Wall clock time and date at job start Mon Mar 30 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46993 * 240.00467 * 3 2 1 5 5 H 1.48497 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47192 * 120.00181 * 3 2 1 7 7 C 1.37881 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99891 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.46958 * 184.99490 * 9 7 2 11 11 C 1.46835 * 110.99910 * 295.07666 * 10 9 7 12 12 C 1.53190 * 109.47695 * 185.44654 * 11 10 9 13 13 H 1.08999 * 109.93758 * 179.54219 * 12 11 10 14 14 C 1.53232 * 109.04849 * 58.35995 * 12 11 10 15 15 O 1.42893 * 109.34690 * 299.97944 * 14 12 11 16 16 C 1.42894 * 114.28865 * 299.33647 * 15 14 12 17 17 C 1.53228 * 109.36832 * 60.64998 * 16 15 14 18 18 H 1.09005 * 110.40788 * 180.95641 * 17 16 15 19 19 C 1.46831 * 111.00349 * 59.54429 * 10 9 7 20 20 C 1.53442 * 108.70075 * 301.62875 * 17 16 15 21 21 O 1.42901 * 109.72231 * 178.56799 * 20 17 16 22 22 H 0.96992 * 120.00047 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46885 * 64.99488 * 9 7 2 24 24 H 1.08998 * 109.46767 * 304.99311 * 9 7 2 25 25 H 1.08998 * 109.46896 * 65.44702 * 11 10 9 26 26 H 1.08997 * 109.46988 * 305.44724 * 11 10 9 27 27 H 1.09005 * 109.49193 * 59.93861 * 14 12 11 28 28 H 1.08995 * 109.49468 * 179.97438 * 14 12 11 29 29 H 1.08996 * 109.48465 * 300.67868 * 16 15 14 30 30 H 1.09004 * 109.48496 * 180.61680 * 16 15 14 31 31 H 1.09002 * 109.47163 * 54.54213 * 19 10 9 32 32 H 1.09005 * 109.47525 * 294.53638 * 19 10 9 33 33 H 1.08999 * 109.72479 * 299.18876 * 20 17 16 34 34 H 0.96702 * 113.99579 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2012 -3.6130 0.1194 11 6 3.0756 -3.6879 -1.0578 12 6 3.9574 -4.9368 -0.9605 13 1 4.6042 -5.0041 -1.8352 14 6 3.0608 -6.1755 -0.8623 15 8 2.2386 -6.0737 0.3020 16 6 2.9654 -5.9984 1.5300 17 6 3.8591 -4.7538 1.5161 18 1 4.4347 -4.6889 2.4395 19 6 2.9803 -3.5090 1.3596 20 6 4.8076 -4.8427 0.3133 21 8 5.6298 -3.6750 0.2602 22 1 -0.4850 0.8400 0.0004 23 1 0.6929 -2.5964 -0.9317 24 1 0.5594 -2.5193 0.8416 25 1 3.7066 -2.8000 -1.0987 26 1 2.4665 -3.7426 -1.9599 27 1 2.4296 -6.2389 -1.7487 28 1 3.6812 -7.0690 -0.7932 29 1 3.5838 -6.8890 1.6416 30 1 2.2657 -5.9344 2.3633 31 1 2.3020 -3.4338 2.2096 32 1 3.6116 -2.6213 1.3189 33 1 5.4343 -5.7299 0.4037 34 1 6.2537 -3.6666 -0.4785 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260941789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:56 Heat of formation + Delta-G solvation = -82.722915 kcal Electronic energy + Delta-G solvation = -17226.156496 eV Core-core repulsion = 14545.167060 eV Total energy + Delta-G solvation = -2680.989436 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21826 -36.31157 -35.53913 -32.63460 -32.22779 -31.11865 -26.62669 -26.01281 -24.14103 -23.76420 -21.78870 -20.73388 -18.20278 -16.90769 -16.38794 -15.73280 -15.48687 -14.90453 -14.55586 -14.28807 -13.75696 -13.64663 -12.96842 -12.67956 -12.38381 -11.96651 -11.76855 -11.17181 -11.02742 -10.90880 -10.74932 -10.44613 -10.39278 -10.15292 -9.95302 -9.69861 -9.54319 -9.19653 -9.03723 -8.34588 -6.84741 -5.91999 -4.02176 3.33643 3.37984 3.41334 4.25606 4.46423 4.47738 4.88980 5.07248 5.15971 5.26978 5.31899 5.34881 5.42129 5.61542 5.77167 5.94989 6.03352 6.05019 6.06060 6.23964 6.36400 6.53145 6.72646 6.83052 6.99695 7.42963 7.64901 7.73646 7.84942 8.00857 8.22783 8.43406 8.49657 9.10409 9.64224 11.11066 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036966 B = 0.009125 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.267803 B = 3067.694319 C = 3343.401631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.189 3.811 10 N -0.519 5.519 11 C 0.079 3.921 12 C -0.160 4.160 13 H 0.074 0.926 14 C 0.082 3.918 15 O -0.342 6.342 16 C 0.082 3.918 17 C -0.121 4.121 18 H 0.079 0.921 19 C 0.079 3.921 20 C 0.113 3.887 21 O -0.556 6.556 22 H 0.261 0.739 23 H 0.025 0.975 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.085 -11.688 -0.194 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.064 3.936 10 N -0.243 5.243 11 C -0.050 4.050 12 C -0.180 4.180 13 H 0.093 0.907 14 C 0.005 3.995 15 O -0.259 6.259 16 C 0.004 3.996 17 C -0.140 4.140 18 H 0.097 0.903 19 C -0.049 4.049 20 C 0.054 3.946 21 O -0.360 6.360 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 8.075 -11.845 0.359 14.340 hybrid contribution 1.670 1.717 -0.594 2.468 sum 9.745 -10.127 -0.235 14.057 Atomic orbital electron populations 1.69939 1.05966 1.26730 1.50535 1.24965 0.94730 0.99011 0.95134 0.86732 0.79665 0.83477 0.78564 1.20400 1.21306 1.20339 1.21814 0.93418 0.92227 1.51109 0.92473 1.19699 0.90955 0.85386 0.97578 1.62380 1.16652 1.45436 0.99833 1.21699 0.94404 0.94052 0.94872 1.22762 0.98371 0.98938 0.97910 0.90725 1.22314 0.93384 0.93873 0.89947 1.88060 1.31489 1.93625 1.12688 1.22374 0.94745 0.93993 0.88459 1.22099 0.96227 0.98622 0.97058 0.90253 1.21700 0.94987 0.94203 0.94046 1.21862 0.90395 0.86946 0.95422 1.86600 1.53515 1.42877 1.53010 0.92902 0.95705 0.94906 0.94108 0.92077 0.89227 0.94877 0.94798 0.88845 0.91978 0.93549 0.93725 0.78345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.55 -15.54 7.71 -34.44 -0.27 -15.81 16 8 H 0.06 1.64 5.87 -52.49 -0.31 1.33 16 9 C 0.19 5.08 5.12 -4.98 -0.03 5.06 16 10 N -0.52 -11.56 3.08 -235.95 -0.73 -12.29 16 11 C 0.08 1.57 4.43 -3.76 -0.02 1.55 16 12 C -0.16 -2.43 3.12 -90.17 -0.28 -2.72 16 13 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 14 C 0.08 1.19 6.27 37.28 0.23 1.43 16 15 O -0.34 -5.89 9.03 -35.23 -0.32 -6.21 16 16 C 0.08 1.21 6.26 37.28 0.23 1.45 16 17 C -0.12 -1.97 3.13 -90.18 -0.28 -2.25 16 18 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 19 C 0.08 1.65 4.35 -3.77 -0.02 1.64 16 20 C 0.11 1.68 3.15 -26.27 -0.08 1.60 16 21 O -0.56 -8.78 11.94 -35.23 -0.42 -9.20 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.91 6.37 -51.93 -0.33 0.57 16 26 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 32 H 0.05 1.10 6.24 -51.93 -0.32 0.77 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.37 4.17 9.10 45.56 0.41 4.58 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -31.93 262.52 -6.72 -38.65 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.33 Total: 0.50 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.60 Total: -6.30 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.01 Total: -38.51 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.74 Total: -15.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.93 -6.72 -38.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260941789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.070 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds