Wall clock time and date at job start Mon Mar 30 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99988 * 2 1 4 4 H 1.48494 * 109.47421 * 240.00131 * 3 2 1 5 5 H 1.48499 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46979 * 120.00128 * 3 2 1 7 7 C 1.37874 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47023 * 184.65989 * 9 7 2 11 11 H 1.09003 * 109.53811 * 303.57891 * 10 9 7 12 12 C 1.53096 * 109.50881 * 63.68829 * 10 9 7 13 13 O 1.43017 * 109.25990 * 176.78242 * 12 10 9 14 14 C 1.43015 * 113.73992 * 301.33424 * 13 12 10 15 15 C 1.53094 * 109.25965 * 58.66458 * 14 13 12 16 16 N 1.47011 * 109.26224 * 303.15577 * 15 14 13 17 17 C 1.46903 * 111.00517 * 182.39267 * 16 15 14 18 18 C 1.54026 * 113.81845 * 143.92882 * 17 16 15 19 19 O 1.44448 * 85.42575 * 223.23797 * 18 17 16 20 20 C 1.44177 * 93.37829 * 24.08555 * 19 18 17 21 21 H 0.96995 * 120.00304 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46981 * 64.66071 * 9 7 2 23 23 H 1.08994 * 109.46961 * 304.65561 * 9 7 2 24 24 H 1.08996 * 109.50669 * 296.71552 * 12 10 9 25 25 H 1.09000 * 109.50751 * 56.80750 * 12 10 9 26 26 H 1.08997 * 109.50946 * 178.60511 * 14 13 12 27 27 H 1.09007 * 109.50192 * 298.73376 * 14 13 12 28 28 H 1.09005 * 109.50591 * 63.09124 * 15 14 13 29 29 H 1.09003 * 109.50855 * 183.17611 * 15 14 13 30 30 H 1.09001 * 112.99464 * 275.75292 * 17 16 15 31 31 H 1.08998 * 113.86900 * 337.34313 * 18 17 16 32 32 H 1.08998 * 113.86931 * 109.04997 * 18 17 16 33 33 H 1.08994 * 113.86655 * 221.76745 * 20 19 18 34 34 H 1.09001 * 113.86184 * 90.06620 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2411 -3.6598 0.1151 11 1 2.9689 -3.6010 -0.6943 12 6 2.9660 -3.5799 1.4612 13 8 3.8348 -4.7079 1.5968 14 6 3.1603 -5.9667 1.5198 15 6 2.4374 -6.0707 0.1743 16 7 1.5148 -4.9352 0.0304 17 6 0.7578 -5.0276 -1.2252 18 6 -0.6952 -4.5287 -1.1137 19 8 -1.0340 -5.6977 -1.8917 20 6 0.1459 -6.4176 -1.4817 21 1 -0.4850 0.8400 0.0004 22 1 0.6888 -2.5933 -0.9308 23 1 0.5630 -2.5222 0.8433 24 1 3.5520 -2.6619 1.5051 25 1 2.2346 -3.5839 2.2693 26 1 3.8867 -6.7747 1.6061 27 1 2.4344 -6.0408 2.3296 28 1 3.1683 -6.0505 -0.6342 29 1 1.8758 -7.0041 0.1340 30 1 1.2987 -4.6203 -2.0794 31 1 -1.0904 -4.5452 -0.0981 32 1 -0.8786 -3.5860 -1.6291 33 1 0.6281 -6.9698 -2.2883 34 1 0.0080 -7.0123 -0.5786 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:12 Heat of formation + Delta-G solvation = -52.888620 kcal Electronic energy + Delta-G solvation = -16697.254903 eV Core-core repulsion = 14017.559179 eV Total energy + Delta-G solvation = -2679.695724 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33460 -38.58058 -35.05310 -33.38274 -31.36778 -29.04829 -27.33622 -26.35642 -25.00084 -23.86992 -21.54636 -19.99730 -19.42457 -16.80628 -16.46553 -16.04407 -15.70840 -15.26792 -14.72104 -14.55403 -14.13998 -14.07210 -13.63966 -12.72195 -12.52152 -12.18645 -11.96239 -11.40917 -11.18336 -11.02338 -10.93049 -10.69090 -10.48277 -10.33558 -10.09657 -9.59479 -9.36509 -9.27081 -8.90997 -8.41114 -7.96554 -6.08099 -4.11157 3.29370 3.34440 3.36539 3.99337 4.13743 4.32298 4.43540 4.57914 5.19672 5.27168 5.27747 5.35951 5.42728 5.50937 5.68760 5.72288 5.85697 5.90333 5.98268 6.04671 6.21249 6.32262 6.37713 6.48599 6.62565 6.73292 7.30886 7.36527 7.56206 7.63035 7.72193 7.93652 8.30959 8.94174 9.53362 11.02825 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.009490 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.912274 B = 2949.805288 C = 3906.195558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.032 3.968 10 C 0.055 3.945 11 H 0.038 0.962 12 C 0.078 3.922 13 O -0.397 6.397 14 C 0.066 3.934 15 C 0.015 3.985 16 N -0.527 5.527 17 C 0.021 3.979 18 C 0.058 3.942 19 O -0.391 6.391 20 C 0.038 3.962 21 H 0.262 0.738 22 H 0.021 0.979 23 H 0.029 0.971 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -11.246 0.338 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.053 4.053 11 H 0.056 0.944 12 C 0.002 3.998 13 O -0.315 6.315 14 C -0.011 4.011 15 C -0.113 4.113 16 N -0.254 5.254 17 C -0.087 4.087 18 C -0.019 4.019 19 O -0.309 6.309 20 C -0.039 4.039 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.048 0.952 24 H 0.124 0.876 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.249 -11.187 0.576 11.426 hybrid contribution 0.888 1.043 -0.679 1.529 sum 3.137 -10.144 -0.103 10.618 Atomic orbital electron populations 1.69939 1.05989 1.26898 1.50067 1.24966 0.94828 0.99166 0.95049 0.86663 0.79608 0.83111 0.78686 1.20274 1.21253 1.20141 1.21121 0.92938 0.90773 1.51633 0.92628 1.19170 0.93617 0.89683 0.98044 1.22571 0.96370 0.89461 0.96867 0.94425 1.22781 0.93087 0.87895 0.96053 1.87937 1.35563 1.14333 1.93714 1.22531 0.95956 0.86902 0.95734 1.22744 0.95126 0.95173 0.98252 1.62654 1.26573 1.02913 1.33298 1.24932 0.95931 0.95573 0.92308 1.24253 0.91404 0.89630 0.96610 1.89676 1.44689 1.30056 1.66517 1.24087 0.85509 0.94888 0.99445 0.92807 0.96059 0.95213 0.87568 0.92754 0.89373 0.92759 0.94518 0.90371 0.90497 0.89218 0.88343 0.89930 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.05 8.35 -34.44 -0.29 -14.34 16 8 H 0.06 1.45 7.15 -52.48 -0.38 1.08 16 9 C 0.03 0.78 3.88 -27.88 -0.11 0.67 16 10 C 0.05 1.12 1.97 -67.60 -0.13 0.99 16 11 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 12 C 0.08 1.52 6.03 37.21 0.22 1.75 16 13 O -0.40 -7.13 10.83 -35.23 -0.38 -7.51 16 14 C 0.07 0.95 7.01 37.21 0.26 1.21 16 15 C 0.02 0.22 5.31 -3.71 -0.02 0.20 16 16 N -0.53 -9.21 4.56 -226.29 -1.03 -10.24 16 17 C 0.02 0.36 2.86 -66.64 -0.19 0.17 16 18 C 0.06 1.03 7.47 37.64 0.28 1.31 16 19 O -0.39 -6.77 12.46 -35.23 -0.44 -7.21 16 20 C 0.04 0.54 7.72 37.64 0.29 0.83 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 22 H 0.02 0.54 5.45 -51.93 -0.28 0.26 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.11 2.16 7.07 -51.93 -0.37 1.79 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.93 6.45 -51.93 -0.34 0.59 16 30 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 31 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.10 1.88 7.31 -51.93 -0.38 1.50 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.06 7.27 -51.93 -0.38 0.68 16 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -28.97 270.25 -6.90 -35.87 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.05 Total: -0.54 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.22 Total: -5.61 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.29 Total: -35.09 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.82 Total: -14.72 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.97 -6.90 -35.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.023 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds