Wall clock time and date at job start Mon Mar 30 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 113.01490 * 2 1 4 4 O 1.20821 * 120.00378 * 131.63137 * 3 2 1 5 5 O 1.34232 * 119.99588 * 311.63823 * 3 2 1 6 6 C 1.53937 * 113.73041 * 131.63456 * 2 1 3 7 7 N 1.47955 * 86.18157 * 138.07673 * 6 2 1 8 8 C 1.46896 * 111.00525 * 222.41550 * 7 6 2 9 9 C 1.53000 * 109.47388 * 170.00012 * 8 7 6 10 10 C 1.53007 * 109.47109 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47054 * 179.97438 * 10 9 8 12 12 H 1.08007 * 120.00113 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00066 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99921 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00245 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46869 * 59.99744 * 15 13 11 17 17 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46942 * 299.99794 * 15 13 11 19 19 C 1.47961 * 90.76430 * 335.31007 * 7 6 2 20 20 H 1.09001 * 109.46966 * 288.36593 * 1 2 3 21 21 H 1.09004 * 109.46853 * 48.36486 * 1 2 3 22 22 H 1.08999 * 109.47770 * 168.36661 * 1 2 3 23 23 H 0.96696 * 117.00112 * 180.02562 * 5 3 2 24 24 H 1.09005 * 113.75745 * 252.39395 * 6 2 1 25 25 H 1.08996 * 113.76539 * 23.76082 * 6 2 1 26 26 H 1.08998 * 109.47190 * 290.00447 * 8 7 6 27 27 H 1.09002 * 109.47036 * 50.00132 * 8 7 6 28 28 H 1.09000 * 109.46776 * 299.99827 * 9 8 7 29 29 H 1.08993 * 109.47154 * 60.00150 * 9 8 7 30 30 H 1.09001 * 109.46808 * 300.00014 * 10 9 8 31 31 H 1.08997 * 109.46788 * 59.99605 * 10 9 8 32 32 H 0.96997 * 119.99787 * 180.02562 * 14 13 11 33 33 H 1.09002 * 113.75838 * 270.37219 * 19 7 6 34 34 H 1.09002 * 113.76303 * 139.00391 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1192 1.3870 0.0000 4 8 2.9952 1.6714 0.7820 5 8 1.6706 2.3067 -0.8688 6 6 2.1495 -0.9362 1.0532 7 7 3.1154 -1.3198 0.0001 8 6 3.3458 -2.7706 0.0002 9 6 4.1450 -3.1601 -1.2450 10 6 4.3845 -4.6713 -1.2452 11 6 5.1711 -5.0551 -2.4719 12 1 5.4700 -4.2970 -3.1808 13 6 5.5083 -6.3740 -2.6900 14 7 5.1430 -7.2973 -1.8276 15 14 6.4841 -6.8497 -4.2103 16 1 7.7897 -6.1422 -4.2018 17 1 6.7163 -8.3163 -4.2105 18 1 5.7223 -6.4684 -5.4267 19 6 2.1495 -0.9364 -1.0531 20 1 -0.3633 0.3238 0.9753 21 1 -0.3633 0.6828 -0.7681 22 1 -0.3634 -1.0065 -0.2072 23 1 2.0793 3.1822 -0.8313 24 1 2.6025 -0.4119 1.8947 25 1 1.4905 -1.7479 1.3613 26 1 3.9053 -3.0496 0.8930 27 1 2.3878 -3.2906 -0.0056 28 1 3.5854 -2.8812 -2.1378 29 1 5.1029 -2.6402 -1.2393 30 1 4.9438 -4.9507 -0.3524 31 1 3.4263 -5.1910 -1.2511 32 1 5.3806 -8.2252 -1.9808 33 1 1.4904 -1.7480 -1.3611 34 1 2.6025 -0.4121 -1.8946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399176966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:25 Heat of formation + Delta-G solvation = -73.831649 kcal Electronic energy + Delta-G solvation = -15653.586679 eV Core-core repulsion = 12972.982797 eV Total energy + Delta-G solvation = -2680.603882 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19199 -39.02567 -36.14356 -34.41055 -32.55681 -30.68900 -27.28915 -26.32110 -24.96050 -23.74197 -21.51340 -19.97342 -19.51594 -17.91147 -16.63830 -16.34143 -15.93721 -15.07419 -14.85765 -14.48124 -14.29383 -13.91093 -12.95752 -12.94241 -12.53928 -12.46417 -12.26083 -11.71919 -11.54408 -11.28894 -11.07051 -10.80148 -10.75875 -10.53223 -10.46597 -10.38325 -9.68332 -9.31242 -9.04990 -8.61898 -8.32897 -5.98346 -4.00496 2.11771 2.83360 3.34850 3.38882 3.41804 3.95163 4.08719 4.47405 4.56919 4.93718 5.17506 5.27633 5.37377 5.40416 5.45177 5.53421 5.61623 5.70025 5.77995 5.87856 5.98086 6.26322 6.38116 6.47393 6.68452 6.81365 7.15290 7.26514 7.68903 7.82615 7.83642 8.01718 8.45106 9.06309 9.63464 11.13088 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.050055 B = 0.004698 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.252111 B = 5959.185951 C = 6119.563229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C 0.509 3.491 4 O -0.500 6.500 5 O -0.516 6.516 6 C 0.023 3.977 7 N -0.477 5.477 8 C 0.021 3.979 9 C -0.104 4.104 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.027 3.973 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.409 0.591 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 15.550 3.583 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C 0.350 3.650 4 O -0.386 6.386 5 O -0.328 6.328 6 C -0.105 4.105 7 N -0.199 5.199 8 C -0.107 4.107 9 C -0.142 4.142 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.102 4.102 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.267 0.733 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.969 15.293 3.831 18.653 hybrid contribution 0.104 -0.281 -0.796 0.850 sum -9.865 15.012 3.035 18.218 Atomic orbital electron populations 1.21757 0.91155 1.03541 1.02953 1.22080 0.97085 0.89122 1.01363 1.22476 0.79461 0.86264 0.76834 1.90714 1.29056 1.80064 1.38787 1.84506 1.64480 1.25653 1.58130 1.24024 0.93933 0.96447 0.96137 1.68691 1.31365 1.17702 1.02142 1.22829 0.99855 0.86397 1.01593 1.21594 0.98584 1.00049 0.94001 1.19070 0.96737 0.88563 0.97155 1.21213 1.34555 0.92762 1.07252 0.92761 1.25021 0.96134 0.96680 0.96607 1.69956 1.46685 1.01120 1.35873 0.86655 0.80642 0.77254 0.83439 1.20222 1.21290 1.20267 1.24005 0.94028 0.96599 0.95552 0.91776 0.90926 0.90910 0.73284 0.88266 0.89939 0.90693 0.94358 0.93574 0.92604 0.96556 0.96801 0.92981 0.89385 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.16 37.16 0.34 -0.82 16 2 C -0.09 -1.09 1.37 -154.73 -0.21 -1.30 16 3 C 0.51 6.32 7.32 36.01 0.26 6.58 16 4 O -0.50 -7.81 16.65 -18.75 -0.31 -8.13 16 5 O -0.52 -4.80 13.04 -39.26 -0.51 -5.31 16 6 C 0.02 0.30 6.90 -2.77 -0.02 0.28 16 7 N -0.48 -7.50 6.18 -238.02 -1.47 -8.97 16 8 C 0.02 0.37 4.82 -3.83 -0.02 0.35 16 9 C -0.10 -2.21 5.22 -26.73 -0.14 -2.35 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.97 9.11 -34.45 -0.31 -15.28 16 12 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.03 0.36 6.22 -2.77 -0.02 0.34 16 20 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 22 H 0.07 0.57 7.94 -51.93 -0.41 0.15 16 23 H 0.41 2.08 9.10 45.56 0.41 2.49 16 24 H 0.10 1.33 7.41 -51.93 -0.38 0.95 16 25 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 28 H 0.05 0.95 7.54 -51.93 -0.39 0.56 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.09 1.09 7.60 -51.93 -0.39 0.69 16 34 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 LS Contribution 288.29 15.07 4.34 4.34 Total: -1.00 -33.34 288.29 -7.04 -40.38 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.45 Total: -2.52 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.35 Total: -10.21 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.73 Total: -35.45 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.82 Total: -13.44 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.34 -7.04 -40.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399176966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.450 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds