Wall clock time and date at job start Mon Mar 30 2020 03:14:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86804 * 119.99914 * 2 1
4 4 H 1.48500 * 109.46993 * 240.00467 * 3 2 1
5 5 H 1.48497 * 109.47019 * 0.02562 * 3 2 1
6 6 H 1.48491 * 109.47192 * 120.00181 * 3 2 1
7 7 C 1.37881 * 120.00220 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99965 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99891 * 359.97438 * 7 2 1
10 10 N 1.46895 * 109.46958 * 184.99490 * 9 7 2
11 11 C 1.46835 * 110.99910 * 295.07666 * 10 9 7
12 12 C 1.53190 * 109.47695 * 185.44654 * 11 10 9
13 13 H 1.08999 * 109.93758 * 179.54219 * 12 11 10
14 14 C 1.53232 * 109.04849 * 58.35995 * 12 11 10
15 15 O 1.42893 * 109.34690 * 299.97944 * 14 12 11
16 16 C 1.42894 * 114.28865 * 299.33647 * 15 14 12
17 17 C 1.53228 * 109.36832 * 60.64998 * 16 15 14
18 18 H 1.09005 * 110.40788 * 180.95641 * 17 16 15
19 19 C 1.46831 * 111.00349 * 59.54429 * 10 9 7
20 20 C 1.53442 * 108.70075 * 301.62875 * 17 16 15
21 21 O 1.42901 * 109.72231 * 178.56799 * 20 17 16
22 22 H 0.96992 * 120.00047 * 359.97438 * 1 2 3
23 23 H 1.09001 * 109.46885 * 64.99488 * 9 7 2
24 24 H 1.08998 * 109.46767 * 304.99311 * 9 7 2
25 25 H 1.08998 * 109.46896 * 65.44702 * 11 10 9
26 26 H 1.08997 * 109.46988 * 305.44724 * 11 10 9
27 27 H 1.09005 * 109.49193 * 59.93861 * 14 12 11
28 28 H 1.08995 * 109.49468 * 179.97438 * 14 12 11
29 29 H 1.08996 * 109.48465 * 300.67868 * 16 15 14
30 30 H 1.09004 * 109.48496 * 180.61680 * 16 15 14
31 31 H 1.09002 * 109.47163 * 54.54213 * 19 10 9
32 32 H 1.09005 * 109.47525 * 294.53638 * 19 10 9
33 33 H 1.08999 * 109.72479 * 299.18876 * 20 17 16
34 34 H 0.96702 * 113.99579 * 180.02562 * 21 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2126
5 1 1.2841 2.7465 0.0006
6 1 3.1028 1.6965 1.2124
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 7 2.2012 -3.6130 0.1194
11 6 3.0756 -3.6879 -1.0578
12 6 3.9574 -4.9368 -0.9605
13 1 4.6042 -5.0041 -1.8352
14 6 3.0608 -6.1755 -0.8623
15 8 2.2386 -6.0737 0.3020
16 6 2.9654 -5.9984 1.5300
17 6 3.8591 -4.7538 1.5161
18 1 4.4347 -4.6889 2.4395
19 6 2.9803 -3.5090 1.3596
20 6 4.8076 -4.8427 0.3133
21 8 5.6298 -3.6750 0.2602
22 1 -0.4850 0.8400 0.0004
23 1 0.6929 -2.5964 -0.9317
24 1 0.5594 -2.5193 0.8416
25 1 3.7066 -2.8000 -1.0987
26 1 2.4665 -3.7426 -1.9599
27 1 2.4296 -6.2389 -1.7487
28 1 3.6812 -7.0690 -0.7932
29 1 3.5838 -6.8890 1.6416
30 1 2.2657 -5.9344 2.3633
31 1 2.3020 -3.4338 2.2096
32 1 3.6116 -2.6213 1.3189
33 1 5.4343 -5.7299 0.4037
34 1 6.2537 -3.6666 -0.4785
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260941789.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:56
Heat of formation + Delta-G solvation = -107.885000 kcal
Electronic energy + Delta-G solvation = -17227.247606 eV
Core-core repulsion = 14545.167060 eV
Total energy + Delta-G solvation = -2682.080546 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.54245 -37.58799 -37.15515 -34.66768 -33.53584 -32.67910 -28.67635 -27.39719
-25.70562 -25.27395 -23.12758 -22.59922 -19.62440 -18.61148 -17.81632 -17.30815
-16.74318 -16.60356 -16.05667 -15.73667 -15.37097 -15.05485 -14.60519 -14.43674
-13.69530 -13.57797 -13.43526 -12.93118 -12.84625 -12.59701 -12.43857 -12.16717
-11.92798 -11.78675 -11.74291 -11.46261 -10.96330 -10.62156 -10.55789 -10.27646
-8.77220 -8.10986 -6.35789 1.32694 1.35023 1.43491 2.35364 3.07227
3.10578 3.33846 3.54515 3.73841 3.88189 4.02773 4.09181 4.24510
4.47780 4.66947 4.68361 4.75550 4.78752 4.81127 4.88666 5.01098
5.11088 5.14395 5.24262 5.28217 5.31957 5.33900 5.74265 6.07929
6.32872 6.62437 6.68438 6.87918 6.93207 7.35621 8.86238
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.036966 B = 0.009125 C = 0.008373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 757.267803 B = 3067.694319 C = 3343.401631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C 0.010 3.990
3 Si 0.958 3.042
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.273 1.273
7 C -0.555 4.555
8 H 0.051 0.949
9 C 0.202 3.798
10 N -0.513 5.513
11 C 0.078 3.922
12 C -0.151 4.151
13 H 0.109 0.891
14 C 0.078 3.922
15 O -0.376 6.376
16 C 0.082 3.918
17 C -0.119 4.119
18 H 0.095 0.905
19 C 0.082 3.918
20 C 0.113 3.887
21 O -0.581 6.581
22 H 0.265 0.735
23 H -0.002 1.002
24 H 0.000 1.000
25 H 0.013 0.987
26 H 0.048 0.952
27 H 0.088 0.912
28 H 0.074 0.926
29 H 0.075 0.925
30 H 0.090 0.910
31 H 0.043 0.957
32 H 0.012 0.988
33 H 0.088 0.912
34 H 0.390 0.610
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.420 -13.052 -0.381 17.346
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.189 4.189
3 Si 0.783 3.217
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.198 1.198
7 C -0.594 4.594
8 H 0.069 0.931
9 C 0.075 3.925
10 N -0.236 5.236
11 C -0.051 4.051
12 C -0.170 4.170
13 H 0.127 0.873
14 C 0.001 3.999
15 O -0.294 6.294
16 C 0.005 3.995
17 C -0.138 4.138
18 H 0.113 0.887
19 C -0.046 4.046
20 C 0.055 3.945
21 O -0.388 6.388
22 H 0.074 0.926
23 H 0.016 0.984
24 H 0.018 0.982
25 H 0.031 0.969
26 H 0.067 0.933
27 H 0.106 0.894
28 H 0.092 0.908
29 H 0.093 0.907
30 H 0.108 0.892
31 H 0.062 0.938
32 H 0.030 0.970
33 H 0.106 0.894
34 H 0.239 0.761
Dipole moment (debyes) X Y Z Total
from point charges 10.436 -13.227 0.160 16.849
hybrid contribution 0.925 2.127 -0.543 2.382
sum 11.361 -11.101 -0.383 15.889
Atomic orbital electron populations
1.70065 1.07533 1.27880 1.51179 1.25845 0.95654 1.02853 0.94588
0.85619 0.78428 0.78847 0.78843 1.19468 1.20319 1.19824 1.21968
0.93147 0.93180 1.51061 0.93058 1.19345 0.91457 0.87049 0.94620
1.62325 1.17152 1.42617 1.01550 1.21744 0.94078 0.96066 0.93217
1.22768 0.98009 0.96360 0.99905 0.87325 1.22487 0.93515 0.94750
0.89101 1.88021 1.33441 1.93829 1.14089 1.22474 0.94819 0.94556
0.87663 1.22130 0.96103 0.96608 0.98966 0.88653 1.21664 0.94503
0.95903 0.92580 1.21954 0.90463 0.88181 0.93916 1.86565 1.54208
1.43740 1.54318 0.92600 0.98419 0.98197 0.96853 0.93312 0.89353
0.90825 0.90721 0.89197 0.93802 0.97012 0.89436 0.76128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16
2 C 0.01 0.58 5.46 84.66 0.46 1.04 16
3 Si 0.96 46.09 29.54 68.60 2.03 48.11 16
4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16
5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
6 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16
7 C -0.55 -32.80 7.71 25.60 0.20 -32.60 16
8 H 0.05 3.05 5.87 -2.91 -0.02 3.03 16
9 C 0.20 11.49 5.12 85.56 0.44 11.93 16
10 N -0.51 -23.59 3.08 -900.41 -2.78 -26.36 16
11 C 0.08 3.12 4.43 86.38 0.38 3.50 16
12 C -0.15 -4.15 3.12 -10.50 -0.03 -4.18 16
13 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16
14 C 0.08 2.00 6.27 72.06 0.45 2.45 16
15 O -0.38 -12.19 9.03 -148.98 -1.35 -13.54 16
16 C 0.08 2.20 6.26 72.06 0.45 2.65 16
17 C -0.12 -3.63 3.13 -10.51 -0.03 -3.66 16
18 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16
19 C 0.08 3.51 4.35 86.38 0.38 3.88 16
20 C 0.11 2.97 3.15 30.89 0.10 3.07 16
21 O -0.58 -16.94 11.94 -148.98 -1.78 -18.72 16
22 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16
23 H 0.00 -0.14 8.09 -2.39 -0.02 -0.16 16
24 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16
25 H 0.01 0.60 6.37 -2.39 -0.02 0.59 16
26 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16
27 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16
28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
30 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16
31 H 0.04 1.96 8.13 -2.39 -0.02 1.94 16
32 H 0.01 0.57 6.24 -2.38 -0.01 0.56 16
33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
34 H 0.39 7.62 9.10 -74.06 -0.67 6.94 16
Total: -1.00 -72.08 262.52 -0.38 -72.46
By element:
Atomic # 1 Polarization: 6.89 SS G_CDS: 0.42 Total: 7.30 kcal
Atomic # 6 Polarization: -14.71 SS G_CDS: 2.79 Total: -11.92 kcal
Atomic # 7 Polarization: -81.20 SS G_CDS: -2.49 Total: -83.69 kcal
Atomic # 8 Polarization: -29.14 SS G_CDS: -3.12 Total: -32.26 kcal
Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal
Total: -72.08 -0.38 -72.46 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260941789.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.428 kcal
(2) G-P(sol) polarization free energy of solvation -72.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.503 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds