Wall clock time and date at job start Mon Mar 30 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.47191 * 111.00235 * 292.99989 * 11 10 9 13 13 C 1.53147 * 109.02357 * 296.14564 * 12 11 10 14 14 O 1.43014 * 109.24611 * 302.75187 * 13 12 11 15 15 C 1.43003 * 113.81403 * 58.43453 * 14 13 12 16 16 C 1.47186 * 111.00322 * 170.00057 * 11 10 9 17 17 C 1.53158 * 109.02673 * 183.69086 * 16 11 10 18 18 O 1.44400 * 108.50196 * 302.01758 * 17 16 11 19 19 C 1.43007 * 113.59893 * 59.08553 * 18 17 16 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09006 * 109.65400 * 56.20966 * 12 11 10 26 26 H 1.09007 * 109.50359 * 182.82449 * 13 12 11 27 27 H 1.08999 * 109.55011 * 62.70700 * 13 12 11 28 28 H 1.09000 * 109.51508 * 181.63164 * 15 14 13 29 29 H 1.09002 * 109.55902 * 61.50024 * 15 14 13 30 30 H 1.09003 * 109.66108 * 303.75448 * 16 11 10 31 31 H 1.08996 * 109.50676 * 62.68324 * 17 16 11 32 32 H 1.08994 * 109.51017 * 182.82463 * 17 16 11 33 33 H 1.09002 * 109.51046 * 181.24371 * 19 18 17 34 34 H 1.08995 * 109.56015 * 61.11326 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.7823 -5.1223 1.2663 13 6 1.7921 -5.2236 2.4133 14 8 2.6979 -6.2985 2.1504 15 6 3.4159 -6.1611 0.9213 16 6 2.4187 -6.0678 -0.2374 17 6 1.5966 -7.3574 -0.3196 18 8 0.8594 -7.5102 0.9126 19 6 -0.0255 -6.4212 1.1891 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.1180 -4.2750 1.4364 26 1 1.2637 -5.4131 3.3477 27 1 2.3486 -4.2898 2.4928 28 1 4.0609 -7.0279 0.7775 29 1 4.0232 -5.2565 0.9526 30 1 2.9569 -5.9159 -1.1731 31 1 0.9144 -7.3008 -1.1677 32 1 2.2659 -8.2083 -0.4461 33 1 -0.5291 -6.5938 2.1403 34 1 -0.7666 -6.3423 0.3938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307691983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:26 Heat of formation + Delta-G solvation = -79.462546 kcal Electronic energy + Delta-G solvation = -16917.638438 eV Core-core repulsion = 14236.790382 eV Total energy + Delta-G solvation = -2680.848056 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68736 -36.55508 -35.22110 -33.03208 -32.61627 -30.09408 -26.98452 -26.70730 -24.80373 -23.82202 -22.80883 -20.64174 -18.13619 -16.96819 -16.11055 -16.00908 -15.58721 -15.39173 -15.16582 -14.63478 -14.41569 -14.07657 -13.42516 -13.02708 -12.30924 -11.93539 -11.87588 -11.62135 -11.36175 -11.04436 -10.97366 -10.89244 -10.59417 -10.26646 -10.07493 -9.75714 -9.56384 -9.22879 -9.08341 -8.38855 -7.60306 -6.05560 -4.08609 3.29415 3.34223 3.36194 3.90526 4.16079 4.27905 4.44208 4.91030 4.99732 5.15979 5.19959 5.30408 5.31886 5.54415 5.61540 5.72396 5.77397 5.83268 5.85256 5.87085 5.95231 6.13867 6.25009 6.38359 6.84424 7.30308 7.32608 7.38281 7.39918 7.67647 7.78712 7.98815 8.35294 8.97832 9.55484 11.05624 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.046993 B = 0.006964 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.690075 B = 4019.524567 C = 4143.766871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.054 3.946 11 N -0.520 5.520 12 C 0.010 3.990 13 C 0.032 3.968 14 O -0.366 6.366 15 C 0.035 3.965 16 C 0.006 3.994 17 C 0.076 3.924 18 O -0.373 6.373 19 C 0.075 3.925 20 H 0.262 0.738 21 H 0.016 0.984 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.026 0.974 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -12.362 1.361 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.072 4.072 11 N -0.244 5.244 12 C -0.100 4.100 13 C -0.047 4.047 14 O -0.284 6.284 15 C -0.044 4.044 16 C -0.103 4.103 17 C -0.001 4.001 18 O -0.291 6.291 19 C -0.002 4.002 20 H 0.071 0.929 21 H 0.034 0.966 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.432 -12.541 1.209 12.832 hybrid contribution 1.053 1.591 0.232 1.922 sum 3.485 -10.949 1.442 11.581 Atomic orbital electron populations 1.69954 1.06019 1.26796 1.50323 1.24983 0.94844 0.99193 0.95174 0.86650 0.79590 0.83092 0.78615 1.20218 1.21199 1.20276 1.21120 0.92910 0.90990 1.51336 0.92882 1.19058 0.93850 0.89965 0.97744 1.22486 0.97186 0.88249 0.99279 1.62946 1.27357 1.02209 1.31879 1.23078 0.97215 1.00126 0.89538 1.23111 0.92201 0.90645 0.98699 1.88011 1.56380 1.45655 1.38358 1.23046 0.93959 1.01784 0.85600 1.23064 0.94588 0.93471 0.99189 1.22752 0.94336 0.95754 0.87288 1.88244 1.57550 1.42711 1.40579 1.22545 0.91339 0.85219 1.01086 0.92863 0.96587 0.95706 0.91861 0.95591 0.87022 0.88824 0.92366 0.89094 0.93052 0.88596 0.92262 0.89159 0.88951 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.79 4.93 -27.88 -0.14 0.65 16 10 C 0.05 1.12 4.19 -3.83 -0.02 1.10 16 11 N -0.52 -9.35 4.69 -217.89 -1.02 -10.37 16 12 C 0.01 0.16 2.88 -67.40 -0.19 -0.03 16 13 C 0.03 0.52 6.02 37.23 0.22 0.74 16 14 O -0.37 -6.16 9.38 -56.76 -0.53 -6.69 16 15 C 0.03 0.51 6.04 37.24 0.22 0.74 16 16 C 0.01 0.10 3.00 -67.39 -0.20 -0.11 16 17 C 0.08 1.03 6.53 37.24 0.24 1.28 16 18 O -0.37 -5.84 9.42 -56.76 -0.53 -6.38 16 19 C 0.08 1.12 6.41 37.24 0.24 1.36 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.02 0.42 6.51 -51.93 -0.34 0.09 16 22 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 24 H 0.03 0.54 5.04 -51.93 -0.26 0.28 16 25 H 0.11 2.05 6.36 -51.93 -0.33 1.72 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.03 6.45 -51.93 -0.34 0.70 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16 30 H 0.10 1.31 8.07 -51.93 -0.42 0.90 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 262.56 15.07 3.96 3.96 Total: -1.00 -30.59 262.56 -7.40 -38.00 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.96 Total: -1.63 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.03 Total: -7.59 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.29 Total: -36.06 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -1.07 Total: -13.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.59 -7.40 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307691983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.464 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds