Wall clock time and date at job start Mon Mar 30 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47026 * 2 1 4 4 C 1.52997 * 109.47319 * 120.00144 * 2 1 3 5 5 C 1.53003 * 110.70491 * 308.33006 * 4 2 1 6 6 C 1.54596 * 110.79661 * 184.99934 * 4 2 1 7 7 C 1.51722 * 102.86899 * 216.58529 * 6 4 2 8 8 O 1.21277 * 126.24133 * 195.20301 * 7 6 4 9 9 N 1.34781 * 107.51537 * 15.20161 * 7 6 4 10 10 C 1.46497 * 124.16150 * 181.18220 * 9 7 6 11 11 C 1.50694 * 109.47115 * 75.02512 * 10 9 7 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 O 1.41459 * 111.67587 * 1.44900 * 9 7 6 20 20 H 1.09010 * 109.47245 * 299.99587 * 1 2 3 21 21 H 1.09000 * 109.47332 * 59.99179 * 1 2 3 22 22 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46867 * 240.00420 * 2 1 3 24 24 H 1.08992 * 109.47408 * 300.00582 * 3 2 1 25 25 H 1.09007 * 109.47004 * 60.00603 * 3 2 1 26 26 H 1.09000 * 109.46918 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47431 * 297.36888 * 5 4 2 28 28 H 1.09006 * 109.46954 * 57.36915 * 5 4 2 29 29 H 1.08997 * 109.46905 * 177.36441 * 5 4 2 30 30 H 1.08996 * 110.73782 * 98.23896 * 6 4 2 31 31 H 1.09004 * 110.88630 * 334.99754 * 6 4 2 32 32 H 1.09007 * 109.47078 * 315.02151 * 10 9 7 33 33 H 1.09003 * 109.46733 * 195.02874 * 10 9 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.3835 -0.1519 2.5085 6 6 3.5804 -0.6310 1.3447 7 6 3.9636 -1.9842 1.9137 8 8 5.0347 -2.2806 2.3992 9 7 2.8965 -2.7969 1.7811 10 6 2.8608 -4.1887 2.2370 11 6 2.7276 -4.2225 3.7376 12 1 2.6752 -3.2996 4.2961 13 6 2.6737 -5.4318 4.3979 14 7 2.7380 -6.5557 3.7179 15 14 2.5093 -5.4736 6.2582 16 1 2.4729 -6.8845 6.7202 17 1 3.6695 -4.7805 6.8734 18 1 1.2540 -4.7893 6.6597 19 8 1.8174 -2.1423 1.1423 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8898 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6575 0.8972 2.6185 28 1 0.3001 -0.2376 2.4238 29 1 1.7250 -0.7101 3.3802 30 1 3.8789 0.1704 2.0205 31 1 4.0231 -0.4874 0.3590 32 1 3.7822 -4.6912 1.9425 33 1 2.0092 -4.6973 1.7850 34 1 2.7004 -7.4064 4.1825 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260747617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:27 Heat of formation + Delta-G solvation = -37.900470 kcal Electronic energy + Delta-G solvation = -16556.793169 eV Core-core repulsion = 13877.747380 eV Total energy + Delta-G solvation = -2679.045789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22564 -37.31090 -35.48779 -33.33132 -31.26501 -30.70474 -28.57044 -27.14524 -26.23991 -23.43136 -22.54709 -19.95287 -18.86348 -16.73975 -16.22920 -16.01080 -15.53359 -14.71981 -14.41572 -14.26224 -13.70170 -13.30231 -13.15806 -12.70976 -12.53630 -12.30940 -11.96728 -11.84204 -11.58258 -11.48997 -11.26821 -11.03468 -10.89974 -10.73954 -10.66118 -10.21418 -10.19289 -9.66394 -9.01919 -8.50245 -7.67144 -6.11381 -4.16875 2.80226 3.25021 3.31424 3.34594 3.39607 4.31251 4.41077 4.56145 4.75783 4.93753 4.95482 5.19200 5.23540 5.28966 5.45799 5.56984 5.63881 5.73161 5.82212 5.89349 5.94304 6.01155 6.07338 6.19050 6.32803 6.47950 6.98123 7.15986 7.37494 7.83873 8.04907 8.23463 8.74915 8.92806 9.47757 10.96524 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.037510 B = 0.007507 C = 0.007196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.294180 B = 3728.887168 C = 3889.975933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.147 4.147 4 C 0.090 3.910 5 C -0.164 4.164 6 C -0.178 4.178 7 C 0.504 3.496 8 O -0.518 6.518 9 N -0.459 5.459 10 C 0.271 3.729 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.285 1.285 17 H -0.274 1.274 18 H -0.276 1.276 19 O -0.152 6.152 20 H 0.060 0.940 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 14.282 -6.867 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.204 4.204 4 C 0.050 3.950 5 C -0.221 4.221 6 C -0.218 4.218 7 C 0.290 3.710 8 O -0.395 6.395 9 N -0.238 5.238 10 C 0.156 3.844 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.731 3.269 16 H -0.210 1.210 17 H -0.200 1.200 18 H -0.201 1.201 19 O -0.155 6.155 20 H 0.079 0.921 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.644 13.694 -6.670 15.662 hybrid contribution -0.210 0.027 1.009 1.031 sum -3.854 13.721 -5.661 15.335 Atomic orbital electron populations 1.21903 0.94394 1.02661 1.01678 1.21126 0.96777 0.95844 0.96264 1.21893 1.01429 0.94926 1.02200 1.22629 0.93562 0.82445 0.96402 1.22239 1.01874 1.00808 0.97197 1.23165 0.95926 0.98739 1.04007 1.20604 0.83995 0.86728 0.79705 1.90728 1.23177 1.79313 1.46318 1.51102 1.04284 1.12362 1.56041 1.19548 0.99182 0.71012 0.94677 1.21376 1.51388 0.92970 0.91281 0.92159 1.24912 0.94801 0.95112 0.99075 1.69916 1.49826 0.97532 1.36065 0.86455 0.78794 0.77067 0.84566 1.20997 1.19982 1.20120 1.90985 1.34422 1.16498 1.73613 0.92105 0.92680 0.91861 0.90136 0.92130 0.92140 0.92149 0.91340 0.91055 0.91402 0.87719 0.87704 0.93008 0.93399 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.58 37.16 0.32 -1.27 16 2 C -0.08 -0.92 2.46 -90.62 -0.22 -1.15 16 3 C -0.15 -1.29 8.72 37.16 0.32 -0.97 16 4 C 0.09 1.35 0.67 -89.78 -0.06 1.29 16 5 C -0.16 -2.30 8.20 37.16 0.30 -1.99 16 6 C -0.18 -2.77 4.96 -26.54 -0.13 -2.91 16 7 C 0.50 11.20 8.09 -10.48 -0.08 11.12 16 8 O -0.52 -13.45 17.81 5.56 0.10 -13.35 16 9 N -0.46 -10.74 3.71 -61.10 -0.23 -10.97 16 10 C 0.27 7.35 5.98 -5.20 -0.03 7.32 16 11 C -0.53 -15.43 9.27 -34.44 -0.32 -15.75 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 15 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 O -0.15 -3.03 11.71 -11.40 -0.13 -3.16 16 20 H 0.06 0.61 6.36 -51.92 -0.33 0.28 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.50 6.85 -51.92 -0.36 0.14 16 26 H 0.06 0.51 6.86 -51.93 -0.36 0.16 16 27 H 0.07 0.76 6.92 -51.93 -0.36 0.40 16 28 H 0.07 0.94 6.29 -51.93 -0.33 0.61 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.43 7.91 -51.93 -0.41 1.02 16 31 H 0.10 1.40 7.46 -51.93 -0.39 1.01 16 32 H 0.05 1.50 8.14 -51.92 -0.42 1.08 16 33 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -32.34 281.48 -5.33 -37.67 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.03 Total: -3.10 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 0.00 Total: -2.59 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.51 Total: -36.75 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.03 Total: -16.51 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.34 -5.33 -37.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260747617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.232 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds