Wall clock time and date at job start Mon Mar 30 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99702 * 2 1 4 4 H 1.48493 * 109.47279 * 269.99722 * 3 2 1 5 5 H 1.48501 * 109.47224 * 30.00211 * 3 2 1 6 6 H 1.48508 * 109.46810 * 149.99855 * 3 2 1 7 7 C 1.37874 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00368 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99922 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.50777 * 59.90998 * 9 7 2 11 11 C 1.53105 * 109.50012 * 299.77943 * 9 7 2 12 12 O 1.43018 * 109.25349 * 183.22016 * 11 9 7 13 13 C 1.43011 * 113.73974 * 58.66784 * 12 11 9 14 14 C 1.53096 * 109.26273 * 301.32840 * 13 12 11 15 15 N 1.47009 * 109.50426 * 180.02562 * 9 7 2 16 16 C 1.46898 * 110.99980 * 302.32064 * 15 9 7 17 17 C 1.52999 * 109.47220 * 170.00799 * 16 15 9 18 18 C 1.54036 * 113.81671 * 185.00146 * 17 16 15 19 19 O 1.44178 * 85.51721 * 223.19024 * 18 17 16 20 20 C 1.44178 * 93.33758 * 24.19298 * 19 18 17 21 21 H 0.97001 * 119.99919 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.50523 * 303.15110 * 11 9 7 23 23 H 1.08993 * 109.50492 * 63.28291 * 11 9 7 24 24 H 1.09003 * 109.50512 * 61.26659 * 13 12 11 25 25 H 1.09004 * 109.50360 * 181.35164 * 13 12 11 26 26 H 1.08998 * 109.50891 * 296.91437 * 14 13 12 27 27 H 1.08991 * 109.50772 * 176.78384 * 14 13 12 28 28 H 1.08997 * 109.47264 * 49.99951 * 16 15 9 29 29 H 1.09006 * 109.47370 * 290.00599 * 16 15 9 30 30 H 1.09002 * 113.08056 * 316.90039 * 17 16 15 31 31 H 1.09006 * 113.86377 * 337.33799 * 18 17 16 32 32 H 1.08997 * 113.86599 * 109.04500 * 18 17 16 33 33 H 1.08997 * 113.86183 * 221.65572 * 20 19 18 34 34 H 1.09004 * 113.98216 * 89.96736 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6788 0.8901 11 6 4.0232 -0.4775 -1.2515 12 8 5.4513 -0.5461 -1.2839 13 6 5.9638 -1.8812 -1.2848 14 6 5.4719 -2.6119 -0.0327 15 7 4.0024 -2.5798 0.0010 16 6 3.4866 -3.3211 1.1596 17 6 3.8077 -4.8082 0.9977 18 6 3.2044 -5.6985 2.1005 19 8 4.4842 -6.3624 2.1073 20 6 5.1766 -5.2154 1.5746 21 1 -0.4850 0.8401 -0.0004 22 1 3.6154 -0.9608 -2.1393 23 1 3.7092 0.5659 -1.2276 24 1 5.6124 -2.4052 -2.1737 25 1 7.0535 -1.8528 -1.2860 26 1 5.8675 -2.1191 0.8554 27 1 5.8128 -3.6468 -0.0577 28 1 2.4068 -3.1874 1.2250 29 1 3.9549 -2.9452 2.0693 30 1 3.6285 -5.1766 -0.0124 31 1 2.9794 -5.1650 3.0241 32 1 2.3828 -6.3280 1.7588 33 1 5.9193 -5.4619 0.8159 34 1 5.5548 -4.5332 2.3360 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:18 Heat of formation + Delta-G solvation = -39.773252 kcal Electronic energy + Delta-G solvation = -16721.687862 eV Core-core repulsion = 14042.560863 eV Total energy + Delta-G solvation = -2679.126999 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29335 -38.74680 -35.25894 -33.06731 -30.72669 -30.44379 -27.09549 -26.44952 -25.21407 -23.04320 -22.22898 -19.84988 -19.37875 -17.16348 -16.51166 -15.97515 -15.69929 -15.38773 -15.16245 -14.44163 -14.09738 -13.84443 -13.35963 -13.25980 -12.68188 -12.62321 -12.12836 -11.53980 -11.48988 -11.17444 -10.79442 -10.56135 -10.47951 -10.38463 -9.93602 -9.71839 -9.43607 -9.36562 -8.93727 -8.58136 -7.56358 -6.21615 -4.22375 3.16824 3.28879 3.31772 3.84965 4.24920 4.33512 4.49752 4.69438 5.08274 5.12730 5.33328 5.42768 5.45755 5.58514 5.58960 5.65473 5.74117 5.93989 6.02201 6.11888 6.17295 6.23135 6.25041 6.31797 6.39718 6.47655 6.70059 6.97620 7.25340 7.72481 7.80136 7.87557 8.48472 8.83601 9.38331 10.90332 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028660 B = 0.009663 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.750915 B = 2896.840742 C = 3677.284225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.087 0.913 9 C 0.157 3.843 10 H 0.008 0.992 11 C 0.058 3.942 12 O -0.402 6.402 13 C 0.067 3.933 14 C 0.012 3.988 15 N -0.521 5.521 16 C 0.063 3.937 17 C -0.146 4.146 18 C 0.039 3.961 19 O -0.390 6.390 20 C 0.034 3.966 21 H 0.267 0.733 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.026 0.974 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.161 -6.287 1.246 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.105 0.895 9 C 0.049 3.951 10 H 0.025 0.975 11 C -0.018 4.018 12 O -0.321 6.321 13 C -0.010 4.010 14 C -0.117 4.117 15 N -0.246 5.246 16 C -0.065 4.065 17 C -0.164 4.164 18 C -0.038 4.038 19 O -0.308 6.308 20 C -0.043 4.043 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.010 -6.487 0.893 11.138 hybrid contribution 0.445 1.355 0.638 1.562 sum 9.455 -5.132 1.532 10.866 Atomic orbital electron populations 1.69858 1.06044 1.27180 1.49758 1.24918 0.94784 0.98725 0.94441 0.87106 0.80224 0.84104 0.78557 1.20034 1.21713 1.18782 1.20870 0.87507 0.94968 1.51602 0.89519 1.20288 0.96940 0.84578 0.93264 0.97492 1.23379 0.78174 1.00300 0.99924 1.87869 1.22936 1.26112 1.95165 1.22510 0.97727 0.83885 0.96886 1.22853 0.90722 1.00180 0.97934 1.62141 1.05376 1.15910 1.41127 1.22123 1.03011 0.90437 0.90901 1.24373 0.94356 0.96914 1.00796 1.23981 0.87883 0.93761 0.98187 1.89618 1.20801 1.32909 1.87517 1.24160 0.96247 0.87139 0.96765 0.92316 0.92232 0.90458 0.92872 0.89717 0.95076 0.90666 0.87990 0.95592 0.87336 0.90167 0.89155 0.89578 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 2 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 3 Si 0.87 21.12 24.35 -169.99 -4.14 16.98 16 4 H -0.27 -6.47 6.90 56.52 0.39 -6.08 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 7 C -0.51 -13.66 8.38 -34.44 -0.29 -13.95 16 8 H 0.09 2.49 6.82 -52.49 -0.36 2.13 16 9 C 0.16 3.68 1.56 -68.75 -0.11 3.57 16 10 H 0.01 0.19 7.19 -51.93 -0.37 -0.19 16 11 C 0.06 1.32 5.74 37.21 0.21 1.53 16 12 O -0.40 -8.33 10.83 -35.23 -0.38 -8.71 16 13 C 0.07 1.11 7.01 37.21 0.26 1.37 16 14 C 0.01 0.20 5.18 -3.71 -0.02 0.18 16 15 N -0.52 -10.34 4.53 -227.73 -1.03 -11.37 16 16 C 0.06 1.13 4.68 -3.83 -0.02 1.12 16 17 C -0.15 -2.14 3.66 -89.54 -0.33 -2.46 16 18 C 0.04 0.53 8.79 37.61 0.33 0.86 16 19 O -0.39 -5.85 12.45 -35.23 -0.44 -6.29 16 20 C 0.03 0.44 7.06 37.60 0.27 0.71 16 21 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 23 H 0.08 1.82 3.39 -51.93 -0.18 1.65 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.04 5.42 -51.93 -0.28 0.76 16 28 H 0.10 2.07 6.05 -51.93 -0.31 1.76 16 29 H 0.03 0.46 7.81 -51.93 -0.41 0.05 16 30 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.01 7.49 -51.93 -0.39 0.62 16 34 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 LS Contribution 261.47 15.07 3.94 3.94 Total: -1.00 -29.57 261.47 -5.91 -35.47 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.84 Total: 0.37 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 0.21 Total: -5.11 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.26 Total: -36.65 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.82 Total: -15.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.14 Total: 16.98 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.57 -5.91 -35.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.300 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds