Wall clock time and date at job start Mon Mar 30 2020 03:29:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.52996 * 109.46833 * 2 1
4 4 C 1.52994 * 109.47069 * 239.99647 * 2 1 3
5 5 N 1.46502 * 109.46979 * 119.99711 * 2 1 3
6 6 C 1.34007 * 125.55789 * 228.07974 * 5 2 1
7 7 O 1.21512 * 123.06824 * 0.02562 * 6 5 2
8 8 O 1.34067 * 113.90023 * 180.11733 * 6 5 2
9 9 C 1.45701 * 109.30563 * 359.87241 * 8 6 5
10 10 C 1.47093 * 125.55882 * 48.12549 * 5 2 1
11 11 C 1.52998 * 110.56432 * 61.39215 * 10 5 2
12 12 C 1.50695 * 110.56532 * 298.53476 * 10 5 2
13 13 H 1.07998 * 120.00171 * 359.72698 * 12 10 5
14 14 C 1.37877 * 120.00166 * 179.72870 * 12 10 5
15 15 N 1.31516 * 119.99870 * 359.97438 * 14 12 10
16 16 Si 1.86800 * 120.00163 * 180.02562 * 14 12 10
17 17 H 1.48493 * 109.47200 * 359.97438 * 16 14 12
18 18 H 1.48497 * 109.47212 * 120.00005 * 16 14 12
19 19 H 1.48500 * 109.46710 * 239.99663 * 16 14 12
20 20 H 1.09001 * 109.46791 * 308.97197 * 1 2 3
21 21 H 1.08995 * 109.47072 * 68.97221 * 1 2 3
22 22 H 1.09003 * 109.46658 * 188.97172 * 1 2 3
23 23 H 1.08998 * 109.47293 * 180.02562 * 3 2 1
24 24 H 1.09006 * 109.46916 * 299.99693 * 3 2 1
25 25 H 1.08995 * 109.47446 * 59.99777 * 3 2 1
26 26 H 1.08998 * 109.47499 * 306.04283 * 4 2 1
27 27 H 1.09006 * 109.46777 * 66.03958 * 4 2 1
28 28 H 1.09001 * 109.47109 * 186.03494 * 4 2 1
29 29 H 1.09002 * 110.51844 * 241.41550 * 9 8 6
30 30 H 1.09002 * 110.51779 * 118.82225 * 9 8 6
31 31 H 1.09004 * 109.46903 * 168.75355 * 11 10 5
32 32 H 1.09006 * 109.46987 * 288.75020 * 11 10 5
33 33 H 1.08997 * 109.47365 * 48.75290 * 11 10 5
34 34 H 0.97000 * 119.99853 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 2.0184 -0.6906 1.1962
6 6 2.9648 -0.2340 2.0278
7 8 3.5297 0.8301 1.8692
8 8 3.2336 -1.0588 3.0500
9 6 2.3879 -2.2410 2.9502
10 6 1.5504 -1.9985 1.6798
11 6 1.8253 -3.0860 0.6392
12 6 0.0824 -1.9444 2.0158
13 1 -0.4667 -1.0229 1.8902
14 6 -0.5598 -3.0712 2.4836
15 7 0.1088 -4.1935 2.6360
16 14 -2.3797 -3.0043 2.8994
17 1 -2.8963 -1.6362 2.6417
18 1 -3.1164 -3.9793 2.0557
19 1 -2.5728 -3.3442 4.3320
20 1 -0.3633 0.6464 0.7990
21 1 -0.3633 0.3687 -0.9592
22 1 -0.3633 -1.0151 0.1603
23 1 3.1300 1.4426 -0.0005
24 1 1.6767 1.9563 -0.8901
25 1 1.6767 1.9563 0.8899
26 1 1.5911 -1.7130 -1.3049
27 1 1.7677 -0.1488 -2.1359
28 1 3.1247 -0.8158 -1.1968
29 1 1.7416 -2.3233 3.8241
30 1 2.9971 -3.1384 2.8409
31 1 1.6597 -4.0664 1.0858
32 1 1.1537 -2.9550 -0.2093
33 1 2.8584 -3.0112 0.2998
34 1 -0.3431 -4.9864 2.9648
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260627663.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:00
Heat of formation + Delta-G solvation = -81.619618 kcal
Electronic energy + Delta-G solvation = -17542.068769 eV
Core-core repulsion = 14861.127175 eV
Total energy + Delta-G solvation = -2680.941593 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-42.48414 -38.50622 -38.14991 -35.47739 -33.45999 -31.14771 -28.77905 -28.34000
-27.02357 -26.68007 -23.48859 -22.37383 -20.41472 -18.93875 -17.54597 -17.19301
-17.04898 -16.43451 -15.66886 -15.17228 -15.11959 -14.83318 -14.46637 -14.08239
-13.67192 -13.52573 -13.26693 -13.01414 -12.80809 -12.74349 -12.57904 -12.45055
-12.20911 -12.18257 -11.79309 -11.70973 -11.29954 -10.99444 -10.76841 -10.51010
-9.51217 -8.16594 -6.27855 1.44200 1.51021 1.57998 1.83908 1.92355
2.41900 2.88101 3.08961 3.82377 4.06361 4.11394 4.25640 4.40129
4.61499 4.73171 4.80054 4.85866 4.88670 4.91817 4.98596 5.03004
5.09267 5.12431 5.31343 5.38077 5.51546 5.63196 5.71106 5.84640
5.95938 6.19535 6.60788 6.84550 7.26607 7.42723 8.86819
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.028680 B = 0.012309 C = 0.010682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 976.064514 B = 2274.252397 C = 2620.667830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.188 3.812
3 C -0.136 4.136
4 C -0.153 4.153
5 N -0.598 5.598
6 C 0.628 3.372
7 O -0.580 6.580
8 O -0.366 6.366
9 C 0.064 3.936
10 C 0.247 3.753
11 C -0.124 4.124
12 C -0.535 4.535
13 H 0.076 0.924
14 C 0.039 3.961
15 N -0.899 5.899
16 Si 0.951 3.049
17 H -0.272 1.272
18 H -0.279 1.279
19 H -0.287 1.287
20 H 0.039 0.961
21 H 0.082 0.918
22 H 0.084 0.916
23 H 0.058 0.942
24 H 0.087 0.913
25 H 0.035 0.965
26 H 0.067 0.933
27 H 0.091 0.909
28 H 0.044 0.956
29 H 0.087 0.913
30 H 0.091 0.909
31 H 0.081 0.919
32 H 0.053 0.947
33 H 0.027 0.973
34 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.029 1.917 -6.149 6.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.106 3.894
3 C -0.194 4.194
4 C -0.211 4.211
5 N -0.342 5.342
6 C 0.382 3.618
7 O -0.472 6.472
8 O -0.277 6.277
9 C -0.011 4.011
10 C 0.164 3.836
11 C -0.182 4.182
12 C -0.573 4.573
13 H 0.094 0.906
14 C -0.164 4.164
15 N -0.536 5.536
16 Si 0.778 3.222
17 H -0.197 1.197
18 H -0.205 1.205
19 H -0.213 1.213
20 H 0.058 0.942
21 H 0.101 0.899
22 H 0.103 0.897
23 H 0.077 0.923
24 H 0.106 0.894
25 H 0.054 0.946
26 H 0.086 0.914
27 H 0.109 0.891
28 H 0.063 0.937
29 H 0.105 0.895
30 H 0.109 0.891
31 H 0.099 0.901
32 H 0.072 0.928
33 H 0.046 0.954
34 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -0.639 2.263 -6.010 6.453
hybrid contribution -0.851 -0.324 0.728 1.167
sum -1.490 1.938 -5.281 5.820
Atomic orbital electron populations
1.22481 0.93116 1.04398 1.01529 1.20431 0.94859 0.91733 0.82356
1.22075 1.01865 0.93884 1.01549 1.22326 1.00570 1.01731 0.96485
1.48584 1.37498 1.22038 1.26063 1.18862 0.80294 0.83355 0.79270
1.90854 1.58561 1.21482 1.76309 1.87136 1.60942 1.33542 1.46097
1.24647 0.91058 0.83736 1.01618 1.19447 0.94309 0.79890 0.89968
1.22014 0.97582 1.00529 0.98089 1.21606 0.93019 0.97702 1.44943
0.90581 1.25425 1.01459 0.94938 0.94557 1.69929 1.37292 1.01279
1.45096 0.85593 0.80928 0.78116 0.77550 1.19661 1.20473 1.21286
0.94230 0.89926 0.89701 0.92320 0.89441 0.94553 0.91421 0.89061
0.93675 0.89467 0.89083 0.90084 0.92768 0.95434 0.92241
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.29 7.15 71.99 0.51 -4.77 16
2 C 0.19 6.66 1.20 3.60 0.00 6.66 16
3 C -0.14 -4.65 7.08 71.98 0.51 -4.14 16
4 C -0.15 -4.57 8.06 71.98 0.58 -3.99 16
5 N -0.60 -25.40 2.44 -861.49 -2.10 -27.50 16
6 C 0.63 29.81 8.70 129.91 1.13 30.94 16
7 O -0.58 -29.00 14.14 19.63 0.28 -28.73 16
8 O -0.37 -17.38 11.11 -50.09 -0.56 -17.94 16
9 C 0.06 2.86 6.81 72.35 0.49 3.35 16
10 C 0.25 10.84 0.70 3.11 0.00 10.84 16
11 C -0.12 -5.04 6.89 71.98 0.50 -4.54 16
12 C -0.53 -24.72 5.99 25.60 0.15 -24.57 16
13 H 0.08 3.58 5.17 -2.91 -0.02 3.56 16
14 C 0.04 1.78 5.05 84.65 0.43 2.21 16
15 N -0.90 -42.49 10.73 21.45 0.23 -42.26 16
16 Si 0.95 38.28 29.54 68.60 2.03 40.30 16
17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16
18 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16
19 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16
20 H 0.04 1.40 7.65 -2.39 -0.02 1.38 16
21 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16
22 H 0.08 3.21 5.29 -2.39 -0.01 3.19 16
23 H 0.06 2.22 6.40 -2.39 -0.02 2.20 16
24 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16
25 H 0.04 1.36 7.79 -2.39 -0.02 1.35 16
26 H 0.07 2.07 5.36 -2.39 -0.01 2.05 16
27 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16
28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
29 H 0.09 4.09 7.57 -2.39 -0.02 4.07 16
30 H 0.09 3.82 7.73 -2.39 -0.02 3.80 16
31 H 0.08 3.55 6.25 -2.39 -0.01 3.53 16
32 H 0.05 2.11 6.19 -2.38 -0.01 2.10 16
33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
34 H 0.27 12.23 8.31 -92.71 -0.77 11.46 16
Total: -1.00 -53.36 261.31 5.28 -48.08
By element:
Atomic # 1 Polarization: 14.95 SS G_CDS: 1.09 Total: 16.04 kcal
Atomic # 6 Polarization: 7.69 SS G_CDS: 4.31 Total: 12.00 kcal
Atomic # 7 Polarization: -67.89 SS G_CDS: -1.87 Total: -69.76 kcal
Atomic # 8 Polarization: -46.38 SS G_CDS: -0.28 Total: -46.66 kcal
Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.30 kcal
Total: -53.36 5.28 -48.08 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260627663.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.539 kcal
(2) G-P(sol) polarization free energy of solvation -53.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.903 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.620 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds