Wall clock time and date at job start Mon Mar 30 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99702 * 2 1 4 4 H 1.48493 * 109.47279 * 269.99722 * 3 2 1 5 5 H 1.48501 * 109.47224 * 30.00211 * 3 2 1 6 6 H 1.48508 * 109.46810 * 149.99855 * 3 2 1 7 7 C 1.37874 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00368 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99922 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.50777 * 59.90998 * 9 7 2 11 11 C 1.53105 * 109.50012 * 299.77943 * 9 7 2 12 12 O 1.43018 * 109.25349 * 183.22016 * 11 9 7 13 13 C 1.43011 * 113.73974 * 58.66784 * 12 11 9 14 14 C 1.53096 * 109.26273 * 301.32840 * 13 12 11 15 15 N 1.47009 * 109.50426 * 180.02562 * 9 7 2 16 16 C 1.46898 * 110.99980 * 302.32064 * 15 9 7 17 17 C 1.52999 * 109.47220 * 170.00799 * 16 15 9 18 18 C 1.54036 * 113.81671 * 185.00146 * 17 16 15 19 19 O 1.44178 * 85.51721 * 223.19024 * 18 17 16 20 20 C 1.44178 * 93.33758 * 24.19298 * 19 18 17 21 21 H 0.97001 * 119.99919 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.50523 * 303.15110 * 11 9 7 23 23 H 1.08993 * 109.50492 * 63.28291 * 11 9 7 24 24 H 1.09003 * 109.50512 * 61.26659 * 13 12 11 25 25 H 1.09004 * 109.50360 * 181.35164 * 13 12 11 26 26 H 1.08998 * 109.50891 * 296.91437 * 14 13 12 27 27 H 1.08991 * 109.50772 * 176.78384 * 14 13 12 28 28 H 1.08997 * 109.47264 * 49.99951 * 16 15 9 29 29 H 1.09006 * 109.47370 * 290.00599 * 16 15 9 30 30 H 1.09002 * 113.08056 * 316.90039 * 17 16 15 31 31 H 1.09006 * 113.86377 * 337.33799 * 18 17 16 32 32 H 1.08997 * 113.86599 * 109.04500 * 18 17 16 33 33 H 1.08997 * 113.86183 * 221.65572 * 20 19 18 34 34 H 1.09004 * 113.98216 * 89.96736 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6788 0.8901 11 6 4.0232 -0.4775 -1.2515 12 8 5.4513 -0.5461 -1.2839 13 6 5.9638 -1.8812 -1.2848 14 6 5.4719 -2.6119 -0.0327 15 7 4.0024 -2.5798 0.0010 16 6 3.4866 -3.3211 1.1596 17 6 3.8077 -4.8082 0.9977 18 6 3.2044 -5.6985 2.1005 19 8 4.4842 -6.3624 2.1073 20 6 5.1766 -5.2154 1.5746 21 1 -0.4850 0.8401 -0.0004 22 1 3.6154 -0.9608 -2.1393 23 1 3.7092 0.5659 -1.2276 24 1 5.6124 -2.4052 -2.1737 25 1 7.0535 -1.8528 -1.2860 26 1 5.8675 -2.1191 0.8554 27 1 5.8128 -3.6468 -0.0577 28 1 2.4068 -3.1874 1.2250 29 1 3.9549 -2.9452 2.0693 30 1 3.6285 -5.1766 -0.0124 31 1 2.9794 -5.1650 3.0241 32 1 2.3828 -6.3280 1.7588 33 1 5.9193 -5.4619 0.8159 34 1 5.5548 -4.5332 2.3360 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:17 Heat of formation + Delta-G solvation = -63.400416 kcal Electronic energy + Delta-G solvation = -16722.712412 eV Core-core repulsion = 14042.560863 eV Total energy + Delta-G solvation = -2680.151550 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.49125 -40.26850 -36.81642 -35.03008 -32.48979 -31.77794 -28.58308 -27.54963 -27.01040 -24.50760 -23.87844 -21.15122 -20.89929 -19.13033 -17.96169 -17.30489 -17.10394 -16.72346 -16.55244 -16.03434 -15.81473 -15.45389 -14.95707 -14.79211 -14.45974 -13.87387 -13.50688 -13.13271 -12.88887 -12.77211 -12.52453 -12.18985 -12.04192 -11.79216 -11.64201 -11.20799 -11.15360 -10.87714 -10.62810 -10.37373 -9.15497 -8.35738 -6.39786 1.24100 1.31126 1.39035 2.23052 2.74684 2.90413 2.92292 3.06473 3.44712 3.92950 4.11646 4.19946 4.25712 4.28652 4.31629 4.40005 4.45695 4.48765 4.57911 4.65192 4.76210 4.85259 4.91759 5.02801 5.06827 5.17138 5.20210 5.30332 5.38781 5.91200 6.15333 6.27728 6.57189 6.67650 7.24491 8.79612 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028660 B = 0.009663 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.750915 B = 2896.840742 C = 3677.284225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.162 3.838 10 H -0.009 1.009 11 C 0.065 3.935 12 O -0.411 6.411 13 C 0.058 3.942 14 C 0.012 3.988 15 N -0.532 5.532 16 C 0.069 3.931 17 C -0.143 4.143 18 C 0.041 3.959 19 O -0.405 6.405 20 C 0.041 3.959 21 H 0.269 0.731 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.126 0.874 26 H 0.031 0.969 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.591 -6.720 1.107 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.755 3.245 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.053 3.947 10 H 0.008 0.992 11 C -0.011 4.011 12 O -0.330 6.330 13 C -0.019 4.019 14 C -0.116 4.116 15 N -0.257 5.257 16 C -0.059 4.059 17 C -0.162 4.162 18 C -0.036 4.036 19 O -0.324 6.324 20 C -0.035 4.035 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.144 0.856 26 H 0.049 0.951 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.466 -6.940 0.751 13.423 hybrid contribution -0.291 1.366 0.695 1.560 sum 11.175 -5.574 1.447 12.571 Atomic orbital electron populations 1.69983 1.07648 1.28128 1.51707 1.25631 0.95404 1.02071 0.94372 0.86176 0.79017 0.80168 0.79174 1.18736 1.21497 1.18297 1.21038 0.89570 0.93658 1.50321 0.92787 1.20058 0.94634 0.86908 0.93062 0.99196 1.23066 0.79738 0.99392 0.98930 1.87852 1.21164 1.28809 1.95179 1.22907 0.99958 0.82002 0.96985 1.22993 0.88188 1.02334 0.98088 1.62113 1.07855 1.13639 1.42063 1.22037 1.00831 0.92574 0.90484 1.24315 0.96346 0.94311 1.01205 1.24078 0.87984 0.93527 0.98017 1.89611 1.21380 1.33706 1.87702 1.24268 0.95546 0.86510 0.97190 0.92180 0.92707 0.91486 0.92201 0.85624 0.95076 0.87340 0.91481 0.95420 0.87690 0.89554 0.87966 0.87393 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.23 13.96 21.45 0.30 -55.93 16 2 C 0.02 1.37 5.45 84.65 0.46 1.83 16 3 Si 0.93 43.84 24.35 68.60 1.67 45.51 16 4 H -0.26 -11.77 6.90 99.48 0.69 -11.08 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -11.92 6.53 99.48 0.65 -11.27 16 7 C -0.51 -27.84 8.38 25.60 0.21 -27.63 16 8 H 0.05 3.25 6.82 -2.91 -0.02 3.23 16 9 C 0.16 7.56 1.56 44.18 0.07 7.62 16 10 H -0.01 -0.47 7.19 -2.39 -0.02 -0.48 16 11 C 0.07 2.89 5.74 72.02 0.41 3.30 16 12 O -0.41 -15.99 10.83 -148.98 -1.61 -17.60 16 13 C 0.06 1.70 7.01 72.01 0.50 2.21 16 14 C 0.01 0.36 5.18 86.31 0.45 0.81 16 15 N -0.53 -20.58 4.53 -874.40 -3.96 -24.54 16 16 C 0.07 2.44 4.68 86.30 0.40 2.84 16 17 C -0.14 -3.96 3.66 -10.10 -0.04 -4.00 16 18 C 0.04 1.04 8.79 72.27 0.63 1.68 16 19 O -0.40 -11.16 12.45 -148.98 -1.86 -13.02 16 20 C 0.04 0.96 7.06 72.27 0.51 1.47 16 21 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 22 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 23 H 0.07 3.08 3.39 -2.39 -0.01 3.07 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.13 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.11 2.54 5.42 -2.39 -0.01 2.53 16 28 H 0.07 2.84 6.05 -2.39 -0.01 2.82 16 29 H 0.03 0.96 7.81 -2.38 -0.02 0.94 16 30 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.09 2.09 8.10 -2.38 -0.02 2.07 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.11 2.06 7.49 -2.39 -0.02 2.04 16 34 H 0.08 1.85 7.89 -2.38 -0.02 1.83 16 Total: -1.00 -64.15 261.47 -0.83 -64.98 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.01 Total: 10.46 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 3.62 Total: -9.87 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.66 Total: -80.47 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -3.47 Total: -30.62 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.67 Total: 45.51 kcal Total: -64.15 -0.83 -64.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.579 kcal (2) G-P(sol) polarization free energy of solvation -64.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds