Wall clock time and date at job start Mon Mar 30 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99988 * 2 1 4 4 H 1.48494 * 109.47421 * 240.00131 * 3 2 1 5 5 H 1.48499 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46979 * 120.00128 * 3 2 1 7 7 C 1.37874 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47023 * 184.65989 * 9 7 2 11 11 H 1.09003 * 109.53811 * 303.57891 * 10 9 7 12 12 C 1.53096 * 109.50881 * 63.68829 * 10 9 7 13 13 O 1.43017 * 109.25990 * 176.78242 * 12 10 9 14 14 C 1.43015 * 113.73992 * 301.33424 * 13 12 10 15 15 C 1.53094 * 109.25965 * 58.66458 * 14 13 12 16 16 N 1.47011 * 109.26224 * 303.15577 * 15 14 13 17 17 C 1.46903 * 111.00517 * 182.39267 * 16 15 14 18 18 C 1.54026 * 113.81845 * 143.92882 * 17 16 15 19 19 O 1.44448 * 85.42575 * 223.23797 * 18 17 16 20 20 C 1.44177 * 93.37829 * 24.08555 * 19 18 17 21 21 H 0.96995 * 120.00304 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46981 * 64.66071 * 9 7 2 23 23 H 1.08994 * 109.46961 * 304.65561 * 9 7 2 24 24 H 1.08996 * 109.50669 * 296.71552 * 12 10 9 25 25 H 1.09000 * 109.50751 * 56.80750 * 12 10 9 26 26 H 1.08997 * 109.50946 * 178.60511 * 14 13 12 27 27 H 1.09007 * 109.50192 * 298.73376 * 14 13 12 28 28 H 1.09005 * 109.50591 * 63.09124 * 15 14 13 29 29 H 1.09003 * 109.50855 * 183.17611 * 15 14 13 30 30 H 1.09001 * 112.99464 * 275.75292 * 17 16 15 31 31 H 1.08998 * 113.86900 * 337.34313 * 18 17 16 32 32 H 1.08998 * 113.86931 * 109.04997 * 18 17 16 33 33 H 1.08994 * 113.86655 * 221.76745 * 20 19 18 34 34 H 1.09001 * 113.86184 * 90.06620 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2411 -3.6598 0.1151 11 1 2.9689 -3.6010 -0.6943 12 6 2.9660 -3.5799 1.4612 13 8 3.8348 -4.7079 1.5968 14 6 3.1603 -5.9667 1.5198 15 6 2.4374 -6.0707 0.1743 16 7 1.5148 -4.9352 0.0304 17 6 0.7578 -5.0276 -1.2252 18 6 -0.6952 -4.5287 -1.1137 19 8 -1.0340 -5.6977 -1.8917 20 6 0.1459 -6.4176 -1.4817 21 1 -0.4850 0.8400 0.0004 22 1 0.6888 -2.5933 -0.9308 23 1 0.5630 -2.5222 0.8433 24 1 3.5520 -2.6619 1.5051 25 1 2.2346 -3.5839 2.2693 26 1 3.8867 -6.7747 1.6061 27 1 2.4344 -6.0408 2.3296 28 1 3.1683 -6.0505 -0.6342 29 1 1.8758 -7.0041 0.1340 30 1 1.2987 -4.6203 -2.0794 31 1 -1.0904 -4.5452 -0.0981 32 1 -0.8786 -3.5860 -1.6291 33 1 0.6281 -6.9698 -2.2883 34 1 0.0080 -7.0123 -0.5786 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:12 Heat of formation + Delta-G solvation = -74.716895 kcal Electronic energy + Delta-G solvation = -16698.201448 eV Core-core repulsion = 14017.559179 eV Total energy + Delta-G solvation = -2680.642269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69098 -39.96642 -36.55572 -35.22692 -33.09147 -30.39891 -29.04606 -27.66855 -26.50452 -25.59357 -23.06886 -21.43494 -20.87997 -18.66682 -17.91224 -17.45335 -17.12558 -16.65145 -16.52120 -15.98939 -15.63139 -15.49928 -15.04149 -14.15308 -14.10959 -13.86811 -13.53248 -13.13799 -12.88120 -12.57855 -12.41896 -12.31298 -12.09313 -11.83706 -11.65725 -11.23665 -11.17601 -10.79707 -10.59306 -10.32446 -9.38446 -8.19227 -6.28924 1.41403 1.42591 1.50411 2.39867 2.69760 2.79824 3.00873 3.16238 3.26737 3.97421 4.01561 4.09198 4.19145 4.25480 4.35723 4.39119 4.44694 4.61213 4.67089 4.79688 4.83659 4.88085 4.99543 5.05140 5.13606 5.16224 5.45162 5.61740 5.72990 5.97843 6.07498 6.25338 6.28274 6.85315 7.39594 8.91825 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.009490 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.912274 B = 2949.805288 C = 3906.195558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.044 3.956 10 C 0.067 3.933 11 H 0.024 0.976 12 C 0.088 3.912 13 O -0.406 6.406 14 C 0.058 3.942 15 C 0.014 3.986 16 N -0.531 5.531 17 C 0.017 3.983 18 C 0.056 3.944 19 O -0.405 6.405 20 C 0.053 3.947 21 H 0.263 0.737 22 H 0.005 0.995 23 H 0.001 0.999 24 H 0.092 0.908 25 H 0.048 0.952 26 H 0.126 0.874 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -12.857 0.493 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.042 4.042 11 H 0.042 0.958 12 C 0.011 3.989 13 O -0.325 6.325 14 C -0.018 4.018 15 C -0.113 4.113 16 N -0.259 5.259 17 C -0.092 4.092 18 C -0.021 4.021 19 O -0.324 6.324 20 C -0.023 4.023 21 H 0.072 0.928 22 H 0.023 0.977 23 H 0.020 0.980 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.447 -12.826 0.732 13.301 hybrid contribution 0.508 1.444 -0.733 1.697 sum 3.955 -11.381 -0.001 12.049 Atomic orbital electron populations 1.70068 1.07511 1.27722 1.51191 1.25808 0.95632 1.02775 0.94745 0.85632 0.78384 0.78777 0.79070 1.19598 1.21016 1.19167 1.21513 0.93304 0.92012 1.51009 0.92360 1.18937 0.93618 0.90910 0.95850 1.22228 0.95067 0.89884 0.96998 0.95817 1.22485 0.92742 0.88515 0.95121 1.87919 1.35731 1.15155 1.93710 1.22891 0.97127 0.86020 0.95792 1.22919 0.95041 0.95017 0.98331 1.62590 1.27029 1.02591 1.33643 1.24941 0.94857 0.97824 0.91606 1.24081 0.92788 0.89185 0.96032 1.89658 1.46139 1.30015 1.66596 1.24302 0.83311 0.93316 1.01356 0.92815 0.97723 0.98031 0.88995 0.93358 0.85649 0.92245 0.94393 0.86838 0.91816 0.89657 0.90792 0.86921 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.55 13.29 21.45 0.28 -54.26 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -29.48 8.35 25.60 0.21 -29.26 16 8 H 0.06 3.08 7.15 -2.91 -0.02 3.06 16 9 C 0.04 2.23 3.88 29.85 0.12 2.34 16 10 C 0.07 2.74 1.97 44.93 0.09 2.83 16 11 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 12 C 0.09 3.44 6.03 72.01 0.43 3.87 16 13 O -0.41 -13.89 10.83 -148.98 -1.61 -15.50 16 14 C 0.06 1.47 7.01 72.01 0.50 1.98 16 15 C 0.01 0.36 5.31 86.31 0.46 0.82 16 16 N -0.53 -17.96 4.56 -880.87 -4.01 -21.98 16 17 C 0.02 0.55 2.86 45.61 0.13 0.68 16 18 C 0.06 2.04 7.47 72.29 0.54 2.58 16 19 O -0.41 -13.60 12.46 -148.98 -1.86 -15.46 16 20 C 0.05 1.35 7.72 72.29 0.56 1.91 16 21 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 22 H 0.00 0.24 5.45 -2.39 -0.01 0.23 16 23 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 24 H 0.09 3.78 7.07 -2.39 -0.02 3.77 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 26 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.11 2.13 6.45 -2.39 -0.02 2.11 16 30 H 0.06 2.27 8.06 -2.39 -0.02 2.25 16 31 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.07 3.01 7.31 -2.39 -0.02 2.99 16 33 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.22 7.27 -2.39 -0.02 2.20 16 Total: -1.00 -63.09 270.25 -0.59 -63.68 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.07 Total: 9.31 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 3.51 Total: -11.28 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -3.73 Total: -76.24 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -3.47 Total: -30.96 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -63.09 -0.59 -63.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.038 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds