Wall clock time and date at job start Mon Mar 30 2020 03:26:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52998 * 109.98886 * 2 1
4 4 C 1.54101 * 109.87923 * 121.08069 * 2 1 3
5 5 C 1.54815 * 104.18923 * 117.39878 * 4 2 1
6 6 C 1.55006 * 102.08999 * 339.11791 * 5 4 2
7 7 H 1.08997 * 110.61673 * 278.36486 * 6 5 4
8 8 C 1.52993 * 110.61532 * 155.52456 * 6 5 4
9 9 N 1.46504 * 109.46982 * 180.02562 * 8 6 5
10 10 C 1.34774 * 120.00240 * 180.02562 * 9 8 6
11 11 O 1.21691 * 119.99707 * 0.02562 * 10 9 8
12 12 C 1.46374 * 119.99951 * 179.97438 * 10 9 8
13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 9
14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 9
15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10
16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10
17 17 H 1.48498 * 109.46870 * 270.00007 * 16 14 12
18 18 H 1.48501 * 109.47085 * 29.99786 * 16 14 12
19 19 H 1.48490 * 109.47554 * 149.99845 * 16 14 12
20 20 O 1.43740 * 109.88300 * 238.91504 * 2 1 3
21 21 H 1.08996 * 109.46968 * 298.91556 * 1 2 3
22 22 H 1.08999 * 109.47258 * 58.92389 * 1 2 3
23 23 H 1.09001 * 109.46888 * 178.91953 * 1 2 3
24 24 H 1.09006 * 109.47311 * 181.08263 * 3 2 1
25 25 H 1.09005 * 109.47222 * 301.07731 * 3 2 1
26 26 H 1.08995 * 109.47562 * 61.08211 * 3 2 1
27 27 H 1.08997 * 110.49148 * 358.71972 * 4 2 1
28 28 H 1.09004 * 110.60035 * 236.12672 * 4 2 1
29 29 H 1.08994 * 110.91028 * 220.92172 * 5 4 2
30 30 H 1.08999 * 110.91023 * 97.31391 * 5 4 2
31 31 H 1.08994 * 109.47296 * 60.00143 * 8 6 5
32 32 H 1.09000 * 109.47551 * 299.99882 * 8 6 5
33 33 H 0.97005 * 119.99919 * 359.97438 * 9 8 6
34 34 H 0.97001 * 119.99601 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0530 1.4378 0.0000
4 6 2.0540 -0.7481 1.2411
5 6 2.8325 -1.9524 0.6577
6 6 2.2281 -2.0714 -0.7647
7 1 1.2828 -2.6133 -0.7359
8 6 3.2127 -2.7590 -1.7126
9 7 2.6174 -2.8577 -3.0475
10 6 3.3077 -3.4321 -4.0525
11 8 4.4254 -3.8691 -3.8509
12 6 2.7126 -3.5312 -5.3861
13 1 1.7206 -3.1437 -5.5649
14 6 3.4298 -4.1286 -6.4303
15 7 4.6304 -4.5970 -6.2141
16 14 2.6707 -4.2544 -8.1324
17 1 1.9224 -5.5320 -8.2474
18 1 1.7416 -3.1157 -8.3455
19 1 3.7444 -4.2157 -9.1574
20 8 2.0188 -0.6979 -1.1576
21 1 -0.3633 0.4969 0.8995
22 1 -0.3634 0.5304 -0.8802
23 1 -0.3633 -1.0275 -0.0194
24 1 3.1428 1.4281 -0.0194
25 1 1.6786 1.9606 -0.8802
26 1 1.7102 1.9492 0.8995
27 1 1.2238 -1.0930 1.8575
28 1 2.7192 -0.1090 1.8218
29 1 2.6434 -2.8557 1.2375
30 1 3.9004 -1.7390 0.6099
31 1 3.4381 -3.7582 -1.3401
32 1 4.1319 -2.1757 -1.7673
33 1 1.7260 -2.5103 -3.2080
34 1 5.1269 -5.0111 -6.9372
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000335684291.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:26
Heat of formation + Delta-G solvation = -101.452398 kcal
Electronic energy + Delta-G solvation = -15951.209423 eV
Core-core repulsion = 13269.407816 eV
Total energy + Delta-G solvation = -2681.801607 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.83874 -37.09057 -34.00493 -32.59092 -32.18972 -31.47032 -27.85351 -27.41823
-25.80079 -23.06122 -21.02136 -20.05952 -19.49139 -17.14636 -16.46267 -15.40872
-15.15798 -14.89747 -14.19222 -13.91061 -13.74296 -13.47834 -13.07376 -12.58967
-12.32597 -12.14071 -11.94475 -11.71051 -11.43313 -11.29465 -11.17445 -10.85956
-10.75399 -10.66014 -10.54741 -10.34590 -10.14460 -9.45492 -8.78747 -7.54044
-7.39232 -6.11700 -4.56220 3.18790 3.25214 3.29335 3.86216 4.16767
4.56077 4.66205 4.68457 4.79644 4.91007 5.11792 5.21802 5.42152
5.50339 5.52541 5.58838 5.68887 5.74607 5.77950 5.85923 5.87675
5.97621 6.10675 6.13878 6.25443 6.45511 6.60357 7.21364 7.50444
8.03303 8.19289 8.41695 9.09612 9.63840 10.67702 10.86752
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.045466 B = 0.005658 C = 0.005296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 615.692169 B = 4947.707014 C = 5285.929607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.093 3.907
3 C -0.142 4.142
4 C -0.145 4.145
5 C -0.148 4.148
6 C 0.068 3.932
7 H 0.070 0.930
8 C 0.142 3.858
9 N -0.763 5.763
10 C 0.555 3.445
11 O -0.584 6.584
12 C -0.545 4.545
13 H 0.067 0.933
14 C 0.087 3.913
15 N -0.770 5.770
16 Si 0.908 3.092
17 H -0.272 1.272
18 H -0.265 1.265
19 H -0.280 1.280
20 O -0.354 6.354
21 H 0.061 0.939
22 H 0.063 0.937
23 H 0.058 0.942
24 H 0.062 0.938
25 H 0.062 0.938
26 H 0.064 0.936
27 H 0.073 0.927
28 H 0.075 0.925
29 H 0.079 0.921
30 H 0.080 0.920
31 H 0.060 0.940
32 H 0.055 0.945
33 H 0.383 0.617
34 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.701 8.097 13.078 17.202
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.053 3.947
3 C -0.199 4.199
4 C -0.183 4.183
5 C -0.186 4.186
6 C 0.011 3.989
7 H 0.088 0.912
8 C 0.016 3.984
9 N -0.419 5.419
10 C 0.359 3.641
11 O -0.467 6.467
12 C -0.582 4.582
13 H 0.085 0.915
14 C -0.132 4.132
15 N -0.399 5.399
16 Si 0.732 3.268
17 H -0.198 1.198
18 H -0.189 1.189
19 H -0.205 1.205
20 O -0.274 6.274
21 H 0.080 0.920
22 H 0.082 0.918
23 H 0.077 0.923
24 H 0.081 0.919
25 H 0.081 0.919
26 H 0.083 0.917
27 H 0.092 0.908
28 H 0.094 0.906
29 H 0.098 0.902
30 H 0.098 0.902
31 H 0.079 0.921
32 H 0.073 0.927
33 H 0.214 0.786
34 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -6.651 7.777 12.951 16.506
hybrid contribution -0.888 0.019 -0.655 1.103
sum -7.539 7.796 12.296 16.395
Atomic orbital electron populations
1.22250 0.95170 1.02373 1.02141 1.22081 0.93465 0.93312 0.85837
1.21880 1.01808 0.94211 1.02011 1.23021 1.00237 0.97351 0.97686
1.23108 1.01081 0.98375 0.96040 1.23429 0.98225 0.83894 0.93393
0.91223 1.20904 0.94946 0.98248 0.84267 1.46029 1.20236 1.67016
1.08580 1.18213 0.84884 0.77050 0.83988 1.90588 1.20405 1.52117
1.83626 1.20891 1.02949 1.41290 0.93041 0.91460 1.25711 0.94185
0.93305 1.00004 1.70034 1.09611 1.27913 1.32333 0.86377 0.79305
0.79197 0.81880 1.19791 1.18925 1.20496 1.89032 1.85737 1.20346
1.32242 0.92023 0.91834 0.92328 0.91897 0.91917 0.91748 0.90838
0.90590 0.90249 0.90162 0.92149 0.92721 0.78585 0.92207
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.72 8.61 37.16 0.32 -1.40 16
2 C 0.09 1.13 1.19 -90.05 -0.11 1.03 16
3 C -0.14 -1.54 8.68 37.16 0.32 -1.22 16
4 C -0.15 -1.52 6.27 -25.20 -0.16 -1.68 16
5 C -0.15 -1.81 6.59 -24.72 -0.16 -1.97 16
6 C 0.07 1.06 3.32 -25.68 -0.09 0.98 16
7 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16
8 C 0.14 2.87 5.42 -4.04 -0.02 2.85 16
9 N -0.76 -18.26 5.53 -61.72 -0.34 -18.60 16
10 C 0.55 16.54 7.75 -12.99 -0.10 16.44 16
11 O -0.58 -19.63 15.02 5.20 0.08 -19.55 16
12 C -0.54 -16.01 9.54 -35.63 -0.34 -16.35 16
13 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16
14 C 0.09 2.51 5.50 -17.36 -0.10 2.42 16
15 N -0.77 -23.76 11.83 55.55 0.66 -23.10 16
16 Si 0.91 20.71 29.56 -169.99 -5.02 15.68 16
17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
18 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16
19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
20 O -0.35 -5.81 10.54 -35.23 -0.37 -6.18 16
21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
23 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16
24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16
28 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16
29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16
30 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16
31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
33 H 0.38 8.33 8.45 -40.82 -0.35 7.98 16
34 H 0.27 7.45 8.29 -40.82 -0.34 7.12 16
LS Contribution 286.09 15.07 4.31 4.31
Total: -1.00 -35.26 286.09 -6.45 -41.71
By element:
Atomic # 1 Polarization: 9.95 SS G_CDS: -5.33 Total: 4.62 kcal
Atomic # 6 Polarization: 1.53 SS G_CDS: -0.43 Total: 1.10 kcal
Atomic # 7 Polarization: -42.01 SS G_CDS: 0.32 Total: -41.70 kcal
Atomic # 8 Polarization: -25.44 SS G_CDS: -0.29 Total: -25.73 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -35.26 -6.45 -41.71 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000335684291.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.740 kcal
(2) G-P(sol) polarization free energy of solvation -35.258 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.998 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds