Wall clock time and date at job start Mon Mar 30 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 113.01490 * 2 1 4 4 O 1.20821 * 120.00378 * 131.63137 * 3 2 1 5 5 O 1.34232 * 119.99588 * 311.63823 * 3 2 1 6 6 C 1.53937 * 113.73041 * 131.63456 * 2 1 3 7 7 N 1.47955 * 86.18157 * 138.07673 * 6 2 1 8 8 C 1.46896 * 111.00525 * 222.41550 * 7 6 2 9 9 C 1.53000 * 109.47388 * 170.00012 * 8 7 6 10 10 C 1.53007 * 109.47109 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47054 * 179.97438 * 10 9 8 12 12 H 1.08007 * 120.00113 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00066 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99921 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00245 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46869 * 59.99744 * 15 13 11 17 17 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46942 * 299.99794 * 15 13 11 19 19 C 1.47961 * 90.76430 * 335.31007 * 7 6 2 20 20 H 1.09001 * 109.46966 * 288.36593 * 1 2 3 21 21 H 1.09004 * 109.46853 * 48.36486 * 1 2 3 22 22 H 1.08999 * 109.47770 * 168.36661 * 1 2 3 23 23 H 0.96696 * 117.00112 * 180.02562 * 5 3 2 24 24 H 1.09005 * 113.75745 * 252.39395 * 6 2 1 25 25 H 1.08996 * 113.76539 * 23.76082 * 6 2 1 26 26 H 1.08998 * 109.47190 * 290.00447 * 8 7 6 27 27 H 1.09002 * 109.47036 * 50.00132 * 8 7 6 28 28 H 1.09000 * 109.46776 * 299.99827 * 9 8 7 29 29 H 1.08993 * 109.47154 * 60.00150 * 9 8 7 30 30 H 1.09001 * 109.46808 * 300.00014 * 10 9 8 31 31 H 1.08997 * 109.46788 * 59.99605 * 10 9 8 32 32 H 0.96997 * 119.99787 * 180.02562 * 14 13 11 33 33 H 1.09002 * 113.75838 * 270.37219 * 19 7 6 34 34 H 1.09002 * 113.76303 * 139.00391 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1192 1.3870 0.0000 4 8 2.9952 1.6714 0.7820 5 8 1.6706 2.3067 -0.8688 6 6 2.1495 -0.9362 1.0532 7 7 3.1154 -1.3198 0.0001 8 6 3.3458 -2.7706 0.0002 9 6 4.1450 -3.1601 -1.2450 10 6 4.3845 -4.6713 -1.2452 11 6 5.1711 -5.0551 -2.4719 12 1 5.4700 -4.2970 -3.1808 13 6 5.5083 -6.3740 -2.6900 14 7 5.1430 -7.2973 -1.8276 15 14 6.4841 -6.8497 -4.2103 16 1 7.7897 -6.1422 -4.2018 17 1 6.7163 -8.3163 -4.2105 18 1 5.7223 -6.4684 -5.4267 19 6 2.1495 -0.9364 -1.0531 20 1 -0.3633 0.3238 0.9753 21 1 -0.3633 0.6828 -0.7681 22 1 -0.3634 -1.0065 -0.2072 23 1 2.0793 3.1822 -0.8313 24 1 2.6025 -0.4119 1.8947 25 1 1.4905 -1.7479 1.3613 26 1 3.9053 -3.0496 0.8930 27 1 2.3878 -3.2906 -0.0056 28 1 3.5854 -2.8812 -2.1378 29 1 5.1029 -2.6402 -1.2393 30 1 4.9438 -4.9507 -0.3524 31 1 3.4263 -5.1910 -1.2511 32 1 5.3806 -8.2252 -1.9808 33 1 1.4904 -1.7480 -1.3611 34 1 2.6025 -0.4121 -1.8946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399176966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:25 Heat of formation + Delta-G solvation = -98.617721 kcal Electronic energy + Delta-G solvation = -15654.661483 eV Core-core repulsion = 12972.982797 eV Total energy + Delta-G solvation = -2681.678687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19377 -40.04895 -37.06704 -36.20631 -34.31434 -32.14826 -28.85252 -27.36715 -26.27026 -25.09058 -23.06040 -21.63325 -20.43757 -18.83619 -18.48468 -17.59534 -17.04368 -16.54408 -16.32091 -15.93003 -15.47487 -15.12726 -14.35266 -14.13449 -13.86180 -13.70358 -13.30833 -13.18205 -12.96758 -12.64880 -12.58300 -12.51259 -12.19351 -12.04901 -11.67220 -11.51045 -11.43592 -11.32952 -11.03091 -10.55129 -9.77609 -8.20395 -6.31515 1.16037 1.39799 1.42948 1.50952 2.01421 2.40859 2.89619 3.12642 3.13223 3.61061 4.05014 4.09047 4.22717 4.32799 4.42424 4.56603 4.63966 4.69371 4.75481 4.87743 4.90859 4.98002 5.08015 5.19477 5.27896 5.40345 5.51001 5.60726 5.73130 5.84699 6.00277 6.26154 6.84609 7.01160 7.37684 8.91253 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.050055 B = 0.004698 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.252111 B = 5959.185951 C = 6119.563229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C 0.510 3.490 4 O -0.539 6.539 5 O -0.506 6.506 6 C 0.024 3.976 7 N -0.503 5.503 8 C 0.034 3.966 9 C -0.089 4.089 10 C 0.027 3.973 11 C -0.546 4.546 12 H 0.057 0.943 13 C 0.001 3.999 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.024 3.976 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.428 0.572 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.042 0.958 30 H -0.010 1.010 31 H -0.003 1.003 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 16.349 2.588 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C 0.353 3.647 4 O -0.429 6.429 5 O -0.319 6.319 6 C -0.104 4.104 7 N -0.225 5.225 8 C -0.094 4.094 9 C -0.127 4.127 10 C -0.011 4.011 11 C -0.584 4.584 12 H 0.075 0.925 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.104 4.104 20 H 0.094 0.906 21 H 0.099 0.901 22 H 0.102 0.898 23 H 0.289 0.711 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.008 0.992 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.968 16.132 2.821 19.710 hybrid contribution 0.394 -0.471 -0.482 0.781 sum -10.573 15.660 2.339 19.040 Atomic orbital electron populations 1.21768 0.88408 1.04582 1.04024 1.21998 0.99013 0.88152 0.99493 1.22671 0.78662 0.86948 0.76390 1.90708 1.30780 1.80893 1.40488 1.84461 1.64102 1.26565 1.56789 1.24080 0.93528 0.97263 0.95530 1.68644 1.33721 1.15742 1.04431 1.22563 0.99568 0.88269 0.99038 1.21330 0.98741 0.96285 0.96352 1.18965 0.95053 0.91817 0.95276 1.21653 1.35174 0.93330 1.08202 0.92518 1.25961 0.97106 0.96598 0.99991 1.70083 1.47753 1.01566 1.37864 0.85515 0.79140 0.77087 0.79396 1.19458 1.20629 1.19010 1.24080 0.93730 0.97330 0.95289 0.90567 0.90090 0.89819 0.71060 0.89271 0.87870 0.91674 0.93207 0.92901 0.93915 0.99183 0.98501 0.92713 0.88187 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.16 71.98 0.66 -1.14 16 2 C -0.08 -1.77 1.37 -52.28 -0.07 -1.85 16 3 C 0.51 11.88 7.32 71.24 0.52 12.40 16 4 O -0.54 -16.52 16.65 21.98 0.37 -16.16 16 5 O -0.51 -8.26 13.04 -51.44 -0.67 -8.93 16 6 C 0.02 0.59 6.90 86.41 0.60 1.18 16 7 N -0.50 -15.41 6.18 -906.96 -5.60 -21.02 16 8 C 0.03 1.18 4.82 86.30 0.42 1.59 16 9 C -0.09 -3.81 5.22 30.60 0.16 -3.65 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 13 C 0.00 0.07 5.46 84.65 0.46 0.54 16 14 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 15 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C 0.02 0.60 6.22 86.41 0.54 1.14 16 20 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.08 1.02 7.85 -2.38 -0.02 1.00 16 22 H 0.08 1.01 7.94 -2.39 -0.02 0.99 16 23 H 0.43 3.41 9.10 -74.06 -0.67 2.73 16 24 H 0.09 2.34 7.41 -2.38 -0.02 2.32 16 25 H 0.10 2.05 7.75 -2.39 -0.02 2.03 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 27 H 0.05 1.60 7.69 -2.39 -0.02 1.58 16 28 H 0.05 2.16 7.54 -2.39 -0.02 2.14 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.10 2.24 7.60 -2.39 -0.02 2.22 16 34 H 0.09 2.21 8.09 -2.39 -0.02 2.19 16 Total: -1.00 -71.75 288.29 0.47 -71.27 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.41 Total: 4.69 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 3.66 Total: -19.72 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -5.32 Total: -77.92 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.30 Total: -25.08 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.75 0.47 -71.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399176966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.343 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds