Wall clock time and date at job start Mon Mar 30 2020 02:49:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1
5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1
7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2
11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7
12 12 C 1.47191 * 111.00235 * 292.99989 * 11 10 9
13 13 C 1.53147 * 109.02357 * 296.14564 * 12 11 10
14 14 O 1.43014 * 109.24611 * 302.75187 * 13 12 11
15 15 C 1.43003 * 113.81403 * 58.43453 * 14 13 12
16 16 C 1.47186 * 111.00322 * 170.00057 * 11 10 9
17 17 C 1.53158 * 109.02673 * 183.69086 * 16 11 10
18 18 O 1.44400 * 108.50196 * 302.01758 * 17 16 11
19 19 C 1.43007 * 113.59893 * 59.08553 * 18 17 16
20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3
21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7
24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7
25 25 H 1.09006 * 109.65400 * 56.20966 * 12 11 10
26 26 H 1.09007 * 109.50359 * 182.82449 * 13 12 11
27 27 H 1.08999 * 109.55011 * 62.70700 * 13 12 11
28 28 H 1.09000 * 109.51508 * 181.63164 * 15 14 13
29 29 H 1.09002 * 109.55902 * 61.50024 * 15 14 13
30 30 H 1.09003 * 109.66108 * 303.75448 * 16 11 10
31 31 H 1.08996 * 109.50676 * 62.68324 * 17 16 11
32 32 H 1.08994 * 109.51017 * 182.82463 * 17 16 11
33 33 H 1.09002 * 109.51046 * 181.24371 * 19 18 17
34 34 H 1.08995 * 109.56015 * 61.11326 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2842 2.7464 -0.0006
6 1 3.1030 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 7 1.5106 -4.9343 0.0012
12 6 0.7823 -5.1223 1.2663
13 6 1.7921 -5.2236 2.4133
14 8 2.6979 -6.2985 2.1504
15 6 3.4159 -6.1611 0.9213
16 6 2.4187 -6.0678 -0.2374
17 6 1.5966 -7.3574 -0.3196
18 8 0.8594 -7.5102 0.9126
19 6 -0.0255 -6.4212 1.1891
20 1 -0.4850 0.8401 0.0004
21 1 0.6239 -2.5567 0.8903
22 1 0.6246 -2.5571 -0.8897
23 1 2.8718 -3.6044 -0.8895
24 1 2.8718 -3.6044 0.8904
25 1 0.1180 -4.2750 1.4364
26 1 1.2637 -5.4131 3.3477
27 1 2.3486 -4.2898 2.4928
28 1 4.0609 -7.0279 0.7775
29 1 4.0232 -5.2565 0.9526
30 1 2.9569 -5.9159 -1.1731
31 1 0.9144 -7.3008 -1.1677
32 1 2.2659 -8.2083 -0.4461
33 1 -0.5291 -6.5938 2.1403
34 1 -0.7666 -6.3423 0.3938
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307691983.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:26
Heat of formation + Delta-G solvation = -79.462546 kcal
Electronic energy + Delta-G solvation = -16917.638438 eV
Core-core repulsion = 14236.790382 eV
Total energy + Delta-G solvation = -2680.848056 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.68736 -36.55508 -35.22110 -33.03208 -32.61627 -30.09408 -26.98452 -26.70730
-24.80373 -23.82202 -22.80883 -20.64174 -18.13619 -16.96819 -16.11055 -16.00908
-15.58721 -15.39173 -15.16582 -14.63478 -14.41569 -14.07657 -13.42516 -13.02708
-12.30924 -11.93539 -11.87588 -11.62135 -11.36175 -11.04436 -10.97366 -10.89244
-10.59417 -10.26646 -10.07493 -9.75714 -9.56384 -9.22879 -9.08341 -8.38855
-7.60306 -6.05560 -4.08609 3.29415 3.34223 3.36194 3.90526 4.16079
4.27905 4.44208 4.91030 4.99732 5.15979 5.19959 5.30408 5.31886
5.54415 5.61540 5.72396 5.77397 5.83268 5.85256 5.87085 5.95231
6.13867 6.25009 6.38359 6.84424 7.30308 7.32608 7.38281 7.39918
7.67647 7.78712 7.98815 8.35294 8.97832 9.55484 11.05624
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.046993 B = 0.006964 C = 0.006756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 595.690075 B = 4019.524567 C = 4143.766871
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.060 3.940
3 Si 0.893 3.107
4 H -0.277 1.277
5 H -0.286 1.286
6 H -0.277 1.277
7 C -0.525 4.525
8 H 0.053 0.947
9 C 0.031 3.969
10 C 0.054 3.946
11 N -0.520 5.520
12 C 0.010 3.990
13 C 0.032 3.968
14 O -0.366 6.366
15 C 0.035 3.965
16 C 0.006 3.994
17 C 0.076 3.924
18 O -0.373 6.373
19 C 0.075 3.925
20 H 0.262 0.738
21 H 0.016 0.984
22 H 0.025 0.975
23 H 0.063 0.937
24 H 0.026 0.974
25 H 0.112 0.888
26 H 0.094 0.906
27 H 0.058 0.942
28 H 0.091 0.909
29 H 0.051 0.949
30 H 0.096 0.904
31 H 0.059 0.941
32 H 0.090 0.910
33 H 0.092 0.908
34 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.897 -12.362 1.361 12.769
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.142 4.142
3 Si 0.721 3.279
4 H -0.202 1.202
5 H -0.212 1.212
6 H -0.203 1.203
7 C -0.564 4.564
8 H 0.071 0.929
9 C -0.006 4.006
10 C -0.072 4.072
11 N -0.244 5.244
12 C -0.100 4.100
13 C -0.047 4.047
14 O -0.284 6.284
15 C -0.044 4.044
16 C -0.103 4.103
17 C -0.001 4.001
18 O -0.291 6.291
19 C -0.002 4.002
20 H 0.071 0.929
21 H 0.034 0.966
22 H 0.043 0.957
23 H 0.081 0.919
24 H 0.044 0.956
25 H 0.130 0.870
26 H 0.112 0.888
27 H 0.076 0.924
28 H 0.109 0.891
29 H 0.069 0.931
30 H 0.114 0.886
31 H 0.077 0.923
32 H 0.108 0.892
33 H 0.110 0.890
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 2.432 -12.541 1.209 12.832
hybrid contribution 1.053 1.591 0.232 1.922
sum 3.485 -10.949 1.442 11.581
Atomic orbital electron populations
1.69954 1.06019 1.26796 1.50323 1.24983 0.94844 0.99193 0.95174
0.86650 0.79590 0.83092 0.78615 1.20218 1.21199 1.20276 1.21120
0.92910 0.90990 1.51336 0.92882 1.19058 0.93850 0.89965 0.97744
1.22486 0.97186 0.88249 0.99279 1.62946 1.27357 1.02209 1.31879
1.23078 0.97215 1.00126 0.89538 1.23111 0.92201 0.90645 0.98699
1.88011 1.56380 1.45655 1.38358 1.23046 0.93959 1.01784 0.85600
1.23064 0.94588 0.93471 0.99189 1.22752 0.94336 0.95754 0.87288
1.88244 1.57550 1.42711 1.40579 1.22545 0.91339 0.85219 1.01086
0.92863 0.96587 0.95706 0.91861 0.95591 0.87022 0.88824 0.92366
0.89094 0.93052 0.88596 0.92262 0.89159 0.88951 0.92572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16
2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16
3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16
4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16
8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16
9 C 0.03 0.79 4.93 -27.88 -0.14 0.65 16
10 C 0.05 1.12 4.19 -3.83 -0.02 1.10 16
11 N -0.52 -9.35 4.69 -217.89 -1.02 -10.37 16
12 C 0.01 0.16 2.88 -67.40 -0.19 -0.03 16
13 C 0.03 0.52 6.02 37.23 0.22 0.74 16
14 O -0.37 -6.16 9.38 -56.76 -0.53 -6.69 16
15 C 0.03 0.51 6.04 37.24 0.22 0.74 16
16 C 0.01 0.10 3.00 -67.39 -0.20 -0.11 16
17 C 0.08 1.03 6.53 37.24 0.24 1.28 16
18 O -0.37 -5.84 9.42 -56.76 -0.53 -6.38 16
19 C 0.08 1.12 6.41 37.24 0.24 1.36 16
20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
21 H 0.02 0.42 6.51 -51.93 -0.34 0.09 16
22 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16
23 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16
24 H 0.03 0.54 5.04 -51.93 -0.26 0.28 16
25 H 0.11 2.05 6.36 -51.93 -0.33 1.72 16
26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
27 H 0.06 1.03 6.45 -51.93 -0.34 0.70 16
28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16
29 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16
30 H 0.10 1.31 8.07 -51.93 -0.42 0.90 16
31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 262.56 15.07 3.96 3.96
Total: -1.00 -30.59 262.56 -7.40 -38.00
By element:
Atomic # 1 Polarization: 3.32 SS G_CDS: -4.96 Total: -1.63 kcal
Atomic # 6 Polarization: -7.56 SS G_CDS: -0.03 Total: -7.59 kcal
Atomic # 7 Polarization: -35.78 SS G_CDS: -0.29 Total: -36.06 kcal
Atomic # 8 Polarization: -12.00 SS G_CDS: -1.07 Total: -13.07 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -30.59 -7.40 -38.00 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307691983.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.464 kcal
(2) G-P(sol) polarization free energy of solvation -30.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds