -12.45055 -12.20911 -12.18257 -11.79309 -11.70973 -11.29954 -10.99444 -10.76841 -10.51010 -9.51217 -8.16594 -6.27855 1.44200 1.51021 1.57998 1.83908 1.92355 2.41900 2.88101 3.08961 3.82377 4.06361 4.11394 4.25640 4.40129 4.61499 4.73171 4.80054 4.85866 4.88670 4.91817 4.98596 5.03004 5.09267 5.12431 5.31343 5.38077 5.51546 5.63196 5.71106 5.84640 5.95938 6.19535 6.60788 6.84550 7.26607 7.42723 8.86819 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028680 B = 0.012309 C = 0.010682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.064514 B = 2274.252397 C = 2620.667830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.188 3.812 3 C -0.136 4.136 4 C -0.153 4.153 5 N -0.598 5.598 6 C 0.628 3.372 7 O -0.580 6.580 8 O -0.366 6.366 9 C 0.064 3.936 10 C 0.247 3.753 11 C -0.124 4.124 12 C -0.535 4.535 13 H 0.076 0.924 14 C 0.039 3.961 15 N -0.899 5.899 16 Si 0.951 3.049 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.287 1.287 20 H 0.039 0.961 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 1.917 -6.149 6.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 C -0.194 4.194 4 C -0.211 4.211 5 N -0.342 5.342 6 C 0.382 3.618 7 O -0.472 6.472 8 O -0.277 6.277 9 C -0.011 4.011 10 C 0.164 3.836 11 C -0.182 4.182 12 C -0.573 4.573 13 H 0.094 0.906 14 C -0.164 4.164 15 N -0.536 5.536 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.213 1.213 20 H 0.058 0.942 21 H 0.101 0.899 22 H 0.103 0.897 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.639 2.263 -6.010 6.453 hybrid contribution -0.851 -0.324 0.728 1.167 sum -1.490 1.938 -5.281 5.820 Atomic orbital electron populations 1.22481 0.93116 1.04398 1.01529 1.20431 0.94859 0.91733 0.82356 1.22075 1.01865 0.93884 1.01549 1.22326 1.00570 1.01731 0.96485 1.48584 1.37498 1.22038 1.26063 1.18862 0.80294 0.83355 0.79270 1.90854 1.58561 1.21482 1.76309 1.87136 1.60942 1.33542 1.46097 1.24647 0.91058 0.83736 1.01618 1.19447 0.94309 0.79890 0.89968 1.22014 0.97582 1.00529 0.98089 1.21606 0.93019 0.97702 1.44943 0.90581 1.25425 1.01459 0.94938 0.94557 1.69929 1.37292 1.01279 1.45096 0.85593 0.80928 0.78116 0.77550 1.19661 1.20473 1.21286 0.94230 0.89926 0.89701 0.92320 0.89441 0.94553 0.91421 0.89061 0.93675 0.89467 0.89083 0.90084 0.92768 0.95434 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 7.15 71.99 0.51 -4.77 16 2 C 0.19 6.66 1.20 3.60 0.00 6.66 16 3 C -0.14 -4.65 7.08 71.98 0.51 -4.14 16 4 C -0.15 -4.57 8.06 71.98 0.58 -3.99 16 5 N -0.60 -25.40 2.44 -861.49 -2.10 -27.50 16 6 C 0.63 29.81 8.70 129.91 1.13 30.94 16 7 O -0.58 -29.00 14.14 19.63 0.28 -28.73 16 8 O -0.37 -17.38 11.11 -50.09 -0.56 -17.94 16 9 C 0.06 2.86 6.81 72.35 0.49 3.35 16 10 C 0.25 10.84 0.70 3.11 0.00 10.84 16 11 C -0.12 -5.04 6.89 71.98 0.50 -4.54 16 12 C -0.53 -24.72 5.99 25.60 0.15 -24.57 16 13 H 0.08 3.58 5.17 -2.91 -0.02 3.56 16 14 C 0.04 1.78 5.05 84.65 0.43 2.21 16 15 N -0.90 -42.49 10.73 21.45 0.23 -42.26 16 16 Si 0.95 38.28 29.54 68.60 2.03 40.30 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 20 H 0.04 1.40 7.65 -2.39 -0.02 1.38 16 21 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 22 H 0.08 3.21 5.29 -2.39 -0.01 3.19 16 23 H 0.06 2.22 6.40 -2.39 -0.02 2.20 16 24 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.04 1.36 7.79 -2.39 -0.02 1.35 16 26 H 0.07 2.07 5.36 -2.39 -0.01 2.05 16 27 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 4.09 7.57 -2.39 -0.02 4.07 16 30 H 0.09 3.82 7.73 -2.39 -0.02 3.80 16 31 H 0.08 3.55 6.25 -2.39 -0.01 3.53 16 32 H 0.05 2.11 6.19 -2.38 -0.01 2.10 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.27 12.23 8.31 -92.71 -0.77 11.46 16 Total: -1.00 -53.36 261.31 5.28 -48.08 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 1.09 Total: 16.04 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 4.31 Total: 12.00 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.87 Total: -69.76 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.28 Total: -46.66 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.30 kcal Total: -53.36 5.28 -48.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.539 kcal (2) G-P(sol) polarization free energy of solvation -53.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds