Wall clock time and date at job start Mon Mar 30 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48500 * 109.46993 * 240.00467 * 3 2 1 5 5 H 1.48497 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47192 * 120.00181 * 3 2 1 7 7 C 1.37881 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99891 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.46958 * 184.99490 * 9 7 2 11 11 C 1.46835 * 110.99910 * 295.07666 * 10 9 7 12 12 C 1.53190 * 109.47695 * 185.44654 * 11 10 9 13 13 H 1.08999 * 109.93758 * 179.54219 * 12 11 10 14 14 C 1.53232 * 109.04849 * 58.35995 * 12 11 10 15 15 O 1.42893 * 109.34690 * 299.97944 * 14 12 11 16 16 C 1.42894 * 114.28865 * 299.33647 * 15 14 12 17 17 C 1.53228 * 109.36832 * 60.64998 * 16 15 14 18 18 H 1.09005 * 110.40788 * 180.95641 * 17 16 15 19 19 C 1.46831 * 111.00349 * 59.54429 * 10 9 7 20 20 C 1.53442 * 108.70075 * 301.62875 * 17 16 15 21 21 O 1.42901 * 109.72231 * 178.56799 * 20 17 16 22 22 H 0.96992 * 120.00047 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46885 * 64.99488 * 9 7 2 24 24 H 1.08998 * 109.46767 * 304.99311 * 9 7 2 25 25 H 1.08998 * 109.46896 * 65.44702 * 11 10 9 26 26 H 1.08997 * 109.46988 * 305.44724 * 11 10 9 27 27 H 1.09005 * 109.49193 * 59.93861 * 14 12 11 28 28 H 1.08995 * 109.49468 * 179.97438 * 14 12 11 29 29 H 1.08996 * 109.48465 * 300.67868 * 16 15 14 30 30 H 1.09004 * 109.48496 * 180.61680 * 16 15 14 31 31 H 1.09002 * 109.47163 * 54.54213 * 19 10 9 32 32 H 1.09005 * 109.47525 * 294.53638 * 19 10 9 33 33 H 1.08999 * 109.72479 * 299.18876 * 20 17 16 34 34 H 0.96702 * 113.99579 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2012 -3.6130 0.1194 11 6 3.0756 -3.6879 -1.0578 12 6 3.9574 -4.9368 -0.9605 13 1 4.6042 -5.0041 -1.8352 14 6 3.0608 -6.1755 -0.8623 15 8 2.2386 -6.0737 0.3020 16 6 2.9654 -5.9984 1.5300 17 6 3.8591 -4.7538 1.5161 18 1 4.4347 -4.6889 2.4395 19 6 2.9803 -3.5090 1.3596 20 6 4.8076 -4.8427 0.3133 21 8 5.6298 -3.6750 0.2602 22 1 -0.4850 0.8400 0.0004 23 1 0.6929 -2.5964 -0.9317 24 1 0.5594 -2.5193 0.8416 25 1 3.7066 -2.8000 -1.0987 26 1 2.4665 -3.7426 -1.9599 27 1 2.4296 -6.2389 -1.7487 28 1 3.6812 -7.0690 -0.7932 29 1 3.5838 -6.8890 1.6416 30 1 2.2657 -5.9344 2.3633 31 1 2.3020 -3.4338 2.2096 32 1 3.6116 -2.6213 1.3189 33 1 5.4343 -5.7299 0.4037 34 1 6.2537 -3.6666 -0.4785 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260941789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:56 Heat of formation + Delta-G solvation = -107.885000 kcal Electronic energy + Delta-G solvation = -17227.247606 eV Core-core repulsion = 14545.167060 eV Total energy + Delta-G solvation = -2682.080546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54245 -37.58799 -37.15515 -34.66768 -33.53584 -32.67910 -28.67635 -27.39719 -25.70562 -25.27395 -23.12758 -22.59922 -19.62440 -18.61148 -17.81632 -17.30815 -16.74318 -16.60356 -16.05667 -15.73667 -15.37097 -15.05485 -14.60519 -14.43674 -13.69530 -13.57797 -13.43526 -12.93118 -12.84625 -12.59701 -12.43857 -12.16717 -11.92798 -11.78675 -11.74291 -11.46261 -10.96330 -10.62156 -10.55789 -10.27646 -8.77220 -8.10986 -6.35789 1.32694 1.35023 1.43491 2.35364 3.07227 3.10578 3.33846 3.54515 3.73841 3.88189 4.02773 4.09181 4.24510 4.47780 4.66947 4.68361 4.75550 4.78752 4.81127 4.88666 5.01098 5.11088 5.14395 5.24262 5.28217 5.31957 5.33900 5.74265 6.07929 6.32872 6.62437 6.68438 6.87918 6.93207 7.35621 8.86238 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036966 B = 0.009125 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.267803 B = 3067.694319 C = 3343.401631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.202 3.798 10 N -0.513 5.513 11 C 0.078 3.922 12 C -0.151 4.151 13 H 0.109 0.891 14 C 0.078 3.922 15 O -0.376 6.376 16 C 0.082 3.918 17 C -0.119 4.119 18 H 0.095 0.905 19 C 0.082 3.918 20 C 0.113 3.887 21 O -0.581 6.581 22 H 0.265 0.735 23 H -0.002 1.002 24 H 0.000 1.000 25 H 0.013 0.987 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.012 0.988 33 H 0.088 0.912 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.420 -13.052 -0.381 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.594 4.594 8 H 0.069 0.931 9 C 0.075 3.925 10 N -0.236 5.236 11 C -0.051 4.051 12 C -0.170 4.170 13 H 0.127 0.873 14 C 0.001 3.999 15 O -0.294 6.294 16 C 0.005 3.995 17 C -0.138 4.138 18 H 0.113 0.887 19 C -0.046 4.046 20 C 0.055 3.945 21 O -0.388 6.388 22 H 0.074 0.926 23 H 0.016 0.984 24 H 0.018 0.982 25 H 0.031 0.969 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.106 0.894 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 10.436 -13.227 0.160 16.849 hybrid contribution 0.925 2.127 -0.543 2.382 sum 11.361 -11.101 -0.383 15.889 Atomic orbital electron populations 1.70065 1.07533 1.27880 1.51179 1.25845 0.95654 1.02853 0.94588 0.85619 0.78428 0.78847 0.78843 1.19468 1.20319 1.19824 1.21968 0.93147 0.93180 1.51061 0.93058 1.19345 0.91457 0.87049 0.94620 1.62325 1.17152 1.42617 1.01550 1.21744 0.94078 0.96066 0.93217 1.22768 0.98009 0.96360 0.99905 0.87325 1.22487 0.93515 0.94750 0.89101 1.88021 1.33441 1.93829 1.14089 1.22474 0.94819 0.94556 0.87663 1.22130 0.96103 0.96608 0.98966 0.88653 1.21664 0.94503 0.95903 0.92580 1.21954 0.90463 0.88181 0.93916 1.86565 1.54208 1.43740 1.54318 0.92600 0.98419 0.98197 0.96853 0.93312 0.89353 0.90825 0.90721 0.89197 0.93802 0.97012 0.89436 0.76128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.96 46.09 29.54 68.60 2.03 48.11 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.55 -32.80 7.71 25.60 0.20 -32.60 16 8 H 0.05 3.05 5.87 -2.91 -0.02 3.03 16 9 C 0.20 11.49 5.12 85.56 0.44 11.93 16 10 N -0.51 -23.59 3.08 -900.41 -2.78 -26.36 16 11 C 0.08 3.12 4.43 86.38 0.38 3.50 16 12 C -0.15 -4.15 3.12 -10.50 -0.03 -4.18 16 13 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 14 C 0.08 2.00 6.27 72.06 0.45 2.45 16 15 O -0.38 -12.19 9.03 -148.98 -1.35 -13.54 16 16 C 0.08 2.20 6.26 72.06 0.45 2.65 16 17 C -0.12 -3.63 3.13 -10.51 -0.03 -3.66 16 18 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 19 C 0.08 3.51 4.35 86.38 0.38 3.88 16 20 C 0.11 2.97 3.15 30.89 0.10 3.07 16 21 O -0.58 -16.94 11.94 -148.98 -1.78 -18.72 16 22 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 23 H 0.00 -0.14 8.09 -2.39 -0.02 -0.16 16 24 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.01 0.60 6.37 -2.39 -0.02 0.59 16 26 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 27 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.04 1.96 8.13 -2.39 -0.02 1.94 16 32 H 0.01 0.57 6.24 -2.38 -0.01 0.56 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.39 7.62 9.10 -74.06 -0.67 6.94 16 Total: -1.00 -72.08 262.52 -0.38 -72.46 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.42 Total: 7.30 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 2.79 Total: -11.92 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.49 Total: -83.69 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -3.12 Total: -32.26 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -72.08 -0.38 -72.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260941789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.428 kcal (2) G-P(sol) polarization free energy of solvation -72.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds