Wall clock time and date at job start Mon Mar 30 2020 03:14:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86804 * 119.99914 * 2 1
4 4 H 1.48500 * 109.46993 * 240.00467 * 3 2 1
5 5 H 1.48497 * 109.47019 * 0.02562 * 3 2 1
6 6 H 1.48491 * 109.47192 * 120.00181 * 3 2 1
7 7 C 1.37881 * 120.00220 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99965 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99891 * 359.97438 * 7 2 1
10 10 N 1.46895 * 109.46958 * 184.99490 * 9 7 2
11 11 C 1.46835 * 110.99910 * 295.07666 * 10 9 7
12 12 C 1.53190 * 109.47695 * 185.44654 * 11 10 9
13 13 H 1.08999 * 109.93758 * 179.54219 * 12 11 10
14 14 C 1.53232 * 109.04849 * 58.35995 * 12 11 10
15 15 O 1.42893 * 109.34690 * 299.97944 * 14 12 11
16 16 C 1.42894 * 114.28865 * 299.33647 * 15 14 12
17 17 C 1.53228 * 109.36832 * 60.64998 * 16 15 14
18 18 H 1.09005 * 110.40788 * 180.95641 * 17 16 15
19 19 C 1.46831 * 111.00349 * 59.54429 * 10 9 7
20 20 C 1.53442 * 108.70075 * 301.62875 * 17 16 15
21 21 O 1.42901 * 109.72231 * 178.56799 * 20 17 16
22 22 H 0.96992 * 120.00047 * 359.97438 * 1 2 3
23 23 H 1.09001 * 109.46885 * 64.99488 * 9 7 2
24 24 H 1.08998 * 109.46767 * 304.99311 * 9 7 2
25 25 H 1.08998 * 109.46896 * 65.44702 * 11 10 9
26 26 H 1.08997 * 109.46988 * 305.44724 * 11 10 9
27 27 H 1.09005 * 109.49193 * 59.93861 * 14 12 11
28 28 H 1.08995 * 109.49468 * 179.97438 * 14 12 11
29 29 H 1.08996 * 109.48465 * 300.67868 * 16 15 14
30 30 H 1.09004 * 109.48496 * 180.61680 * 16 15 14
31 31 H 1.09002 * 109.47163 * 54.54213 * 19 10 9
32 32 H 1.09005 * 109.47525 * 294.53638 * 19 10 9
33 33 H 1.08999 * 109.72479 * 299.18876 * 20 17 16
34 34 H 0.96702 * 113.99579 * 180.02562 * 21 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2126
5 1 1.2841 2.7465 0.0006
6 1 3.1028 1.6965 1.2124
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 7 2.2012 -3.6130 0.1194
11 6 3.0756 -3.6879 -1.0578
12 6 3.9574 -4.9368 -0.9605
13 1 4.6042 -5.0041 -1.8352
14 6 3.0608 -6.1755 -0.8623
15 8 2.2386 -6.0737 0.3020
16 6 2.9654 -5.9984 1.5300
17 6 3.8591 -4.7538 1.5161
18 1 4.4347 -4.6889 2.4395
19 6 2.9803 -3.5090 1.3596
20 6 4.8076 -4.8427 0.3133
21 8 5.6298 -3.6750 0.2602
22 1 -0.4850 0.8400 0.0004
23 1 0.6929 -2.5964 -0.9317
24 1 0.5594 -2.5193 0.8416
25 1 3.7066 -2.8000 -1.0987
26 1 2.4665 -3.7426 -1.9599
27 1 2.4296 -6.2389 -1.7487
28 1 3.6812 -7.0690 -0.7932
29 1 3.5838 -6.8890 1.6416
30 1 2.2657 -5.9344 2.3633
31 1 2.3020 -3.4338 2.2096
32 1 3.6116 -2.6213 1.3189
33 1 5.4343 -5.7299 0.4037
34 1 6.2537 -3.6666 -0.4785
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260941789.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:56
Heat of formation + Delta-G solvation = -82.722915 kcal
Electronic energy + Delta-G solvation = -17226.156496 eV
Core-core repulsion = 14545.167060 eV
Total energy + Delta-G solvation = -2680.989436 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.21826 -36.31157 -35.53913 -32.63460 -32.22779 -31.11865 -26.62669 -26.01281
-24.14103 -23.76420 -21.78870 -20.73388 -18.20278 -16.90769 -16.38794 -15.73280
-15.48687 -14.90453 -14.55586 -14.28807 -13.75696 -13.64663 -12.96842 -12.67956
-12.38381 -11.96651 -11.76855 -11.17181 -11.02742 -10.90880 -10.74932 -10.44613
-10.39278 -10.15292 -9.95302 -9.69861 -9.54319 -9.19653 -9.03723 -8.34588
-6.84741 -5.91999 -4.02176 3.33643 3.37984 3.41334 4.25606 4.46423
4.47738 4.88980 5.07248 5.15971 5.26978 5.31899 5.34881 5.42129
5.61542 5.77167 5.94989 6.03352 6.05019 6.06060 6.23964 6.36400
6.53145 6.72646 6.83052 6.99695 7.42963 7.64901 7.73646 7.84942
8.00857 8.22783 8.43406 8.49657 9.10409 9.64224 11.11066
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.036966 B = 0.009125 C = 0.008373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 757.267803 B = 3067.694319 C = 3343.401631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.064 3.936
3 Si 0.888 3.112
4 H -0.278 1.278
5 H -0.287 1.287
6 H -0.278 1.278
7 C -0.546 4.546
8 H 0.057 0.943
9 C 0.189 3.811
10 N -0.519 5.519
11 C 0.079 3.921
12 C -0.160 4.160
13 H 0.074 0.926
14 C 0.082 3.918
15 O -0.342 6.342
16 C 0.082 3.918
17 C -0.121 4.121
18 H 0.079 0.921
19 C 0.079 3.921
20 C 0.113 3.887
21 O -0.556 6.556
22 H 0.261 0.739
23 H 0.025 0.975
24 H 0.033 0.967
25 H 0.041 0.959
26 H 0.061 0.939
27 H 0.090 0.910
28 H 0.033 0.967
29 H 0.034 0.966
30 H 0.093 0.907
31 H 0.062 0.938
32 H 0.046 0.954
33 H 0.045 0.955
34 H 0.370 0.630
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.085 -11.688 -0.194 14.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.138 4.138
3 Si 0.716 3.284
4 H -0.204 1.204
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.586 4.586
8 H 0.075 0.925
9 C 0.064 3.936
10 N -0.243 5.243
11 C -0.050 4.050
12 C -0.180 4.180
13 H 0.093 0.907
14 C 0.005 3.995
15 O -0.259 6.259
16 C 0.004 3.996
17 C -0.140 4.140
18 H 0.097 0.903
19 C -0.049 4.049
20 C 0.054 3.946
21 O -0.360 6.360
22 H 0.071 0.929
23 H 0.043 0.957
24 H 0.051 0.949
25 H 0.059 0.941
26 H 0.079 0.921
27 H 0.108 0.892
28 H 0.051 0.949
29 H 0.052 0.948
30 H 0.112 0.888
31 H 0.080 0.920
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.217 0.783
Dipole moment (debyes) X Y Z Total
from point charges 8.075 -11.845 0.359 14.340
hybrid contribution 1.670 1.717 -0.594 2.468
sum 9.745 -10.127 -0.235 14.057
Atomic orbital electron populations
1.69939 1.05966 1.26730 1.50535 1.24965 0.94730 0.99011 0.95134
0.86732 0.79665 0.83477 0.78564 1.20400 1.21306 1.20339 1.21814
0.93418 0.92227 1.51109 0.92473 1.19699 0.90955 0.85386 0.97578
1.62380 1.16652 1.45436 0.99833 1.21699 0.94404 0.94052 0.94872
1.22762 0.98371 0.98938 0.97910 0.90725 1.22314 0.93384 0.93873
0.89947 1.88060 1.31489 1.93625 1.12688 1.22374 0.94745 0.93993
0.88459 1.22099 0.96227 0.98622 0.97058 0.90253 1.21700 0.94987
0.94203 0.94046 1.21862 0.90395 0.86946 0.95422 1.86600 1.53515
1.42877 1.53010 0.92902 0.95705 0.94906 0.94108 0.92077 0.89227
0.94877 0.94798 0.88845 0.91978 0.93549 0.93725 0.78345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16
2 C 0.06 1.84 5.46 -17.82 -0.10 1.75 16
3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16
4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
7 C -0.55 -15.54 7.71 -34.44 -0.27 -15.81 16
8 H 0.06 1.64 5.87 -52.49 -0.31 1.33 16
9 C 0.19 5.08 5.12 -4.98 -0.03 5.06 16
10 N -0.52 -11.56 3.08 -235.95 -0.73 -12.29 16
11 C 0.08 1.57 4.43 -3.76 -0.02 1.55 16
12 C -0.16 -2.43 3.12 -90.17 -0.28 -2.72 16
13 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
14 C 0.08 1.19 6.27 37.28 0.23 1.43 16
15 O -0.34 -5.89 9.03 -35.23 -0.32 -6.21 16
16 C 0.08 1.21 6.26 37.28 0.23 1.45 16
17 C -0.12 -1.97 3.13 -90.18 -0.28 -2.25 16
18 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
19 C 0.08 1.65 4.35 -3.77 -0.02 1.64 16
20 C 0.11 1.68 3.15 -26.27 -0.08 1.60 16
21 O -0.56 -8.78 11.94 -35.23 -0.42 -9.20 16
22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
23 H 0.02 0.71 8.09 -51.93 -0.42 0.29 16
24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16
25 H 0.04 0.91 6.37 -51.93 -0.33 0.57 16
26 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16
27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
31 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16
32 H 0.05 1.10 6.24 -51.93 -0.32 0.77 16
33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.37 4.17 9.10 45.56 0.41 4.58 16
LS Contribution 262.52 15.07 3.96 3.96
Total: -1.00 -31.93 262.52 -6.72 -38.65
By element:
Atomic # 1 Polarization: 4.83 SS G_CDS: -4.33 Total: 0.50 kcal
Atomic # 6 Polarization: -5.70 SS G_CDS: -0.60 Total: -6.30 kcal
Atomic # 7 Polarization: -38.52 SS G_CDS: 0.01 Total: -38.51 kcal
Atomic # 8 Polarization: -14.67 SS G_CDS: -0.74 Total: -15.40 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -31.93 -6.72 -38.65 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260941789.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.070 kcal
(2) G-P(sol) polarization free energy of solvation -31.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.001 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds