Wall clock time and date at job start Mon Mar 30 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.98886 * 2 1 4 4 C 1.54101 * 109.87923 * 121.08069 * 2 1 3 5 5 C 1.54815 * 104.18923 * 117.39878 * 4 2 1 6 6 C 1.55006 * 102.08999 * 339.11791 * 5 4 2 7 7 H 1.08997 * 110.61673 * 278.36486 * 6 5 4 8 8 C 1.52993 * 110.61532 * 155.52456 * 6 5 4 9 9 N 1.46504 * 109.46982 * 180.02562 * 8 6 5 10 10 C 1.34774 * 120.00240 * 180.02562 * 9 8 6 11 11 O 1.21691 * 119.99707 * 0.02562 * 10 9 8 12 12 C 1.46374 * 119.99951 * 179.97438 * 10 9 8 13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 9 14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 9 15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46870 * 270.00007 * 16 14 12 18 18 H 1.48501 * 109.47085 * 29.99786 * 16 14 12 19 19 H 1.48490 * 109.47554 * 149.99845 * 16 14 12 20 20 O 1.43740 * 109.88300 * 238.91504 * 2 1 3 21 21 H 1.08996 * 109.46968 * 298.91556 * 1 2 3 22 22 H 1.08999 * 109.47258 * 58.92389 * 1 2 3 23 23 H 1.09001 * 109.46888 * 178.91953 * 1 2 3 24 24 H 1.09006 * 109.47311 * 181.08263 * 3 2 1 25 25 H 1.09005 * 109.47222 * 301.07731 * 3 2 1 26 26 H 1.08995 * 109.47562 * 61.08211 * 3 2 1 27 27 H 1.08997 * 110.49148 * 358.71972 * 4 2 1 28 28 H 1.09004 * 110.60035 * 236.12672 * 4 2 1 29 29 H 1.08994 * 110.91028 * 220.92172 * 5 4 2 30 30 H 1.08999 * 110.91023 * 97.31391 * 5 4 2 31 31 H 1.08994 * 109.47296 * 60.00143 * 8 6 5 32 32 H 1.09000 * 109.47551 * 299.99882 * 8 6 5 33 33 H 0.97005 * 119.99919 * 359.97438 * 9 8 6 34 34 H 0.97001 * 119.99601 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0540 -0.7481 1.2411 5 6 2.8325 -1.9524 0.6577 6 6 2.2281 -2.0714 -0.7647 7 1 1.2828 -2.6133 -0.7359 8 6 3.2127 -2.7590 -1.7126 9 7 2.6174 -2.8577 -3.0475 10 6 3.3077 -3.4321 -4.0525 11 8 4.4254 -3.8691 -3.8509 12 6 2.7126 -3.5312 -5.3861 13 1 1.7206 -3.1437 -5.5649 14 6 3.4298 -4.1286 -6.4303 15 7 4.6304 -4.5970 -6.2141 16 14 2.6707 -4.2544 -8.1324 17 1 1.9224 -5.5320 -8.2474 18 1 1.7416 -3.1157 -8.3455 19 1 3.7444 -4.2157 -9.1574 20 8 2.0188 -0.6979 -1.1576 21 1 -0.3633 0.4969 0.8995 22 1 -0.3634 0.5304 -0.8802 23 1 -0.3633 -1.0275 -0.0194 24 1 3.1428 1.4281 -0.0194 25 1 1.6786 1.9606 -0.8802 26 1 1.7102 1.9492 0.8995 27 1 1.2238 -1.0930 1.8575 28 1 2.7192 -0.1090 1.8218 29 1 2.6434 -2.8557 1.2375 30 1 3.9004 -1.7390 0.6099 31 1 3.4381 -3.7582 -1.3401 32 1 4.1319 -2.1757 -1.7673 33 1 1.7260 -2.5103 -3.2080 34 1 5.1269 -5.0111 -6.9372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335684291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:25 Heat of formation + Delta-G solvation = -127.903731 kcal Electronic energy + Delta-G solvation = -15952.356439 eV Core-core repulsion = 13269.407816 eV Total energy + Delta-G solvation = -2682.948623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94595 -39.24829 -35.66366 -34.56698 -33.64783 -32.82042 -29.54436 -28.26916 -27.68391 -24.36523 -22.26276 -21.71779 -20.93187 -19.22925 -17.64576 -17.44555 -16.56698 -16.18546 -15.88638 -15.50504 -15.07893 -14.72315 -14.35510 -14.29454 -13.62093 -13.34822 -13.19085 -12.99893 -12.89030 -12.69326 -12.66658 -12.59311 -12.38033 -12.07264 -11.90772 -11.55253 -11.49893 -10.93663 -10.57455 -9.89368 -9.49706 -8.30039 -6.86897 1.39629 1.41897 1.57338 2.24988 2.45715 2.75746 3.13431 3.59219 3.61393 3.81688 3.92991 4.05633 4.19235 4.24210 4.45896 4.53639 4.59356 4.75929 4.79243 4.86431 4.92943 5.00364 5.02237 5.12150 5.22526 5.30311 5.30875 5.42369 5.86363 6.12105 6.21641 6.27084 6.85398 7.52689 8.47345 8.66326 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.045466 B = 0.005658 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.692169 B = 4947.707014 C = 5285.929607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.079 3.921 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.145 4.145 6 C 0.076 3.924 7 H 0.082 0.918 8 C 0.141 3.859 9 N -0.752 5.752 10 C 0.535 3.465 11 O -0.635 6.635 12 C -0.575 4.575 13 H 0.086 0.914 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 1.002 2.998 17 H -0.259 1.259 18 H -0.251 1.251 19 H -0.271 1.271 20 O -0.388 6.388 21 H 0.088 0.912 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.394 0.606 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 8.803 13.565 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 C -0.198 4.198 4 C -0.173 4.173 5 C -0.183 4.183 6 C 0.018 3.982 7 H 0.100 0.900 8 C 0.016 3.984 9 N -0.406 5.406 10 C 0.340 3.660 11 O -0.522 6.522 12 C -0.611 4.611 13 H 0.104 0.896 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.820 3.180 17 H -0.183 1.183 18 H -0.174 1.174 19 H -0.196 1.196 20 O -0.309 6.309 21 H 0.107 0.893 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.227 0.773 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.765 8.516 13.487 18.200 hybrid contribution -0.230 -0.152 -0.740 0.790 sum -8.995 8.364 12.746 17.702 Atomic orbital electron populations 1.22233 0.93813 1.02485 1.03052 1.22444 0.94606 0.93642 0.85289 1.21916 1.01113 0.93746 1.03066 1.23024 1.00957 0.96298 0.97054 1.23113 1.00674 1.00439 0.94070 1.23287 0.97470 0.83707 0.93687 0.89984 1.21016 0.95486 0.98314 0.83540 1.45750 1.20255 1.65445 1.09146 1.18657 0.84658 0.77149 0.85581 1.90537 1.22525 1.54465 1.84715 1.21434 1.04030 1.42062 0.93597 0.89630 1.27023 0.94401 0.91898 1.05413 1.70198 1.11723 1.28714 1.34593 0.84971 0.78467 0.80029 0.74495 1.18311 1.17397 1.19610 1.88995 1.86342 1.20660 1.34873 0.89290 0.92854 0.92520 0.92972 0.92925 0.88727 0.88486 0.89027 0.88128 0.91083 0.92702 0.95248 0.77270 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.61 71.98 0.62 -2.34 16 2 C 0.08 1.77 1.19 -10.42 -0.01 1.76 16 3 C -0.14 -2.82 8.68 71.98 0.62 -2.20 16 4 C -0.14 -2.41 6.27 31.59 0.20 -2.22 16 5 C -0.14 -3.29 6.59 31.90 0.21 -3.08 16 6 C 0.08 2.32 3.32 31.28 0.10 2.43 16 7 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 8 C 0.14 5.92 5.42 86.38 0.47 6.39 16 9 N -0.75 -36.96 5.53 -467.42 -2.59 -39.54 16 10 C 0.54 33.01 7.75 86.36 0.67 33.68 16 11 O -0.63 -44.64 15.02 -4.32 -0.06 -44.70 16 12 C -0.57 -34.23 9.54 24.83 0.24 -34.00 16 13 H 0.09 4.60 7.85 -2.92 -0.02 4.58 16 14 C 0.03 1.59 5.50 85.31 0.47 2.06 16 15 N -0.82 -52.00 11.83 21.84 0.26 -51.74 16 16 Si 1.00 42.24 29.56 68.60 2.03 44.26 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 O -0.39 -12.57 10.54 -148.98 -1.57 -14.14 16 21 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 24 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.31 7.70 -2.39 -0.02 1.29 16 28 H 0.09 1.37 7.70 -2.38 -0.02 1.35 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16 31 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.39 17.36 8.45 -92.70 -0.78 16.58 16 34 H 0.28 15.65 8.29 -92.71 -0.77 14.88 16 Total: -1.00 -79.39 286.09 1.95 -77.45 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.30 Total: 25.93 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 3.59 Total: 2.48 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -2.33 Total: -91.28 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -1.63 Total: -58.85 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -79.39 1.95 -77.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335684291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.458 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds