Wall clock time and date at job start Mon Mar 30 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00255 * 2 1 4 4 H 1.48501 * 109.47046 * 269.99400 * 3 2 1 5 5 H 1.48497 * 109.47163 * 29.99779 * 3 2 1 6 6 H 1.48503 * 109.47243 * 149.99909 * 3 2 1 7 7 C 1.37878 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99958 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99965 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47076 * 184.91852 * 9 7 2 11 11 C 1.53085 * 109.55904 * 61.23508 * 10 9 7 12 12 O 1.43010 * 109.29404 * 63.24316 * 11 10 9 13 13 C 1.43020 * 113.70898 * 58.70162 * 12 11 10 14 14 C 1.53088 * 109.28170 * 301.25732 * 13 12 11 15 15 N 1.47077 * 109.55837 * 181.09896 * 10 9 7 16 16 C 1.47002 * 110.76901 * 61.87316 * 15 10 9 17 17 C 1.53087 * 109.29583 * 58.53789 * 16 15 10 18 18 O 1.43017 * 109.24159 * 303.11840 * 17 16 15 19 19 C 1.43000 * 113.71180 * 58.72843 * 18 17 16 20 20 H 0.96999 * 119.99558 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47021 * 64.91798 * 9 7 2 22 22 H 1.08997 * 109.47304 * 304.91449 * 9 7 2 23 23 H 1.09009 * 109.49892 * 303.29902 * 11 10 9 24 24 H 1.08993 * 109.50564 * 183.19817 * 11 10 9 25 25 H 1.08999 * 109.50934 * 61.21591 * 13 12 11 26 26 H 1.09007 * 109.50286 * 181.30599 * 13 12 11 27 27 H 1.08996 * 109.50089 * 176.85392 * 14 13 12 28 28 H 1.09009 * 109.50108 * 296.95656 * 14 13 12 29 29 H 1.08992 * 109.50052 * 178.49221 * 16 15 10 30 30 H 1.09008 * 109.49950 * 298.56176 * 16 15 10 31 31 H 1.09005 * 109.50934 * 63.04924 * 17 16 15 32 32 H 1.09003 * 109.50882 * 183.13912 * 17 16 15 33 33 H 1.08996 * 109.50430 * 181.34962 * 19 18 17 34 34 H 1.09005 * 109.50384 * 61.24311 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6314 -0.1220 11 6 3.5383 -3.2352 -1.4432 12 8 4.1024 -2.5005 -2.5328 13 6 5.5325 -2.4870 -2.5381 14 6 6.0372 -1.8740 -1.2292 15 7 5.4920 -2.6360 -0.0952 16 6 5.9917 -2.1038 1.1807 17 6 5.4422 -2.9502 2.3319 18 8 4.0133 -2.9570 2.2715 19 6 3.4920 -3.4713 1.0432 20 1 -0.4849 0.8401 -0.0004 21 1 3.8744 -0.7583 0.9319 22 1 3.8752 -0.6062 -0.8415 23 1 2.4507 -3.1807 -1.4920 24 1 3.8540 -4.2766 -1.5044 25 1 5.9058 -3.5069 -2.6302 26 1 5.8878 -1.8920 -3.3796 27 1 7.1262 -1.9130 -1.2053 28 1 5.7082 -0.8369 -1.1625 29 1 7.0810 -2.1414 1.1890 30 1 5.6624 -1.0713 1.2982 31 1 5.8152 -3.9707 2.2437 32 1 5.7651 -2.5255 3.2824 33 1 2.4033 -3.4229 1.0614 34 1 3.8087 -4.5068 0.9187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:09 Heat of formation + Delta-G solvation = -74.497784 kcal Electronic energy + Delta-G solvation = -17446.188471 eV Core-core repulsion = 14765.555704 eV Total energy + Delta-G solvation = -2680.632768 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25132 -37.41502 -34.63306 -33.49177 -31.75344 -30.05197 -28.04532 -25.71413 -25.38247 -23.31954 -22.14495 -21.15140 -17.95673 -17.10542 -16.34090 -15.99165 -15.35413 -15.10669 -14.60486 -14.57654 -14.24152 -13.67862 -13.41794 -13.29754 -12.39495 -12.27557 -11.82705 -11.58979 -11.31814 -11.23468 -10.96778 -10.42269 -10.34790 -10.17169 -9.97884 -9.80551 -9.43102 -8.99125 -8.80858 -8.48491 -7.82453 -6.01943 -3.97853 3.32277 3.38905 3.41852 4.08932 4.38524 4.38780 4.48489 5.16606 5.29718 5.31111 5.32472 5.48190 5.51512 5.61855 5.71463 5.72072 5.77447 5.84986 5.95196 6.01965 6.14816 6.15764 6.48576 6.56611 6.65148 7.06324 7.17404 7.36086 7.42316 7.67763 7.68549 7.83600 8.50749 8.98037 9.61192 11.11051 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.012858 C = 0.011105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.767073 B = 2177.027023 C = 2520.690984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.505 4.505 8 H 0.075 0.925 9 C -0.022 4.022 10 C 0.049 3.951 11 C 0.088 3.912 12 O -0.372 6.372 13 C 0.065 3.935 14 C 0.014 3.986 15 N -0.531 5.531 16 C 0.014 3.986 17 C 0.065 3.935 18 O -0.371 6.371 19 C 0.087 3.913 20 H 0.262 0.738 21 H 0.020 0.980 22 H 0.019 0.981 23 H 0.113 0.887 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.498 -5.763 -0.344 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.093 0.907 9 C -0.060 4.060 10 C -0.040 4.040 11 C 0.011 3.989 12 O -0.290 6.290 13 C -0.013 4.013 14 C -0.114 4.114 15 N -0.257 5.257 16 C -0.114 4.114 17 C -0.013 4.013 18 O -0.289 6.289 19 C 0.010 3.990 20 H 0.072 0.928 21 H 0.039 0.961 22 H 0.037 0.963 23 H 0.131 0.869 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.275 -5.985 -0.375 13.661 hybrid contribution 0.611 1.712 0.061 1.819 sum 12.886 -4.273 -0.314 13.579 Atomic orbital electron populations 1.69891 1.06136 1.26766 1.51300 1.24923 0.94631 0.98879 0.94584 0.86818 0.80218 0.84109 0.78278 1.20386 1.21457 1.19637 1.20904 0.88627 0.94318 1.50524 0.90661 1.19938 0.98322 0.91352 0.96419 1.22288 0.85677 0.99407 0.96621 1.22592 0.99846 0.92425 0.84063 1.88051 1.18414 1.74791 1.47713 1.22545 0.82659 0.99915 0.96184 1.22769 0.99307 0.97271 0.92042 1.62795 1.08598 1.52404 1.01886 1.22754 0.99454 0.98665 0.90539 1.22539 0.82557 0.98729 0.97426 1.88048 1.18965 1.85160 1.36742 1.22599 1.00207 0.93872 0.82280 0.92805 0.96144 0.96259 0.86920 0.94200 0.93137 0.89235 0.90669 0.93299 0.90722 0.93203 0.93177 0.89227 0.86932 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.48 27.37 -169.99 -4.65 17.83 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.81 6.69 56.52 0.38 -6.43 16 7 C -0.51 -14.05 8.13 -34.44 -0.28 -14.33 16 8 H 0.08 2.17 5.98 -52.49 -0.31 1.86 16 9 C -0.02 -0.53 2.19 -27.88 -0.06 -0.59 16 10 C 0.05 0.99 0.41 -131.41 -0.05 0.94 16 11 C 0.09 1.70 5.50 37.20 0.20 1.90 16 12 O -0.37 -7.36 10.27 -35.23 -0.36 -7.72 16 13 C 0.06 1.01 7.00 37.20 0.26 1.27 16 14 C 0.01 0.23 5.27 -3.67 -0.02 0.21 16 15 N -0.53 -9.28 4.66 -218.37 -1.02 -10.30 16 16 C 0.01 0.23 5.27 -3.72 -0.02 0.21 16 17 C 0.07 1.01 7.01 37.20 0.26 1.28 16 18 O -0.37 -7.35 10.33 -35.23 -0.36 -7.71 16 19 C 0.09 1.69 5.48 37.20 0.20 1.89 16 20 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 21 H 0.02 0.52 5.49 -51.93 -0.29 0.24 16 22 H 0.02 0.49 5.28 -51.93 -0.27 0.21 16 23 H 0.11 2.36 6.71 -51.92 -0.35 2.01 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.89 6.43 -51.92 -0.33 0.56 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.92 6.39 -51.92 -0.33 0.59 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.11 2.35 6.38 -51.93 -0.33 2.02 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 255.34 15.07 3.85 3.85 Total: -1.00 -31.62 255.34 -6.14 -37.75 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.76 Total: -1.48 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.40 Total: -5.25 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.24 Total: -37.26 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.73 Total: -15.44 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.65 Total: 17.83 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.62 -6.14 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.744 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds