Wall clock time and date at job start Mon Mar 30 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.98886 * 2 1 4 4 C 1.54101 * 109.87923 * 121.08069 * 2 1 3 5 5 C 1.54815 * 104.18923 * 117.39878 * 4 2 1 6 6 C 1.55006 * 102.08999 * 339.11791 * 5 4 2 7 7 H 1.08997 * 110.61673 * 278.36486 * 6 5 4 8 8 C 1.52993 * 110.61532 * 155.52456 * 6 5 4 9 9 N 1.46504 * 109.46982 * 180.02562 * 8 6 5 10 10 C 1.34774 * 120.00240 * 180.02562 * 9 8 6 11 11 O 1.21691 * 119.99707 * 0.02562 * 10 9 8 12 12 C 1.46374 * 119.99951 * 179.97438 * 10 9 8 13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 9 14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 9 15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46870 * 270.00007 * 16 14 12 18 18 H 1.48501 * 109.47085 * 29.99786 * 16 14 12 19 19 H 1.48490 * 109.47554 * 149.99845 * 16 14 12 20 20 O 1.43740 * 109.88300 * 238.91504 * 2 1 3 21 21 H 1.08996 * 109.46968 * 298.91556 * 1 2 3 22 22 H 1.08999 * 109.47258 * 58.92389 * 1 2 3 23 23 H 1.09001 * 109.46888 * 178.91953 * 1 2 3 24 24 H 1.09006 * 109.47311 * 181.08263 * 3 2 1 25 25 H 1.09005 * 109.47222 * 301.07731 * 3 2 1 26 26 H 1.08995 * 109.47562 * 61.08211 * 3 2 1 27 27 H 1.08997 * 110.49148 * 358.71972 * 4 2 1 28 28 H 1.09004 * 110.60035 * 236.12672 * 4 2 1 29 29 H 1.08994 * 110.91028 * 220.92172 * 5 4 2 30 30 H 1.08999 * 110.91023 * 97.31391 * 5 4 2 31 31 H 1.08994 * 109.47296 * 60.00143 * 8 6 5 32 32 H 1.09000 * 109.47551 * 299.99882 * 8 6 5 33 33 H 0.97005 * 119.99919 * 359.97438 * 9 8 6 34 34 H 0.97001 * 119.99601 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0540 -0.7481 1.2411 5 6 2.8325 -1.9524 0.6577 6 6 2.2281 -2.0714 -0.7647 7 1 1.2828 -2.6133 -0.7359 8 6 3.2127 -2.7590 -1.7126 9 7 2.6174 -2.8577 -3.0475 10 6 3.3077 -3.4321 -4.0525 11 8 4.4254 -3.8691 -3.8509 12 6 2.7126 -3.5312 -5.3861 13 1 1.7206 -3.1437 -5.5649 14 6 3.4298 -4.1286 -6.4303 15 7 4.6304 -4.5970 -6.2141 16 14 2.6707 -4.2544 -8.1324 17 1 1.9224 -5.5320 -8.2474 18 1 1.7416 -3.1157 -8.3455 19 1 3.7444 -4.2157 -9.1574 20 8 2.0188 -0.6979 -1.1576 21 1 -0.3633 0.4969 0.8995 22 1 -0.3634 0.5304 -0.8802 23 1 -0.3633 -1.0275 -0.0194 24 1 3.1428 1.4281 -0.0194 25 1 1.6786 1.9606 -0.8802 26 1 1.7102 1.9492 0.8995 27 1 1.2238 -1.0930 1.8575 28 1 2.7192 -0.1090 1.8218 29 1 2.6434 -2.8557 1.2375 30 1 3.9004 -1.7390 0.6099 31 1 3.4381 -3.7582 -1.3401 32 1 4.1319 -2.1757 -1.7673 33 1 1.7260 -2.5103 -3.2080 34 1 5.1269 -5.0111 -6.9372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335684291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:26 Heat of formation + Delta-G solvation = -101.452398 kcal Electronic energy + Delta-G solvation = -15951.209423 eV Core-core repulsion = 13269.407816 eV Total energy + Delta-G solvation = -2681.801607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83874 -37.09057 -34.00493 -32.59092 -32.18972 -31.47032 -27.85351 -27.41823 -25.80079 -23.06122 -21.02136 -20.05952 -19.49139 -17.14636 -16.46267 -15.40872 -15.15798 -14.89747 -14.19222 -13.91061 -13.74296 -13.47834 -13.07376 -12.58967 -12.32597 -12.14071 -11.94475 -11.71051 -11.43313 -11.29465 -11.17445 -10.85956 -10.75399 -10.66014 -10.54741 -10.34590 -10.14460 -9.45492 -8.78747 -7.54044 -7.39232 -6.11700 -4.56220 3.18790 3.25214 3.29335 3.86216 4.16767 4.56077 4.66205 4.68457 4.79644 4.91007 5.11792 5.21802 5.42152 5.50339 5.52541 5.58838 5.68887 5.74607 5.77950 5.85923 5.87675 5.97621 6.10675 6.13878 6.25443 6.45511 6.60357 7.21364 7.50444 8.03303 8.19289 8.41695 9.09612 9.63840 10.67702 10.86752 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.045466 B = 0.005658 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.692169 B = 4947.707014 C = 5285.929607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.148 4.148 6 C 0.068 3.932 7 H 0.070 0.930 8 C 0.142 3.858 9 N -0.763 5.763 10 C 0.555 3.445 11 O -0.584 6.584 12 C -0.545 4.545 13 H 0.067 0.933 14 C 0.087 3.913 15 N -0.770 5.770 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.265 1.265 19 H -0.280 1.280 20 O -0.354 6.354 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.383 0.617 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 8.097 13.078 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.053 3.947 3 C -0.199 4.199 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.011 3.989 7 H 0.088 0.912 8 C 0.016 3.984 9 N -0.419 5.419 10 C 0.359 3.641 11 O -0.467 6.467 12 C -0.582 4.582 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.399 5.399 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.189 1.189 19 H -0.205 1.205 20 O -0.274 6.274 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.214 0.786 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.651 7.777 12.951 16.506 hybrid contribution -0.888 0.019 -0.655 1.103 sum -7.539 7.796 12.296 16.395 Atomic orbital electron populations 1.22250 0.95170 1.02373 1.02141 1.22081 0.93465 0.93312 0.85837 1.21880 1.01808 0.94211 1.02011 1.23021 1.00237 0.97351 0.97686 1.23108 1.01081 0.98375 0.96040 1.23429 0.98225 0.83894 0.93393 0.91223 1.20904 0.94946 0.98248 0.84267 1.46029 1.20236 1.67016 1.08580 1.18213 0.84884 0.77050 0.83988 1.90588 1.20405 1.52117 1.83626 1.20891 1.02949 1.41290 0.93041 0.91460 1.25711 0.94185 0.93305 1.00004 1.70034 1.09611 1.27913 1.32333 0.86377 0.79305 0.79197 0.81880 1.19791 1.18925 1.20496 1.89032 1.85737 1.20346 1.32242 0.92023 0.91834 0.92328 0.91897 0.91917 0.91748 0.90838 0.90590 0.90249 0.90162 0.92149 0.92721 0.78585 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.61 37.16 0.32 -1.40 16 2 C 0.09 1.13 1.19 -90.05 -0.11 1.03 16 3 C -0.14 -1.54 8.68 37.16 0.32 -1.22 16 4 C -0.15 -1.52 6.27 -25.20 -0.16 -1.68 16 5 C -0.15 -1.81 6.59 -24.72 -0.16 -1.97 16 6 C 0.07 1.06 3.32 -25.68 -0.09 0.98 16 7 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 8 C 0.14 2.87 5.42 -4.04 -0.02 2.85 16 9 N -0.76 -18.26 5.53 -61.72 -0.34 -18.60 16 10 C 0.55 16.54 7.75 -12.99 -0.10 16.44 16 11 O -0.58 -19.63 15.02 5.20 0.08 -19.55 16 12 C -0.54 -16.01 9.54 -35.63 -0.34 -16.35 16 13 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 14 C 0.09 2.51 5.50 -17.36 -0.10 2.42 16 15 N -0.77 -23.76 11.83 55.55 0.66 -23.10 16 16 Si 0.91 20.71 29.56 -169.99 -5.02 15.68 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 O -0.35 -5.81 10.54 -35.23 -0.37 -6.18 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 28 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.38 8.33 8.45 -40.82 -0.35 7.98 16 34 H 0.27 7.45 8.29 -40.82 -0.34 7.12 16 LS Contribution 286.09 15.07 4.31 4.31 Total: -1.00 -35.26 286.09 -6.45 -41.71 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.33 Total: 4.62 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.43 Total: 1.10 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.32 Total: -41.70 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.29 Total: -25.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.26 -6.45 -41.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335684291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.740 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds